chromosomal replication initiator protein DnaA		dnaA	chromosomal replication initiator protein DnaA		CDS	Chromosomal replication initiator protein DnaA			base_lit-s	lit-s	lit-s	
DNA polymerase III, beta subunit	2.7.7.7	dnaN	DNA polymerase III, beta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III beta subunit	2.7.7.7		base_tigr	base_ec	base_ec	
DNA replication and repair RecF family protein		recF	DNA replication and repair protein RecF		CDS	DNA recombination and repair protein RecF			base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives		CDS	"Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives"			base_one HP	base_one HP	lit-s	
DNA gyrase, B subunit	5.99.1.3	gyrB	DNA gyrase subunit B (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase subunit B	5.99.1.3		base_tigr	base_ec	base_ec	
DNA gyrase, A subunit	5.99.1.3	gyrA	DNA gyrase subunit A (EC 5.99.1.3)	5.99.1.3	CDS	DNA gyrase subunit A	5.99.1.3		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822768: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Transmembrane domain of unknown function (DUF3566).		CDS	FIG187021: hypothetical protein			base_one HP	base_one HP	0	
hypothetical protein									base_one HP	base_one HP	base_both miss	
putative predicted protein			hypothetical protein		CDS	FIG00822946: hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2562).		CDS	FIG024317: hypothetical protein			base_one HP	base_one HP	lit-s	
putative peptidyl-prolyl cis-trans isomerase A			Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	Peptidyl-prolyl cis-trans isomerase	5.2.1.8		tf_idf	tf_idf	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822644: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			4-alpha-glucanotransferase		CDS	FIG020554: membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterised protein family (UPF0233).		CDS	FIG018426: putative septation inhibitor protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG215594: Membrane spanning protein			base_one HP	base_one HP	0	
serine/threonine-protein kinase pknB	2.7.11.1	pknB	Uncharacterized protein conserved in bacteria	2.7.11.1	CDS	PknB			base_ec	gs-sh	0	
glutamine amidotransferase of anthranilate synthase/aminodeoxychorismate synthase family protein			anthranilate synthase, component II	2.6.1.85,4.1.3.27	CDS	"Anthranilate synthase, amidotransferase component @ Para-aminobenzoate synthase, amidotransferase component # TrpAb@PabAb"	4.1.3.27, 2.6.1.85		base_tigr	0	base_ec-d	
putative serine/threonine-protein kinase pknA			Serine/threonine protein kinase	2.7.11.1	CDS	Serine/threonine-protein kinase PknA	2.7.11.1		gs-sh	lit-s	base_ec	
penicillin-binding protein A		pbpA	Cell division protein FtsI/penicillin-binding protein 2	2.4.1.129	CDS	Cell division protein FtsI [Peptidoglycan synthetase]	2.4.1.129		gs-sh	gs-sh	base_ec	
cell cycle family protein			cell elongation-specific peptidoglycan biosynthesis regulator RodA		CDS	Cell division protein FtsW			0	0	gs-sh	
phosphatase 2C family protein			Serine/threonine protein phosphatase	3.1.3.16	CDS	Serine/threonine phosphatase PPP	3.1.3.16		tf_idf	tf_idf	base_ec	
FHA domain protein			FOG: FHA domain		CDS	FIG00818182: hypothetical protein			lit-s	0	0	
FHA domain protein			FOG: FHA domain		CDS	FIG025441: hypothetical protein			lit-s	0	0	
conserved hypothetical protein						FIG00830002: hypothetical protein			base_one HP	base_one HP	base_one miss	
nitronate monooxygenase family protein			Dioxygenases related to 2-nitropropane dioxygenase	1.13.12.16	CDS	hypothetical protein			0	base_one HP	base_one HP	
putative transcriptional regulatory protein (Whib-like), WhiB5			Transcription factor WhiB.		CDS	WhiB family transcriptional regulator			0	0	0	
helix-turn-helix family protein			Predicted transcriptional regulators		CDS	Transcriptional regulatory protein			0	0	0	
nlpC/P60 family protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	"NlpC/P60 family, cell wall-associated hydrolase, invasion-associated protein"			gs-sh	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4226).		CDS	FIG00821242: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF4226).		CDS	FIG00821131: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2580).		CDS	FIG00822329: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2694).		CDS	FIG00820005: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Vegetative cell wall protein gp1 precursor			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2710).		CDS	FIG00820917: hypothetical protein			base_one HP	base_one HP	lit-s	
aminotransferase class-V family protein			7-keto-8-aminopelargonate synthetase and related enzymes	2.3.1.47	CDS	"aminotransferase, class II"			0	0	0	
phosphopantetheine attachment site family protein			Acyl carrier protein		CDS	Acyl carrier protein			0	0	base_lit-s	
snoaL-like domain protein			Ketosteroid isomerase-related protein		CDS	FIG00821634: hypothetical protein			0	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
conserved hypothetical protein			TIGR03084 family protein		CDS	FIG00822256: hypothetical protein			base_one HP	base_one HP	lit-s	
major Facilitator Superfamily protein			Major Facilitator Superfamily.		CDS	Possible membrane protein			lit-s	0	0	
conserved hypothetical protein			Putative transcriptional regulator		CDS	FIG00996838: hypothetical protein			base_one HP	base_one HP	0	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
putative lipoLpqN family protein			Probable lipoprotein LpqN.		CDS	Proline-rich 28 kDa antigen			0	0	0	
leucine--tRNA ligase	6.1.1.4	leuS	leucyl-tRNA synthetase (EC 6.1.1.4)	6.1.1.4	CDS	Leucyl-tRNA synthetase	6.1.1.4		base_tigr	base_ec	base_ec	
marR family protein			transcriptional regulator, MarR family		CDS	"Transcriptional regulator, MarR family"			gs-sh	gs-sh	lit-s	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family"			gs-sh	gs-sh	lit-s	
putative F420-dependent oxidoreductase, MSMEG_2906 family protein			probable F420-dependent oxidoreductase, MSMEG_2906 family		CDS	Possible oxidoreductase			base_tigr	0	0	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Hydrolase			0	0	0	
inositol 1-phosphate synthase	5.5.1.-		inositol 1-phosphate synthase, Actinobacterial type	5.5.1.4	CDS	Inositol-1-phosphate synthase	5.5.1.4		base_tigr	map	base_ec	
transcriptional regulator PadR-like family protein			transcriptional regulator, PadR family		CDS	"Transcriptional regulator, PadR family"			pfam-sh	pfam-sh	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF1707).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
penicillin binding transpeptidase domain protein			Membrane carboxypeptidase (penicillin-binding protein)		CDS	Multimodular transpeptidase-transglycosylase	2.4.1.129, 3.4.-.-		0	0	0	
conserved hypothetical protein			Predicted integral membrane protein		CDS	Multimodular transpeptidase-transglycosylase	2.4.1.129, 3.4.-.-		base_one HP	base_one HP	0	
DJ-1/PfpI family protein			Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain		CDS	ThiJ/PfpI family protein			map	orth	gs-sh	
ribosomal protein S6		rpsF	SSU ribosomal protein S6P		CDS	SSU ribosomal protein S6p			base_tigr	map	lit-s	
single-stranded DNA-binding protein		ssb	single-strand binding protein		CDS	Single-stranded DNA-binding protein			gs-sh	lit-s	orth	
ribosomal protein S18		rpsR	SSU ribosomal protein S18P		CDS	"SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-dependent"			base_tigr	0	0	
ribosomal protein L9		rplI	LSU ribosomal protein L9P		CDS	LSU ribosomal protein L9p			base_tigr	map	lit-s	
			hypothetical protein		CDS	FIG00822036: hypothetical protein			base_one HP	base_one miss	base_one HP	
replicative DNA helicase	3.6.4.12	dnaB	replicative DNA helicase	3.6.4.12	CDS	Replicative DNA helicase @ intein-containing	3.6.1.-		base_lit-s	tf_idf	tf_idf	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821672: hypothetical protein			lit-s	base_one HP	base_one HP	
macro domain protein			Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1		CDS	"ADP-ribose 1""-phosphate phophatase related protein"			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822718: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00820573: hypothetical protein			base_one HP	base_one HP	base_one miss	
endoglucanase A	3.2.1.4	cenA	Cellobiohydrolase A (1,4-beta-cellobiosidase A)	3.2.1.4	CDS	Endoglucanase A precursor	3.2.1.4		base_ec	base_ec	base_ec	
FAD binding domain protein			FAD/FMN-containing dehydrogenases		CDS	Oxidoreductase			0	0	0	
putative predicted protein			hypothetical protein		CDS	FIG00823318: hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	INTEGRAL MEMBRANE PROTEIN (Rhomboid family)			base_one HP	base_one HP	0	
putative antitoxin VapB1			hypothetical protein		CDS	FIG00821519: hypothetical protein			base_one HP	0	base_one HP	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821043: hypothetical protein			pfam-sh	0	0	
isocitrate dehydrogenase, NADP-dependent	1.1.1.42		isocitrate dehydrogenase, NADP-dependent, monomeric type	1.1.1.42	CDS	Isocitrate dehydrogenase [NADP]; Monomeric isocitrate dehydrogenase [NADP]	1.1.1.42, 1.1.1.42		base_tigr	base_ec-d	base_ec-d	
transcriptional regulator, TetR family			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			base_lit-s	lit-s	lit-s	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Oxidoreductase/Short-chain dehydrogenase			0	0	0	
L-serine ammonia-lyase	4.3.1.17		L-serine ammonia-lyase (EC 4.3.1.17)	4.3.1.17	CDS	L-serine dehydratase	4.3.1.17		base_tigr	base_ec	base_ec	
serine hydroxymethyltransferase family protein			serine hydroxymethyltransferase (EC 2.1.2.1)	2.1.2.1	CDS	Serine hydroxymethyltransferase	2.1.2.1		lit-s	lit-s	base_ec	
reverse transcriptase family protein			Retron-type reverse transcriptase		CDS	Retron-type RNA-directed DNA polymerase	2.7.7.49		0	0	0	
ftsX-like permease family protein			ABC-type transport system, involved in lipoprotein release, permease component		CDS	Glutamine-transport transmembrane protein ABC transporter			gs-sh	0	0	
ABC transporter family protein			ABC-type antimicrobial peptide transport system, ATPase component		CDS	Glutamine-transport ATP-binding protein ABC transporter			0	tf_idf	0	
amidohydrolase family protein			Imidazolonepropionase and related amidohydrolases		CDS	hypothetical protein			0	base_one HP	base_one HP	
beta C-S lyase	3.-.-.-	aecD	Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	4.4.1.8	CDS	"Cystathionine beta-lyase, type II"	4.4.1.8		gs-sh	map	base_ec	
putative membrane protein			hypothetical protein		CDS	PROBABLE MEMBRANE PROTEIN			base_one HP	lit-s	base_one HP	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Oxidoreductase			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Nucleotidyl transferase of unknown function (DUF1814).		CDS	FIG00822098: hypothetical protein			base_one HP	base_one HP	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820894: hypothetical protein			lit-s	base_one HP	base_one HP	
pyridoxamine 5'-phosphate oxidase family protein			Predicted flavin-nucleotide-binding protein		CDS	FIG033054: hypothetical protein			0	0	0	
conserved hypothetical protein			transcriptional regulator, ArsR family		CDS	"regulatory protein, ArsR"			base_one HP	base_one HP	pfam-sh	
NADH ubiquinone oxidoreductase, 20 Kd subunit			Ni,Fe-hydrogenase III small subunit		CDS	Formate hydrogenlyase subunit 7			0	0	orth	
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit		CDS	Hydrogenase-4 component B / Formate hydrogenlyase subunit 3	1.-.-.-		0	0	0	
NADH dehydrogenase family protein			Formate hydrogenlyase subunit 4		CDS	Formate hydrogenlyase subunit 4			0	0	base_lit-s	
putative membrane protein			Hydrogenase 4 membrane component (E)	1.-	CDS	Hydrogenase-4 component E	1.-.-.-		0	0	orth	
NADH-Ubiquinone/plastoquinone (complex I), various chains family protein			Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit	1.-	CDS	Hydrogenase-4 component F	1.-.-.-		0	0	0	
respiratory-chain NADH dehydrogenase, 30 Kd subunit			NADH dehydrogenase subunit C	1.6.5.3	CDS	Formate hydrogenlyase subunit 5			0	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Oligoketide cyclase/lipid transport protein		CDS	FIG00821781: hypothetical protein			0	0	0	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase/methylase			0	0	orth	
conserved hypothetical protein			Predicted membrane protein		CDS	Possible membrane protein			base_one HP	base_one HP	lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
MTA/SAH nucleosidase	3.2.2.16	mtnN	Nucleoside phosphorylase	3.2.2.9	CDS	5'-methylthioadenosine nucleosidase / S-adenosylhomocysteine nucleosidase	3.2.2.16, 3.2.2.9		base_tigr	base_ec-d	base_ec-d	
			Predicted integral membrane protein		CDS				base_one miss	base_both miss	base_one miss	
copper-translocating P-type ATPase	3.6.3.4		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		0	base_ec-d	0	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	Partial REP13E12 repeat protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	Partial REP13E12 repeat protein			base_one HP	base_one HP	0	
conserved hypothetical protein						FIG00821345: hypothetical protein			base_one HP	base_one HP	base_one miss	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
taurine catabolism dioxygenase TauD, TfdA family protein			Probable taurine catabolism dioxygenase		CDS	Oxidoreductase			0	0	0	
conserved hypothetical protein			FcoT-like thioesterase domain.		CDS	FIG00822555: hypothetical protein			base_one HP	base_one HP	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
phosphopantetheine attachment site family protein			Phosphopantetheine attachment site.		CDS	FIG024827: hypothetical protein			lit-s	0	0	
thioester reductase domain protein			amino acid adenylation domain/thioester reductase domain		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		0	0	0	
cytochrome c oxidase caa3 assembly factor family protein			Predicted membrane protein		CDS	"Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein"			0	0	0	
copper-translocating P-type ATPase	3.6.3.4		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		0	base_ec-d	0	
cyclic nucleotide-binding domain protein			Cyclic nucleotide-binding domain.		CDS	FIG00823331: hypothetical protein			lit-s	0	0	
ribosomal protein L28		rpmB	LSU ribosomal protein L28P		CDS	LSU ribosomal protein L28p			base_tigr	map	lit-s	
cobW/HypB/UreG, nucleotide-binding domain protein			Putative GTPases (G3E family)		CDS	"Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family"			gs-sh	0	0	
HAD ATPase, P-type, IC family protein	3.6.3.-		ATPase, P-type (transporting), HAD superfamily, subfamily IC	3.6.3.-	CDS	Probable cation-transporting ATPase I	3.6.3.-		base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821282: hypothetical protein			lit-s	base_one HP	base_one HP	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
rhomboid family protein			Uncharacterized membrane protein (homolog of Drosophila rhomboid)		CDS	FIG056164: rhomboid family serine protease			0	0	0	
acyltransferase family protein			Predicted acyltransferases		CDS	Transmembrane acyltransferase (EC:2.3.1.-)			0	0	0	
polysaccharide biosynthesis family protein			Nucleoside-diphosphate-sugar epimerases	4.2.1.47	CDS	"GDP-mannose 4,6 dehydratase"	4.2.1.47		0	0	base_ec	
phosphoheptose isomerase	5.3.1.28	gmhA	phosphoheptose isomerase	5.3.1.28,5.3.1.-	CDS	Phosphoheptose isomerase	5.3.1.-		base_lit-s	lit-s	lit-s	
hypothetical protein						FIG00820450: hypothetical protein			base_one HP	base_one HP	base_one miss	
			histidinol-phosphate phosphatase family domain/HAD-superfamily hydrolase, subfamily IIIA	3.1.3.82, 3.1.3.83	CDS				base_one miss	base_both miss	base_one miss	
D-glycero-D-manno-heptose 1-phosphate kinase			Predicted kinase related to galactokinase and mevalonate kinase	2.7.1.168	CDS	"D,D-heptose 7-phosphate kinase"			0	0	0	
hypothetical protein			hypothetical protein		CDS	FIG00821503: hypothetical protein			base_lit-s	base_one HP	base_one HP	
L,D-transpeptidase catalytic domain protein			Uncharacterized protein conserved in bacteria		CDS	Possible membrane protein			0	0	0	
oxalyl-CoA decarboxylase	4.1.1.8	oxc	oxalyl-CoA decarboxylase	4.1.1.8	CDS	Oxalyl-CoA decarboxylase	4.1.1.8		base_lit-s	base_ec	base_ec	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	Hydrogen peroxide-inducible genes activator			gs-sh	0	0	
putative peroxisomal-coenzyme A synthetase			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		0	0	0	
small GTP-binding domain protein			translation elongation factor 2 (EF-2/EF-G)		CDS	Translation elongation factor G-related protein			0	0	0	
pyridoxamine 5'-phosphate oxidase family protein			PPOX class probable F420-dependent enzyme, Rv0121 family		CDS	PPOX class F420-dependent enzyme			0	0	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823664: hypothetical protein			lit-s	base_one HP	base_one HP	
ribbon-helix-helix , copG family protein			Ribbon-helix-helix protein, copG family.		CDS	"DNA-binding protein, CopG family"			lit-s	gs-sh	gs-sh	
hypothetical protein						FIG00824260: hypothetical protein			base_one HP	base_one HP	base_one miss	
PE family protein			PE family.		CDS	PE-PGRS family protein			lit-s	0	0	
trypsin family protein			Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	Serine protease PepA			0	0	0	
trehalose synthase	5.4.99.16	treS	trehalose synthase	3.2.1.1, 5.4.99.16	CDS	Trehalose synthase	5.4.99.16		base_lit-s	base_ec	base_ec-d	
phosphotransferase enzyme family protein			Uncharacterized protein, probably involved in trehalose biosynthesis		CDS	"Uncharacterized protein, probably involved in trehalose biosynthesis [Carbohydrate transport and metabolism]"			0	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Possible membrane protein			base_one HP	base_one HP	lit-s	
antigen 85-C	2.3.1.-	fbpC	Predicted esterase		CDS	Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C)	2.3.1.-		gs-sh	0	0	
putative enoyl-CoA hydratase 1			Acyl dehydratase		CDS	Probable enoyl-CoA hydratase 1	4.2.1.17		0	lit-s	0	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases	1.3.99.3	CDS	PROBABLE ACYL-CoA DEHYDROGENASE FADE1	1.3.99.-		0	tf_idf	0	
F420-dependent oxidoreductase, G6PDH family protein	1.-.-.-		F420-dependent oxidoreductase, G6PDH family		CDS	F420-dependent glucose-6-phosphate dehydrogenase Fgd3			base_tigr	0	0	
acetyltransferase family protein			Predicted acetyltransferase		CDS	Histone acetyltransferase HPA2 and related acetyltransferases			lit-s	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	epoxide hydrolase			0	0	0	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 138			lit-s	tf_idf	tf_idf	
peptide-methionine (S)-S-oxide reductase	1.8.4.11	msrA	methionine-S-sulfoxide reductase	1.8.4.11	CDS	Peptide methionine sulfoxide reductase MsrA	1.8.4.11		base_tigr	base_ec	base_ec	
snoaL-like domain protein			SnoaL-like domain.		CDS	FIG00821695: hypothetical protein			lit-s	0	0	
NAD dependent epimerase/dehydratase family protein			Nucleoside-diphosphate-sugar epimerases	1.1.1.219	CDS	Dihydroflavonol-4-reductase	1.1.1.219		0	0	base_ec	
snoaL-like domain protein			Ketosteroid isomerase-related protein		CDS	FIG00820093: hypothetical protein			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00822464: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase		CDS	FIG00822261: hypothetical protein			base_one HP	base_one HP	0	
voltage gated chloride channel family protein			Chloride channel protein EriC		CDS	Chloride channel protein			0	tf_idf	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			methyltransferase, putative, TIGR00027 family		CDS	FIG00823034: hypothetical protein			0	0	0	
putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			methyltransferase, putative, TIGR00027 family		CDS	FIG00823034: hypothetical protein			0	0	0	
aldehyde dehydrogenase, dimeric NADP-preferring	1.2.1.5	Aldh3a1	NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	Aldehyde dehydrogenase	1.2.1.3		base_ec-d	base_ec-d	base_ec	
putative short-chain type dehydrogenase/reductase Rv0148			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Short-chain dehydrogenase/reductase SDR			0	tf_idf	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820781: hypothetical protein			lit-s	base_one HP	base_one HP	
zinc-binding dehydrogenase family protein			NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	Quinone oxidoreductase	1.6.5.5		0	0	base_ec	
PE family protein			PE-PPE domain./PE family.		CDS	PE family protein			0	base_lit-s	0	
PE-PPE domain protein			PE-PPE domain.		CDS	PE family protein			lit-s	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
tyrosine phosphatase family protein			Protein tyrosine/serine phosphatase	3.1.3.48	CDS	Protein tyrosine phosphatase	3.1.3.48		map	lit-s	base_ec	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases	1.3.99.3	CDS	Butyryl-CoA dehydrogenase	1.3.99.2		0	0	base_ec-d	
alanine dehydrogenase/pyridine nucleotide transhydrogenase			NAD/NADP transhydrogenase alpha subunit	1.6.1.2	CDS	NAD(P) transhydrogenase alpha subunit	1.6.1.2		0	0	base_ec	
conserved hypothetical protein			NAD/NADP transhydrogenase alpha subunit	1.6.1.2	CDS	NAD(P) transhydrogenase alpha subunit	1.6.1.2		base_one HP	base_one HP	base_ec	
NAD(P) transhydrogenase beta subunit			NAD/NADP transhydrogenase beta subunit	1.6.1.2	CDS	NAD(P) transhydrogenase subunit beta	1.6.1.2		orth	lit-s	base_ec	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
PE family protein			PE-PPE domain./PE family.		CDS	PE family protein			0	base_lit-s	0	
PE family protein			PE-PPE domain./PE family.		CDS	PE family protein			0	base_lit-s	0	
FAD linked oxidase, C-terminal domain protein			FAD/FMN-containing dehydrogenases		CDS	putative oxidoreductase			0	0	0	
zinc-binding dehydrogenase family protein			Zn-dependent alcohol dehydrogenases, class III	1.1.1.1	CDS	Alcohol dehydrogenase	1.1.1.1		0	0	base_ec	
thioesterase superfamily protein			Predicted thioesterase	3.1.2.-	CDS	putative 4-hydroxybenzoyl-CoA thioesterase			lit-s	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Oligoketide cyclase/lipid transport protein		CDS	FIG00820956: hypothetical protein			0	0	0	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"Predicted regulator PutR for proline utilization, GntR family"			gs-sh	gs-sh	pfam-sh	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1A			0	0	0	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1B			0	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1A			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1B			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1C			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1D			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1F			gs-sh	0	0	
putative cONSERVED MCE ASSOCIATED MEMBRANE PROTEIN			hypothetical protein		CDS	FIG033430: Probable conserved MCE associated membrane protein			base_one HP	lit-s	base_one HP	
RDD family protein			Predicted membrane protein/domain		CDS	FIG033285: Conserved MCE associated transmembrane protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG034772: Probable conserved MCE associated protein			lit-s	base_one HP	base_one HP	
putative predicted protein			hypothetical protein		CDS	FIG030769: Probable conserved MCE associated membrane protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Predicted periplasmic protein (DUF2233).		CDS	Possible lipoprotein LprO			base_one HP	base_one HP	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Possible membrane protein			base_one HP	base_one HP	lit-s	
pirin family protein			Pirin-related protein		CDS	Pirin-like protein Rv0181c/MT0192			0	0	0	
RNA polymerase sigma factor, sigma-70 family protein			RNA polymerase, sigma subunit, ECF family		CDS	RNA polymerase factor sigma-70			tf_idf	tf_idf	tf_idf	
dienelactone hydrolase family protein			Lysophospholipase		CDS	"lysophospholipase, putative"			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2786).		CDS	FIG00819976: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820103: hypothetical protein			lit-s	base_one HP	base_one HP	
glycosyl hydrolase family 3 C-terminal domain protein			Beta-glucosidase-related glycosidases	3.2.1.21	CDS	Beta-glucosidase	3.2.1.21		0	0	base_ec	
O-methyltransferase family protein			Predicted O-methyltransferase		CDS	O-methyltransferase			lit-s	lit-s	lit-s	
SPW repeat family protein			SPW repeat.		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			lit-s	0	0	
dihydroxy-acid dehydratase	4.2.1.9	ilvD	dihydroxyacid dehydratase (EC 4.2.1.9)	4.2.1.9	CDS	Dihydroxy-acid dehydratase	4.2.1.9		base_tigr	base_ec	base_ec	
metal-sensitive transcriptional repressor family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820970: hypothetical protein			0	0	lit-s	
major Facilitator Superfamily protein			Arabinose efflux permease		CDS	"Integral membrane protein, sugar transporter"			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
L,D-transpeptidase catalytic domain protein			peptidoglycan transpeptidase precursor, ErfK-YbiS-YhnG family		CDS	YkuD domain-containing hypothetical lipoprotein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821418: hypothetical protein			lit-s	base_one HP	base_one HP	
lipid A export permease/ATP-binding protein MsbA		msbA	ABC-type multidrug transport system, ATPase and permease components		CDS	ATP binding cassette (ABC) transporter homolog			gs-sh	0	0	
bacterial regulatory s, luxR family protein			Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	"Transcriptional regulator, LuxR family"			gs-sh	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
peptidase M13 family protein			endothelin-converting enzyme. Metallo peptidase. MEROPS family M13	3.4.24.-,3.4.24.71	CDS	Metallopeptidase			0	0	0	
molydopterin dinucleotide binding domain protein			Anaerobic dehydrogenases, typically selenocysteine-containing		CDS	"Formate dehydrogenase-O, major subunit"	1.2.1.2		0	0	0	
putative conserved membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821048: hypothetical protein			lit-s	base_one HP	base_one HP	
putative conserved transmembrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
MMPL family protein			Predicted drug exporters of the RND superfamily		CDS	Transmembrane transport protein MmpL13			0	0	0	
putative exported protein			hypothetical protein		CDS	POSSIBLE EXPORTED PROTEIN			base_one HP	lit-s	base_one HP	
TIGR00374 family protein			Predicted integral membrane protein		CDS	Possible membrane protein			base_tigr	0	0	
MMPL family protein			Predicted drug exporters of the RND superfamily		CDS	Transmembrane transport protein MmpL5			0	0	0	
conserved hypothetical protein			Predicted permease		CDS	Possible membrane protein			base_one HP	base_one HP	0	
NYN domain protein			NYN domain.		CDS	FIG01001556: hypothetical protein			lit-s	0	0	
tRNA (guanine-N(7)-)-methyltransferase	2.1.1.33	trmB	tRNA (guanine-N(7)-)-methyltransferase	2.1.1.33	CDS	tRNA (guanine46-N7-)-methyltransferase	2.1.1.33		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG032248: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG033897: hypothetical protein			lit-s	base_one HP	base_one HP	
phosphoenolpyruvate carboxykinase [GTP]	4.1.1.32	pckG	Phosphoenolpyruvate carboxykinase (GTP)	4.1.1.32	CDS	Phosphoenolpyruvate carboxykinase [GTP]	4.1.1.32		base_ec	base_ec	base_ec	
nicotinamide-nucleotide adenylyltransferase	2.7.7.1		nicotinamide-nucleotide adenylyltransferase, NadR type		CDS	"Nicotinamide-nucleotide adenylyltransferase, NadR family / Ribosylnicotinamide kinase"	2.7.7.1, 2.7.1.22		0	base_ec-d	0	
radical SAM superfamily protein			Fe-S oxidoreductase		CDS	POSSIBLE METHYLTRANSFERASE (METHYLASE)			0	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.3	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	map	base_ec	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	putative acyl-CoA dehydrogenase fadE3( EC:1.3.99.- )			0	tf_idf	0	
alpha/beta hydrolase fold family protein			Esterase/lipase		CDS	Esterase LipW			0	0	orth	
conserved hypothetical protein			Acyl dehydratase		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
oxidoreductase molybdopterin binding domain protein			Sulfite oxidase and related enzymes		CDS	Possible membrane protein			0	0	0	
putative conserved transmembrane protein			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	lit-s	base_one HP	
alpha/beta hydrolase fold family protein			Esterase/lipase	3.1.1.-	CDS	Esterase LipC			orth	orth	orth	
acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		acyltransferase, WS/DGAT/MGAT		CDS	Diacyglycerol O-acyltransferase	2.3.1.20		base_tigr	0	0	
enoyl-CoA hydratase EchA1		echA1	short chain enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		gs-sh	gs-sh	base_ec	
aldehyde dehydrogenase family protein			NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	Aldehyde dehydrogenase	1.2.1.3		map	lit-s	base_ec	
ubiE/COQ5 methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	POSSIBLE METHYLTRANSFERASE (METHYLASE)			gs-sh	0	0	
glycosyl transferases group 1 family protein			Glycosyltransferase		CDS	Glycosyltransferase	2.4.1.-		0	0	base_lit-s	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3068).		CDS	PROBABLE CONSERVED MEMBRANE PROTEIN			base_one HP	base_one HP	0	
acyltransferase family protein			Predicted acyltransferases		CDS	Lysophospholipid acyltransferase			0	0	0	
putative ribonuclease VapC21			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			0	0	gs-sh	
toxin domain protein			hypothetical protein		CDS	FIG00821454: hypothetical protein			base_one HP	0	base_one HP	
aryldialkylphosphatase	3.1.8.1	php	Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	Phosphotriesterase homology protein			gs-sh	orth	orth	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases	1.3.99.3	CDS	Acyl-CoA dehydrogenase	1.3.99.3		map	lit-s	base_ec	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
R2-like ligand binding oxidase	1.-.-.-		Ribonucleotide reductase, beta subunit	1.17.4.1	CDS	Ribonucleotide-diphosphate reductase subunit beta	1.17.4.1		orth	orth	base_ec	
aldehyde dehydrogenase family protein			NAD-dependent aldehyde dehydrogenases	1.2.1.16	CDS	Succinate-semialdehyde dehydrogenase [NAD]; Succinate-semialdehyde dehydrogenase [NADP+]	1.2.1.24, 1.2.1.16		0	tf_idf	base_ec-d	
lipase maturation factor 1		Lmf1	Lipase maturation factor.		CDS	Possible membrane protein			gs-sh	0	0	
F5/8 type C domain protein			Domain of unknown function (DUF3367)./F5/8 type C domain.		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2613).		CDS	SMALL SECRETED PROTEIN			base_one HP	base_one HP	0	
glycosyl hydrolase family 3 N terminal domain protein			Beta-glucosidase-related glycosidases	3.2.1.21	CDS	Beta-hexosaminidase	3.2.1.52		0	0	base_ec-d	
putative transcriptional regulator			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
putative antitoxin VapB24			hypothetical protein		CDS	FIG00821638: hypothetical protein			base_one HP	0	base_one HP	
mycobacterium tuberculosis PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00823838: hypothetical protein			base_tigr	0	0	
maoC like domain protein			Acyl dehydratase		CDS	Acyl dehydratase			gs-sh	gs-sh	base_lit-s	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		0	0	base_ec	
acetyl-CoA C-acetyltransferase family protein			3-ketoacyl-CoA thiolase	2.3.1.9,2.3.1.16	CDS	3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase	2.3.1.16, 2.3.1.9		base_tigr	0	base_ec-d	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	PROBABLE ACYL-COA DEHYDROGENASE FADE5( EC:1.3.99.- )			0	tf_idf	0	
flavin reductase like domain protein			Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	Nitrilotriacetate monooxygenase component B	1.14.13.-		0	0	0	
succinate dehydrogenase and fumarate reductase iron-sulfur family protein			succinate dehydrogenase subunit B	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase iron-sulfur protein	1.3.99.1		base_tigr	tf_idf	base_ec-d	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
pyridine nucleotide-disulfide oxidoreductase family protein			succinate dehydrogenase subunit A	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase flavoprotein subunit	1.3.99.1		0	0	base_ec-d	
putative membrane protein			hypothetical protein		CDS	putative succinate dehydrogenase [membrane anchor subunit] (succinic dehydrogenase)			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820825: hypothetical protein			lit-s	base_one HP	base_one HP	
hsp20/alpha crystallin family protein			Molecular chaperone (small heat shock protein)		CDS	Heat shock protein hsp			0	orth	0	
nitrite reductase [NAD(P)H], large subunit	1.7.1.4	nirB	assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4)	1.7.1.4	CDS	Nitrite reductase [NAD(P)H] large subunit	1.7.1.4		base_tigr	base_ec	base_ec	
nitrite reductase [NAD(P)H], small subunit	1.7.1.4	nirD	nitrite reductase [NAD(P)H], small subunit	1.7.1.4	CDS	Nitrite reductase [NAD(P)H] small subunit	1.7.1.4		base_lit-s	base_ec	base_ec	
cobinamide kinase / cobinamide phosphate guanyltransferase family protein			adenosylcobinamide kinase (EC 2.7.1.156)/adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62)	2.7.1.156, 2.7.7.62	CDS	Adenosylcobinamide-phosphate guanylyltransferase	2.7.7.62		0	0	base_ec-d	
cobyric acid synthase CobQ	6.3.5.10	cobQ	adenosylcobyric acid synthase (glutamine-hydrolysing) (EC 6.3.5.10)	6.3.5.10	CDS	Cobyric acid synthase			base_tigr	gs-sh	map	
PPE family protein			PPE-repeat proteins		CDS	Predicted cobalt transporter in Mycobacteria			pfam-sh	0	0	
conserved hypothetical protein			transcriptional regulator, TetR family		CDS	FIG00825710: hypothetical protein			base_one HP	base_one HP	0	
cbiX family protein			Uncharacterized conserved protein		CDS	Sirohydrochlorin ferrochelatase	4.99.1.4		gs-sh	0	0	
uroporphyrinogen-III synthase HemD family protein			Uroporphyrinogen-III synthase	4.2.1.75	CDS	Bifunctional uroporphyrinogen-III synthetase/response regulator domain protein			gs-sh	0	0	
major Facilitator Superfamily protein			Nitrate/nitrite transporter		CDS	Nitrate/nitrite transporter			0	0	base_lit-s	
aminoglycoside 2'-N-acetyltransferase	2.3.1.-	aac	Predicted acetyltransferase		CDS	Aminoglycoside 2'-N-acetyltransferase AAC (AAC(2')-IC)			gs-sh	0	0	
allophanate hydrolase subunit 2			biotin-dependent carboxylase uncharacterized domain		CDS	Allophanate hydrolase 2 subunit 2	3.5.1.54		0	lit-s	0	
allophanate hydrolase subunit 1			Allophanate hydrolase subunit 1		CDS	Allophanate hydrolase 2 subunit 1	3.5.1.54		lit-s	0	0	
periplasmic binding family protein			ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	"ABC transporter, periplasmic iron-transport lipoprotein"			0	0	0	
hydantoinase B/oxoprolinase family protein			5-oxoprolinase (ATP-hydrolysing) (EC 3.5.2.9)	3.5.2.9	CDS	"Similar to 5-oxoprolinase and Methylhydantoinases A, B, contradiction in experimental data (see Annotation)"	3.5.2.9, 3.5.2.14		0	0	base_ec-d	
nitrite extrusion protein 1		narK	nitrite extrusion protein (nitrite facilitator)		CDS	Nitrate/nitrite transporter			gs-sh	gs-sh	map	
prevent-host-death family protein			prevent-host-death family protein		CDS	FIG00820728: hypothetical protein			base_lit-s	0	0	
eukaryotic and archaeal DNA primase small subunit			Predicted eukaryotic-type DNA primase		CDS	ATP-dependent DNA ligase	6.5.1.1		0	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	FadE6			0	0	0	
alpha/beta hydrolase family protein			Alpha/beta hydrolase family.		CDS	FIG00820646: hypothetical protein			lit-s	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
			Lactoylglutathione lyase and related lyases		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820338: hypothetical protein			base_one HP	base_one HP	lit-s	
putative ribonuclease VapC25			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00820219: hypothetical protein			0	0	0	
antitoxin VapB25		vapB25				FIG00820304: hypothetical protein			base_one miss	0	base_one miss	
PE family protein			hypothetical protein		CDS	PE-PGRS FAMILY PROTEIN			base_one HP	0	base_one HP	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			methyltransferase, putative, TIGR00027 family		CDS	O-Methyltransferase			0	0	0	
type VII secretion AAA-ATPase EccA		eccA	type VII secretion AAA-ATPase EccA		CDS	"AAA family ATPase, ESX-1 secretion system component Rv3868"			base_lit-s	pfam-sh	pfam-sh	
type VII secretion protein EccB		eccB	type VII secretion protein EccB, Actinobacterial		CDS	Type VII secretion protein EccB			base_tigr	lit-s	map	
type VII secretion protein EccCb		eccCb	type VII secretion protein EccCa/type VII secretion protein EccCb		CDS	Type VII secretion protein EccCa			0	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
pe family protein			Proteins of 100 residues with WXG.		CDS	PE family protein			0	lit-s	0	
ESAT-6-like protein esxH		esxH	WXG100 family type VII secretion target		CDS	10 kDa antigen CFP7			gs-sh	0	0	
espG family protein			EspG family.		CDS	RD1 region associated protein Rv3866			lit-s	0	0	
type VII secretion integral membrane protein EccD		eccD	type VII secretion integral membrane protein EccD		CDS	ESX-3 secretion system protein EccD3			base_lit-s	0	0	
type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	Type VII secretion-associated serine protease mycosin MycP3			base_lit-s	0	0	
alpha/beta hydrolase family protein			Esterase/lipase		CDS	FIG00821889: hypothetical protein			0	0	0	
type VII secretion protein EccE		eccE	type VII secretion protein EccE		CDS	ESX-3 secretion system protein EccE3			base_lit-s	0	0	
sulfotransferase			Uncharacterized protein conserved in bacteria		CDS	Sulfotransferase			0	lit-s	0	
methyltransferase domain protein			Trans-aconitate methyltransferase	2.1.1.144	CDS	Trans-aconitate 2-methyltransferase	2.1.1.144		0	0	base_ec	
type I phosphodiesterase / nucleotide pyrophosphatase family protein			Arylsulfatase A and related enzymes		CDS	Choline-sulfatase	3.1.6.6		0	0	0	
PE family protein			PE family.		CDS	PE-PGRS family protein			lit-s	0	0	
antitoxin Rv0298/MT0312			Ribbon-helix-helix protein, copG family.		CDS	Programmed cell death antitoxin YdcD			0	0	0	
toxin Rv0299			hypothetical protein		CDS	Programmed cell death toxin YdcE			base_one HP	0	base_one HP	
			Ribbon-helix-helix protein, copG family.		CDS	FIG00821978: hypothetical protein			base_one miss	base_one miss	0	
ribonuclease VapC2	3.1.-.-	vapC2	Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG036853: hypothetical protein			gs-sh	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	TetR/ACRR family transcriptional regulator			gs-sh	gs-sh	pfam-sh	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	"""Oxidoreductase, short-chain dehydrogenase/reductase family"""			0	0	0	
pentapeptide repeats family protein			Pentapeptide repeats (8 copies).		CDS	PPE family protein			0	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
putative conserved protein			hypothetical protein		CDS	FIG00820335: hypothetical protein			base_one HP	lit-s	base_one HP	
5,6-dimethylbenzimidazole synthase	1.14.99.40	bluB	cob(II)yrinic acid a,c-diamide reductase/5,6-dimethylbenzimidazole synthase	1.14.99.40,1.16.8.1, 1.14.99.40	CDS	"Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family"			base_tigr	0	0	
PAP2 superfamily protein			Membrane-associated phospholipid phosphatase		CDS	Possible membrane protein			orth	0	0	
L,D-transpeptidase catalytic domain protein			Uncharacterized protein conserved in bacteria		CDS	FIG019540: hypothetical protein			0	0	lit-s	
snoaL-like domain protein			SnoaL-like domain.		CDS	Bile acid 7-alpha dehydratase BaiE	4.2.1.106		lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823053: hypothetical protein			lit-s	base_one HP	base_one HP	
hsp70 family protein			Molecular chaperone		CDS	Proline and threonine rich protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822480: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3060).		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	base_one HP	gs-sh	
glycosyl hydrolases family protein 16			Beta-glucanase/Beta-glucan synthetase		CDS	"""Possible beta-1,3-glucanase"""			0	0	0	
muconolactone delta-isomerase family protein			Muconolactone delta-isomerase		CDS	Muconolactone isomerase	5.3.3.4		lit-s	map	orth	
glycerophosphoryl diester phosphodiesterase family protein			Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	Glycerophosphoryl diester phosphodiesterase	3.1.4.46		lit-s	lit-s	base_lit-s	
ZIP Zinc transporter family protein			Predicted divalent heavy-metal cations transporter		CDS	Possible membrane protein			orth	0	0	
pyroglutamyl-peptidase I	3.4.19.3	pcp	pyroglutamyl-peptidase I (EC:3.4.19.3). Cysteine peptidase. MEROPS family C15	3.4.19.3	CDS	Pyrrolidone-carboxylate peptidase	3.4.19.3		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	Possible conserved exported protein			lit-s	base_one HP	base_one HP	
deoxycytidine triphosphate deaminase	3.5.4.13	dcd	dCTP deaminase (EC 3.5.4.13)	3.5.4.13	CDS	Deoxycytidine triphosphate deaminase (dUMP-forming)	3.5.4.30		base_tigr	base_ec-d	base_ec-d	
glcNAc-PI de-N-acetylase family protein			Uncharacterized proteins, LmbE homologs		CDS	FIG030768: hypothetical protein			0	0	0	
nucleotide sugar dehydrogenase family protein			nucleotide sugar dehydrogenase	1.1.1.22	CDS	UDP-glucose dehydrogenase	1.1.1.22		base_tigr	map	base_ec	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	"Transcriptional regulator, ArsR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Methyltransferase	2.1.1.-		lit-s	base_one HP	base_one HP	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 135A1			lit-s	tf_idf	tf_idf	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methylated-DNA--protein-cysteine methyltransferase	2.1.1.63		0	0	0	
ubiE/COQ5 methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	FIG034077: hypothetical protein			gs-sh	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	HTH-type transcriptional regulator BetI			gs-sh	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
pyridine nucleotide-disulfide oxidoreductase family protein			Uncharacterized NAD(FAD)-dependent dehydrogenases		CDS	Oxidoreductase (flavoprotein)			0	0	0	
conserved hypothetical protein			uncharacterized Actinobacterial protein TIGR03083		CDS	FIG00820643: hypothetical protein			base_one HP	base_one HP	0	
snoaL-like domain protein			SnoaL-like domain.		CDS	FIG00820524: hypothetical protein			lit-s	0	0	
glucose-1-phosphate thymidylyltransferase	2.7.7.24	rfbA	Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24)	2.7.7.24	CDS	Glucose-1-phosphate thymidylyltransferase	2.7.7.24		base_tigr	base_ec	base_ec	
PE family protein						PE family protein			base_one miss	base_lit-s	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	13E12 repeat family protein			base_one HP	base_one HP	0	
aminotransferase class-V family protein			L-aspartate aminotransferase apoenzyme	2.6.1.2, 2.6.1.66,2.6.1.1	CDS	aspartate aminotransferase AspC			0	0	0	
4Fe-4S dicluster domain protein			Fe-S oxidoreductase		CDS	Iron-sulphur-binding reductase			0	0	0	
bacterial regulatory s, luxR family protein			Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain		CDS	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820657: hypothetical protein			lit-s	base_one HP	base_one HP	
putative isoniazid-inductible protein iniB			hypothetical protein		CDS	Isoniazid inductible protein IniB			base_one HP	0	base_one HP	
isoniazid-inductible protein iniA		iniA	Predicted GTPases (dynamin-related)		CDS	Isoniazid inductible protein IniA			gs-sh	0	0	
50S ribosome-binding GTPase family protein			Dynamin family.		CDS	Isoniazid inductible protein IniC			0	0	0	
putative lpqJ protein			hypothetical protein		CDS	Lipoprotein LpqJ			base_one HP	gs-sh	base_one HP	
hypothetical protein						hypothetical protein			base_one HP	base_lit-s	base_one HP	
mobA-like NTP transferase domain protein			MobA-like NTP transferase domain.		CDS	CTP:molybdopterin cytidylyltransferase			lit-s	0	0	
amino acid permease family protein			asparagine:proton symporter, AAT family (TC 2.A.3.1.8)		CDS	L-asparagine permease			0	tf_idf	0	
hypothetical protein						hypothetical protein			base_one HP	base_lit-s	base_one HP	
TIGR04255 family protein			hypothetical protein		CDS	FIG047027: hypothetical protein			base_one HP	lit-s	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00821445: hypothetical protein			base_lit-s	base_one HP	base_one HP	
putative transcriptional regulator			hypothetical protein		CDS	FIG046367: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820329: hypothetical protein			lit-s	base_one HP	base_one HP	
chaperone protein DnaK		dnaK	chaperone protein DnaK		CDS	Chaperone protein DnaK			base_lit-s	lit-s	lit-s	
grpE family protein			Molecular chaperone GrpE (heat shock protein)		CDS	Heat shock protein GrpE			gs-sh	gs-sh	pfam-sh	
chaperone protein DnaJ		dnaJ	chaperone protein DnaJ		CDS	Chaperone protein DnaJ			base_lit-s	lit-s	lit-s	
merR regulatory family protein			Predicted transcriptional regulators		CDS	"HspR, transcriptional repressor of DnaK operon"			gs-sh	gs-sh	gs-sh	
pPE FAMILY PROTEIN		PPE7	hypothetical protein		CDS	PPE family protein			base_one HP	lit-s	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
thioesterase superfamily protein			Uncharacterized protein, possibly involved in aromatic compounds catabolism		CDS	FIG00822066: hypothetical protein			0	0	0	
adenylosuccinate synthase	6.3.4.4	purA	Adenylosuccinate synthetase (EC 6.3.4.4)	6.3.4.4	CDS	Adenylosuccinate synthetase	6.3.4.4		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820475: hypothetical protein			lit-s	base_one HP	base_one HP	
peptidase M50 family protein			Zn-dependent proteases		CDS	Possible membrane protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3151).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	PROBABLE CONSERVED MEMBRANE PROTEIN			lit-s	base_one HP	base_one HP	
magnesium transporter		mgtE	Mg2+ transporter (mgtE)		CDS	Mg/Co/Ni transporter MgtE / CBS domain			base_tigr	0	0	
fructose-bisphosphate aldolase, class II	4.1.2.13	fbaA	fructose-bisphosphate aldolase (EC 4.1.2.13)	4.1.2.13	CDS	Fructose-bisphosphate aldolase class II	4.1.2.13		base_ec	base_ec	base_ec	
glycosyl hydrolase 76 family protein			Predicted glycosyl hydrolase		CDS	fructose-bisphosphate aldolase family protein			orth	orth	orth	
conserved hypothetical protein			Uncharacterized membrane-associated protein		CDS	DedA protein			base_one HP	base_one HP	gs-sh	
zeta toxin family protein			Uncharacterized protein conserved in bacteria		CDS	FIG027960: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF3423).		CDS	FIG00824223: hypothetical protein			base_one HP	base_one HP	lit-s	
VWA domain containing CoxE-like family protein			Protein containing von Willebrand factor type A (vWA) domain		CDS	Carbon monoxide oxidation accessory protein CoxE			0	0	0	
carbon monoxide dehydrogenase subunit G family protein			Uncharacterized conserved protein		CDS	Carbon monoxide oxidation accessory protein CoxG			0	0	0	
AAA domain family protein			MoxR-like ATPases		CDS	Carbon monoxide oxidation accessory protein CoxD			0	0	0	
moba relate protein			Uncharacterized MobA-related protein		CDS	Uncharacterized MobA-related protein			0	0	base_lit-s	
xdhC and CoxI family protein			Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family		CDS	Aerobic carbon monoxide dehydrogenase molybdenum cofactor insertion protein CoxF			gs-sh	gs-sh	gs-sh	
carbon-monoxide dehydrogenase, large subunit	1.2.99.2		carbon monoxide dehydrogenase, large subunit apoprotein	1.2.99.2	CDS	"Carbon monoxide dehydrogenase form I, large chain( EC:1.2.99.2 )"			base_tigr	0	0	
carbon monoxide dehydrogenase small chain	1.2.99.2	coxS	Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs	1.2.99.2	CDS	Carbon monoxide dehydrogenase small chain	1.2.99.2		base_ec	base_ec	base_ec	
FAD binding domain in molybdopterin dehydrogenase family protein			carbon monoxide dehydrogenase, medium subunit	1.2.99.2	CDS	Carbon monoxide dehydrogenase medium chain	1.2.99.2		0	0	base_ec	
xanthine dehydrogenase			Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family		CDS	"CO dehydrogenases maturation factor, CoxF family"			0	0	gs-sh	
bacterial regulatory helix-turn-helix , lysR family protein			transcriptional regulator, LysR family		CDS	Transcription regulator in CO-DH cluster			gs-sh	0	0	
hypothetical protein			hypothetical protein		CDS	PE_PGRS family protein			base_lit-s	base_one HP	base_one HP	
dodecin family protein			Uncharacterized conserved protein		CDS	Preprotein translocase subunit SecE2			0	0	0	
spoU rRNA Methylase family protein			rRNA methylases		CDS	probable RNA methyltransferase			gs-sh	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein Rv0381c			lit-s	base_one HP	base_one HP	
orotate phosphoribosyltransferase	2.4.2.10	pyrE	orotate phosphoribosyltransferase (EC 2.4.2.10)	2.4.2.10	CDS	Orotate phosphoribosyltransferase	2.4.2.10		base_tigr	base_ec	base_ec	
putative conserved secreted protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
ATP-dependent chaperone protein ClpB		clpB	ATP-dependent chaperone ClpB		CDS	ClpB protein			base_tigr	gs-sh	map	
oxidoreductase NAD-binding domain protein			2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases		CDS	Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase)	1.14.12.17		0	0	0	
bacterial regulatory s, luxR family protein			Predicted ATPase		CDS	"Adenylyl cyclase class-3/4/guanylyl cyclase / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein / Transcriptional regulator, LuxR family"			gs-sh	0	0	
polymorphic PE/PPE s C terminal family protein			Polymorphic PE/PPE proteins C terminal.		CDS	PPE family protein			pfam-sh	pfam-sh	pfam-sh	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
putative predicted protein						FIG00822289: hypothetical protein			base_one miss	lit-s	base_one miss	
phosphoribosylglycinamide formyltransferase 2	2.1.2.-	purT	formate-dependent phosphoribosylglycinamide formyltransferase	2.1.2.2,6.3.4.-	CDS	Phosphoribosylglycinamide formyltransferase 2	2.1.2.-		base_tigr	lit-s	map	
rhodanese-like domain protein			Rhodanese-related sulfurtransferase		CDS	Rhodanese-related sulfurtransferase			0	0	base_lit-s	
glucose inhibited division A family protein			NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	NADH dehydrogenase	1.6.99.3		0	0	base_ec	
O-succinylhomoserine sulfhydrylase	4.2.99.-	metZ	O-succinylhomoserine sulfhydrylase	2.5.1.-	CDS	O-acetylhomoserine sulfhydrylase	2.5.1.49		base_lit-s	0	0	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	CONSERVED 13E12 REPEAT FAMILY PROTEIN			base_one HP	base_one HP	0	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	13E12 repeat family protein			base_one HP	base_one HP	0	
putative secreted protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00820904: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821159: hypothetical protein			lit-s	base_one HP	base_one HP	
putative hNH endonuclease			hypothetical protein		CDS	13E12 repeat family protein			base_one HP	0	base_one HP	
putative secreted protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		0	0	0	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases	1.3.99.7	CDS	Glutaryl-CoA dehydrogenase	1.3.99.7		map	tf_idf	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3054).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
transport family protein			Transport protein		CDS	Transmembrane transport protein MmpL1			base_tigr	0	0	
mycobacterium membrane family protein			Mycobacterium membrane protein.		CDS	"membrane protein, MmpS family"			lit-s	0	0	
long-chain-fatty-acid--AMP ligase FadD30	6.2.1.-	fadD30	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
			Zn-dependent hydrolases, including glyoxylases		CDS				base_one miss	base_both miss	base_one miss	
phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	Polyketide synthase modules and related proteins		CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		gs-sh	base_ec-d	0	
glucose-6-phosphate dehydrogenase	1.1.98.2	fgd	glucose-6-phosphate dehydrogenase (coenzyme-F420)	1.1.98.2	CDS	F420-dependent glucose-6-phosphate dehydrogenase			base_ec	0	0	
phosphate acetyltransferase	2.3.1.8	pta	phosphotransacetylase (EC 2.3.1.8)	2.3.1.8	CDS	Phosphate acetyltransferase	2.3.1.8		base_tigr	base_ec	base_ec	
acetate kinase	2.7.2.1	ackA	acetate kinase (EC 2.7.2.1)	2.7.2.1	CDS	Acetate kinase	2.7.2.1		base_tigr	base_ec	base_ec	
putative serine/threonine-protein kinase pknG			Protein kinase domain.	2.7.11.1	CDS	serine/threonine protein kinase			gs-sh	map	tf_idf	
bacterial extracellular solute-binding s, 3 family protein			amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)		CDS	"""Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)"""			0	0	0	
putative cONSERVED MEMBRANE PROTEIN			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
thiamine-phosphate pyrophosphorylase	2.5.1.3	thiE	thiamine-phosphate diphosphorylase	2.5.1.3	CDS	Thiamin-phosphate pyrophosphorylase	2.5.1.3		base_tigr	base_ec	base_ec	
NUDIX domain protein			ADP-ribose pyrophosphatase	3.6.1.-	CDS	"""Possible mutator protein MutT3 (7,8-dihydro-8-oxoguanine-triphosphatase) """			0	0	0	
glycine oxidase ThiO	1.4.3.19	thiO	glycine oxidase (EC 1.4.3.19)	1.4.3.19	CDS	Glycine oxidase ThiO	1.4.3.19		base_tigr	base_ec	base_ec	
thiamine biosynthesis protein ThiS		thiS	thiamine biosynthesis protein ThiS		CDS	sulfur carrier protein ThiS			base_lit-s	pfam-sh	pfam-sh	
thiazole synthase	4.-.-.-	thiG	thiazole-phosphate synthase		CDS	Thiazole biosynthesis protein ThiG			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein						FIG00822290: hypothetical protein			base_one HP	base_one HP	base_one miss	
peptidase M20/M25/M40 family protein			aminopeptidase Y (EC:3.4.11.15). Metallo peptidase. MEROPS family M28A	3.4.11.-	CDS	"Aminopeptidase Y (Arg, Lys, Leu preference)"	3.4.11.15		0	0	0	
putative tRANSMEMBRANE PROTEIN			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
neutral zinc metallopeptidase family protein			Predicted metalloprotease		CDS	Lipoprotein peptidase LpqM			0	0	orth	
alpha/beta hydrolase family protein			Predicted hydrolase of the alpha/beta-hydrolase fold		CDS	FIG022825: hypothetical protein			0	0	0	
phosphomethylpyrimidine kinase	2.7.4.7	thiD	phosphomethylpyrimidine kinase	2.7.4.7, 2.7.1.49	CDS	Phosphomethylpyrimidine kinase	2.7.4.7		base_lit-s	base_ec	base_ec-d	
thiamine biosynthesis protein ThiC		thiC	hydroxymethylpyrimidine synthase		CDS	Thiamin biosynthesis protein ThiC			base_tigr	pfam-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821936: hypothetical protein			lit-s	base_one HP	base_one HP	
HAD ATPase, P-type, IC family protein	3.6.3.-		ATPase, P-type (transporting), HAD superfamily, subfamily IC		CDS	Metal cation transporting P-type ATPase CtpH			base_tigr	0	0	
putative transmembrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
exodeoxyribonuclease III	3.1.11.2	xth	Exodeoxyribonuclease III (EC 3.1.11.2)	3.1.11.2	CDS	Exodeoxyribonuclease III	3.1.11.2		base_ec	base_ec	base_ec	
putative acetyltransferase			hypothetical protein		CDS	Histone acetyltransferase HPA2 and related acetyltransferases			base_one HP	0	base_one HP	
peptide deformylase	3.5.1.88	def	peptide deformylase	3.5.1.88	CDS	Peptide deformylase	3.5.1.88		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3263).		CDS	FIG00822394: hypothetical protein			base_one HP	base_one HP	lit-s	
lytR cell envelope-related transcriptional attenuator family protein			LytR cell envelope-related transcriptional attenuator.		CDS	Tuberculin related peptide			lit-s	0	0	
superoxide dismutase [Cu-Zn]	1.15.1.1	sodC	Cu/Zn superoxide dismutase	1.15.1.1	CDS	Superoxide dismutase [Cu-Zn] precursor	1.15.1.1		base_ec	base_ec	base_ec	
carboxylate-amine ligase, YbdK family protein	6.3.-.-		carboxylate-amine ligase, YbdK family	6.3.-	CDS	Carboxylate-amine ligase			base_tigr	0	0	
ATP-dependent protease La domain protein			Uncharacterized protein, similar to the N-terminal domain of Lon protease		CDS	"Uncharacterized protein, similar to the N-terminal domain of Lon protease"			0	0	lit-s	
spermatogenesis-associated 5 domain protein		SPATA5	ATPases of the AAA+ class		CDS	Cell division protein FtsH	3.4.24.-		gs-sh	gs-sh	gs-sh	
CDP-diacylglycerol-serine O-phosphatidyltransferase	2.7.8.8	pssA	CDP-diacylglycerol--serine O-phosphatidyltransferase	2.7.8.8	CDS	CDP-diacylglycerol--serine O-phosphatidyltransferase	2.7.8.8		base_tigr	base_ec	base_lit-s	
phosphatidylserine decarboxylase family protein			phosphatidylserine decarboxylase precursor-related protein	4.1.1.65	CDS	Phosphatidylserine decarboxylase	4.1.1.65		tf_idf	lit-s	base_ec	
molybdenum cofactor synthesis domain protein			molybdopterin molybdochelatase	2.10.1.1	CDS	Molybdopterin biosynthesis protein MoeA			base_tigr	map	gs-sh	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	probable oxidoreductase/Short-chain dehydrogenase			0	0	0	
chaperonin GroL		groL	chaperonin GroL		CDS	Heat shock protein 60 family chaperone GroEL			base_lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00825576: hypothetical protein			lit-s	base_one HP	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
dinB superfamily protein			Protein of unknown function (DUF664).		CDS	FIG00820451: hypothetical protein			gs-sh	0	lit-s	
anti-sigma-K factor rskA		rskA	Uncharacterized protein conserved in bacteria		CDS	FIG111991: hypothetical protein			gs-sh	0	lit-s	
RNA polymerase sigma factor, sigma-70 family protein			RNA polymerase sigma factor, sigma-70 family		CDS	alternative RNA polymerase sigma factor SigK			base_tigr	tf_idf	tf_idf	
conserved hypothetical protein			Predicted membrane protein		CDS	FIG005069: Hypothetical protein			base_one HP	base_one HP	0	
mycolic acid cyclopropane synthetase family protein			Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	"Cyclopropane-fatty-acyl-phospholipid synthase, plant type"	2.1.1.79		0	0	base_ec	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG001571: Hypothetical protein			base_one HP	base_one HP	lit-s	
flavin containing amine oxidoreductase family protein			Predicted NAD/FAD-binding protein		CDS	"COG2907: Amine oxidase, flavin-containing"			0	0	0	
transport family protein			Transport protein		CDS	Transmembrane transport protein MmpL4			base_tigr	0	0	
mycobacterium membrane family protein			Mycobacterium membrane protein.		CDS	"membrane protein, MmpS family"			lit-s	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820218: hypothetical protein			lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00821186: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2782).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
enoyl-CoA hydratase/isomerase family protein			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		0	0	base_ec	
prolyl oligopeptidase family protein			Serine proteases of the peptidase family S9A	3.4.21.26	CDS	PROBABLE PEPTIDASE( EC:3.4.- )			0	0	0	
EPTC-inducible aldehyde dehydrogenase	1.2.1.3	thcA	NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	Aldehyde dehydrogenase	1.2.1.3		base_ec	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00821442: hypothetical protein			base_one HP	base_one HP	lit-s	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
putative tRANSMEMBRANE PROTEIN			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
dihydrolipoyl dehydrogenase	1.8.1.4	lpdA	dihydrolipoamide dehydrogenase (EC 1.8.1.4)	1.8.1.4	CDS	Dihydrolipoamide dehydrogenase	1.8.1.4		base_tigr	base_ec	base_ec	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
carboxymuconolactone decarboxylase family protein			Uncharacterized conserved protein		CDS	FIG00821074: hypothetical protein			0	0	lit-s	
helix-turn-helix family protein			Predicted transcriptional regulator		CDS	"""Transcriptional regulator, XRE family"""			0	0	0	
thioesterase superfamily protein			Acyl-ACP thioesterase		CDS	Acyl-ACP thioesterase			0	0	base_lit-s	
isocitrate lyase	4.1.3.1	aceA	isocitrate lyase	4.1.3.1	CDS	Isocitrate lyase / Methylisocitrate lyase	4.1.3.1, 4.1.3.30		base_lit-s	base_ec-d	base_ec-d	
3-hydroxybutyryl-CoA dehydrogenase	1.1.1.157	fadB2	3-hydroxyacyl-CoA dehydrogenase	1.1.1.157,1.1.1.35	CDS	3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase	1.1.1.157, 1.1.1.35		base_ec-d	base_ec-d	base_ec-d	
cyclopropane mycolic acid synthase 3	2.1.1.79	pcaA	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	POSSIBLE MYCOLIC ACID SYNTHASE UMAA1			base_ec	0	0	
cyclopropane mycolic acid synthase 3	2.1.1.79	pcaA	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	Mycolic acid synthase (PcaA/UmaA2) (Cyclopropane Synthase)			base_ec	tf_idf	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823681: hypothetical protein			lit-s	base_one HP	base_one HP	
putative prenyltransferase			hypothetical protein		CDS	FIG00820166: hypothetical protein			base_one HP	0	base_one HP	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"""Transcriptional regulator, TetR family"""			gs-sh	gs-sh	pfam-sh	
conserved hypothetical protein			Predicted membrane protein		CDS	Possible membrane protein			base_one HP	base_one HP	lit-s	
helix-turn-helix family protein			Predicted transcriptional regulators		CDS	"""Transcriptional regulator, XRE family"""			0	0	0	
putative iron-regulated heparin binding hemagglutinin HbhA			hypothetical protein		CDS	Iron-regulated heparin binding hemagglutinin HbhA (Adhesin)			base_one HP	0	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2516).		CDS	FIG00820770: hypothetical membrane protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2599).		CDS	POSSIBLE CONSERVED SECRETED PROTEIN			base_one HP	base_one HP	0	
deoxyribose-phosphate aldolase	4.1.2.4	deoC	deoxyribose-phosphate aldolase	4.1.2.4	CDS	Deoxyribose-phosphate aldolase	4.1.2.4		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2993).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
carbon-nitrogen hydrolase family protein			Predicted amidohydrolase		CDS	Carbon-nitrogen hydrolase			0	lit-s	0	
conserved hypothetical protein						Carbon-nitrogen hydrolase			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF2505).		CDS	FIG00996480: hypothetical protein			base_one HP	base_one HP	lit-s	
UDP-N-acetylenolpyruvoylglucosamine reductase	1.1.1.158	murB	UDP-N-acetylmuramate dehydrogenase (EC 1.1.1.158)	1.1.1.158	CDS	UDP-N-acetylenolpyruvoylglucosamine reductase	1.1.1.158		base_tigr	base_lit-s	base_ec	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	Serine 3-dehydrogenase			0	0	0	
L,D-transpeptidase catalytic domain protein			Uncharacterized protein conserved in bacteria		CDS	Possible lipoprotein LprQ			0	0	0	
ROK family protein			Transcriptional regulator/sugar kinase		CDS	Transcriptional regulatory protein			orth	orth	orth	
D-inositol-3-phosphate glycosyltransferase	2.4.1.250	mshA	UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase	2.4.1.250	CDS	Glycosyltransferase MshA involved in mycothiol biosynthesis	2.4.1.-		base_tigr	gs-sh	map	
bacterial sensory transduction regulator family protein			Putative bacterial sensory transduction regulator.		CDS	Uncharacterized protein Rv0487/MT0505 clustered with mycothiol biosynthesis gene			lit-s	0	0	
L-lysine exporter family protein		lysE	L-lysine exporter		CDS	"""Transporter, LysE family"""			base_tigr	0	0	
phosphoglycerate mutase 1 family protein			phosphoglycerate mutase (EC 5.4.2.1)	5.4.2.1	CDS	Phosphoglycerate mutase	5.4.2.1		base_tigr	tf_idf	base_ec	
signal-transduction histidine kinase senX3	2.7.13.3	senX3	Signal transduction histidine kinase	2.7.13.3	CDS	Phosphate regulon sensor protein PhoR (SphS); Sensor-like histidine kinase senX3	2.7.13.3, 2.7.13.3		base_ec	base_ec-d	base_ec-d	
FAD binding domain protein			Choline dehydrogenase and related flavoproteins		CDS	GMC-type oxidoreductase			0	0	0	
sensory transduction protein regX3		regX3	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Phosphate regulon transcriptional regulatory protein PhoB (SphR); Sensory transduction protein regX3			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823091: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00824158: hypothetical protein			lit-s	base_one HP	base_one HP	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"Lactate-responsive regulator LldR in Enterobacteria, GntR family"			gs-sh	gs-sh	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820527: hypothetical protein			lit-s	base_one HP	base_one HP	
ppx/GppA phosphatase family protein			Exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	Exopolyphosphatase	3.6.1.11		gs-sh	gs-sh	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
xylose isomerase-like TIM barrel family protein			Sugar phosphate isomerases/epimerases		CDS	"""AP endonuclease, family protein 2"""			0	0	0	
thioesterase-like superfamily protein			Uncharacterized protein, possibly involved in aromatic compounds catabolism		CDS	TesB-like acyl-CoA thioesterase 3			0	0	0	
pyrroline-5-carboxylate reductase	1.5.1.2	proC	pyrroline-5-carboxylate reductase (EC 1.5.1.2)	1.5.1.2	CDS	Pyrroline-5-carboxylate reductase	1.5.1.2		base_tigr	base_ec	base_ec	
DNA binding , excisionase family domain protein			DNA binding domain, excisionase family		CDS	"""DNA binding domain protein, excisionase family"""			base_tigr	0	0	
NAD dependent epimerase/dehydratase family protein			Nucleoside-diphosphate-sugar epimerases	5.1.3.2	CDS	UDP-glucose 4-epimerase	5.1.3.2		map	orth	base_ec	
acyltransferase family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	Phospholipid/glycerol acyltransferase			0	tf_idf	0	
cyclopropane mycolic acid synthase 2	2.1.1.79	cmaA2	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	"Cyclopropane-fatty-acyl-phospholipid synthase 2, CmaA2"	2.1.1.79		base_ec	base_ec	base_ec	
maoC like domain protein			Acyl dehydratase		CDS	(3R)-hydroxyacyl-ACP dehydratase subunit HadA			gs-sh	0	0	
HAD phosphoserine phosphatase-like hydrolase, IB family protein			HAD-superfamily subfamily IB hydrolase, TIGR01490		CDS	Phosphoserine phosphatase	3.1.3.3		pfam-sh	map	orth	
mycobacterium membrane family protein			Mycobacterium membrane protein.		CDS	"membrane protein, MmpS family"			lit-s	0	0	
transport family protein			Transport protein		CDS	Putative membrane protein			base_tigr	0	0	
conserved hypothetical protein			Glutaredoxin-like domain (DUF836).		CDS	FIG00822170: hypothetical protein			base_one HP	base_one HP	0	
glutamyl-tRNA reductase	1.2.1.70	hemA	glutamyl-tRNA reductase (EC 1.2.1.70)	1.2.1.70	CDS	Glutamyl-tRNA reductase	1.2.1.70		base_tigr	base_ec	base_ec	
porphobilinogen deaminase	2.5.1.61	hemC	hydroxymethylbilane synthase (EC 2.5.1.61)	2.5.1.61	CDS	Porphobilinogen deaminase	2.5.1.61		base_tigr	base_ec	base_ec	
uroporphyrinogen-III synthase HemD family protein			uroporphyrinogen-III synthase/uroporphyrinogen-III C-methyltransferase	2.1.1.107, 4.2.1.75,4.2.1.75, 2.1.1.107	CDS	Uroporphyrinogen-III methyltransferase / Uroporphyrinogen-III synthase	2.1.1.107, 4.2.1.75		gs-sh	0	base_ec-d	
delta-aminolevulinic acid dehydratase family protein			porphobilinogen synthase (EC 4.2.1.24)	4.2.1.24	CDS	Porphobilinogen synthase	4.2.1.24		0	0	base_ec	
putative transmembrane protein			hypothetical protein		CDS	Transmembrane transport protein MmpL2			base_one HP	0	base_one HP	
putative transmembrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
STAS domain protein			Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)		CDS	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV			gs-sh	0	0	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	13E12 repeat family protein			base_one HP	base_one HP	0	
acyltransferase family protein			Predicted acyltransferases		CDS	Membrane acyltransferase			0	lit-s	0	
GDSL-like Lipase/Acylhydrolase family protein			Lysophospholipase L1 and related esterases		CDS	Possible membrane protein			0	0	0	
esterase family protein			Enterochelin esterase and related enzymes		CDS	Possible membrane protein			0	0	0	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Similar to methyltransferase domain of sarcosine-dimethylglycine methyltransferase			0	0	0	
glycine-sarcosine methyltransferase domain protein			hypothetical protein		CDS	POSSIBLE METHYLTRANSFERASE/METHYLASE (FRAGMENT)			base_one HP	0	base_one HP	
deazaflavin-dependent oxidoreductase, nitroreductase family protein			deazaflavin-dependent nitroreductase family protein		CDS	FIG00820204: hypothetical protein			base_tigr	0	0	
amino acid permease family protein			gamma-aminobutyrate:proton symporter, AAT family (TC 2.A.3.1.5)		CDS	Aromatic amino acid transport protein AroP			0	0	0	
glutamate-1-semialdehyde-2,1-aminomutase	5.4.3.8	hemL	glutamate-1-semialdehyde 2,1-aminomutase (EC 5.4.3.8)	5.4.3.8	CDS	Glutamate-1-semialdehyde aminotransferase	5.4.3.8		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Fructose-2,6-bisphosphatase		CDS	"Hypothetical, related to broad specificity phosphatases COG0406"			base_one HP	base_one HP	0	
secreted thiol-disulfide isomerase/thioredoxin			Thiol-disulfide isomerase and thioredoxins		CDS	Thiol:disulfide oxidoreductase related to ResA			0	0	0	
cytochrome C biogenesis transmembrane region family protein			Cytochrome c biogenesis protein		CDS	Cytochrome c-type biogenesis protein CcdA (DsbD analog)			tf_idf	map	gs-sh	
resB-like family protein			ResB protein required for cytochrome c biosynthesis		CDS	Ccs1/ResB-related putative cytochrome C-type biogenesis protein			gs-sh	map	pfam-sh	
cytochrome c-type biogenesis protein CcsB		ccsB	cytochrome c-type biogenesis protein CcsB		CDS	Cytochrome c-type biogenesis protein CcsA/ResC			base_lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822430: hypothetical protein			lit-s	base_one HP	base_one HP	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	RD1 region associated protein Rv3876			gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF4229).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
			3-oxoacyl-[acyl-carrier-protein] synthase III	2.3.1.-,2.3.1.41	CDS				base_one miss	base_both miss	base_one miss	
PE family protein			PE family.		CDS	PE-PGRS family protein			lit-s	0	0	
1,4-dihydroxy-2-naphthoate octaprenyltransferase	2.5.1.74	menA	1,4-dihydroxy-2-naphthoate prenyltransferase	2.5.1.74, 2.5.1.-,2.5.1.74	CDS	"1,4-dihydroxy-2-naphthoate octaprenyltransferase"	2.5.1.74		base_tigr	base_ec	map	
methylthioadenosine phosphorylase	2.4.2.28	mtnP	methylthioadenosine phosphorylase (EC 2.4.2.28)	2.4.2.28	CDS	5'-methylthioadenosine phosphorylase	2.4.2.28		base_tigr	base_ec	base_ec	
polysaccharide biosynthesis family protein			Nucleoside-diphosphate-sugar epimerases	5.1.3.2	CDS	UDP-glucose 4-epimerase	5.1.3.2		0	0	base_ec	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
putative conserved membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	PROBABLE DOLICHYL-PHOSPHATE SUGAR SYNTHASE (DOLICHOL-PHOSPHATE SUGAR SYNTHETASE) (DOLICHOL-PHOSPHATE SUGAR TRANSFERASE) (SUGAR PHOSPHORYLDOLICHOL SYNTHASE)( EC:2.4.1.- )			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00821404: hypothetical protein			base_one HP	base_one HP	lit-s	
putative membrane protein			hypothetical protein		CDS	Putative ESX-1 secretion system component Rv3877			base_one HP	0	base_one HP	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.26	CDS	O-succinylbenzoic acid--CoA ligase	6.2.1.26		pfam-sh	map	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3349).		CDS	FIG00995255: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
phosphate transporter family protein			Phosphate/sulphate permeases		CDS	Probable low-affinity inorganic phosphate transporter			0	tf_idf	0	
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			Predicted enzyme related to lactoylglutathione lyase		CDS	FIG020377: hypothetical protein			0	0	0	
fatty acyl-CoA reductase	1.2.1.n2	acr1	Short-chain dehydrogenases of various substrate specificities		CDS	"""Oxidoreductase, short-chain dehydrogenase/reductase family"""			gs-sh	0	0	
naphthoate synthase	4.1.3.36	menB	1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36)	4.1.3.36	CDS	Naphthoate synthase	4.1.3.36		base_tigr	base_ec	base_ec	
putative ribonuclease VapC3			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Toxin 1, PIN domain"			0	0	pfam-sh	
antitoxin VapB3		vapB3	Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid		CDS	Antitoxin 1a			0	0	0	
putative predicted protein						FIG00821203: hypothetical protein			base_one miss	lit-s	base_one miss	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
amidohydrolase family protein			Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	Amidohydrolase family protein			0	lit-s	0	
mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein			L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily	4.2.1.113	CDS	O-succinylbenzoate synthase	4.2.1.113		0	0	base_ec	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	1.11.1.-	CDS	"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase"	4.2.99.20		0	0	0	
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	2.2.1.9	menD	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase (EC 2.2.1.9)	2.2.1.9	CDS	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase	2.2.1.9		base_tigr	base_lit-s	base_ec	
putative cONSERVED TRANSMEMBRANE PROTEIN			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
GDP-mannose-dependent alpha-mannosyltransferase	2.4.1.-	mgtA	Glycosyltransferase	2.4.1.-	CDS	Glycosyltransferase			gs-sh	gs-sh	base_lit-s	
ubiquinone/menaquinone biosynthesis methyltransferase family protein	2.1.1.-		2-octaprenyl-6-methoxy-1,4-benzoquinone methylase/demethylmenaquinone methyltransferase	2.1.1.163, 2.1.1.201,2.1.1.-, 2.1.1.163	CDS	ubiquinone/menaquinone biosynthesis methyltransferase			base_tigr	lit-s	map	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	POSSIBLE CONSERVED SECRETED PROTEIN			base_one HP	base_one HP	0	
methyltransferase domain protein			Methyltransferase domain.		CDS	Possible benzoquinone methyltransferase			lit-s	tf_idf	tf_idf	
geranylgeranyl reductase family protein	1.3.1.-		geranylgeranyl reductase family		CDS	Possible oxidoreductase	1.-.-.-		base_tigr	0	0	
geranylgeranyl pyrophosphate synthase	2.5.1.-	ispB	Geranylgeranyl pyrophosphate synthase	2.5.1.30	CDS	"Octaprenyl diphosphate synthase / Dimethylallyltransferase / (2E,6E)-farnesyl diphosphate synthase / Geranylgeranyl diphosphate synthase"	2.5.1.90, 2.5.1.1, 2.5.1.10, 2.5.1.29		lit-s	0	base_ec-d	
peptidase M48 family protein			Heat shock protein. Metallo peptidase. MEROPS family M48B	3.4.24.-	CDS	Probable protease htpX homolog	3.4.24.-		map	gs-sh	gs-sh	
NAD-dependent glycerol-3-phosphate dehydrogenase family protein			Glycerol-3-phosphate dehydrogenase	1.1.1.94	CDS	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	1.1.1.94		0	0	base_ec	
FAD-containing monooxygenase EthA	1.14.13.-	ethA	Predicted flavoprotein involved in K+ transport		CDS	Cyclohexanone monooxygenase	1.14.13.22		gs-sh	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG001943: hypothetical protein YajQ			base_one HP	base_one HP	0	
O-methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	O-methyltransferase			0	lit-s	0	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 135B1			lit-s	tf_idf	tf_idf	
conserved hypothetical protein			Domain of unknown function (DUF1918).		CDS	FIG00820469: hypothetical protein			base_one HP	base_one HP	lit-s	
ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		ribonucleoside-diphosphate reductase class II	1.17.4.1,1.17.4.-	CDS	Ribonucleotide reductase of class II (coenzyme B12-dependent)	1.17.4.1		0	base_ec	0	
dienelactone hydrolase domain protein			Predicted phosphoribosyltransferases		CDS	Phosphoribosyl transferase domain protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822603: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820669: hypothetical protein			lit-s	base_one HP	base_one HP	
nicotinate phosphoribosyltransferase family protein			putative nicotinate phosphoribosyltransferase	2.4.2.11	CDS	Nicotinate phosphoribosyltransferase	2.4.2.11		lit-s	lit-s	base_ec	
bacterial capsule synthesis PGA_cap family protein			Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation)		CDS	Capsule biosynthesis protein CapA			0	0	0	
FAD binding domain protein			2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases		CDS	Oxidoreductase			0	0	0	
conserved hypothetical protein			transcriptional regulator, ArsR family		CDS	"Transcriptional regulator, ArsR family"			base_one HP	base_one HP	lit-s	
27 kDa antigen Cfp30B		cfp30B	Predicted enzyme related to lactoylglutathione lyase		CDS	27 kDa antigen Cfp30B			gs-sh	base_lit-s	map	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
ub domain fused to Mut7-C family protein			Uncharacterized conserved protein		CDS	FIG00825218: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG030357: hypothetical protein			lit-s	base_one HP	base_one HP	
antitoxin VapB26		vapB26	Ribbon-helix-helix protein, copG family.		CDS	FIG00820371: hypothetical protein			0	0	0	
putative ribonuclease VapC26			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821513: hypothetical protein			0	0	0	
putative lipoLpqN family protein			Probable lipoprotein LpqN.		CDS	Lipoprotein LpqN			0	0	lit-s	
hypothetical protein									base_one HP	base_one HP	base_both miss	
alpha-1,2-mannosidase family protein			alpha-1,2-mannosidase, putative		CDS	"Alpha-1,2-mannosidase"			base_tigr	lit-s	lit-s	
TIGR00374 family protein			Predicted integral membrane protein		CDS	Possible membrane protein			base_tigr	0	0	
iron dependent repressor, N-terminal DNA binding domain protein			transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family"			0	0	lit-s	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1A			0	0	0	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1B			0	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1A			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1B			gs-sh	0	0	
MCE-family Mce1B domain protein		mce1B	hypothetical protein		CDS	MCE-family protein Mce1B			base_one HP	lit-s	base_one HP	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1C			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1D			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1F			gs-sh	0	0	
putative ribonuclease VapC4			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00822047: hypothetical protein			0	0	0	
antitoxin VapB4		vapB4	prevent-host-death family protein		CDS	FIG044579: hypothetical protein			0	0	0	
conserved hypothetical protein			Predicted ATPase (AAA+ superfamily)		CDS	ATPase			base_one HP	base_one HP	0	
putative ribonuclease VapC27			PIN domain.		CDS	"Toxin 1, PIN domain"			0	0	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822992: hypothetical protein			lit-s	base_one HP	base_one HP	
antitoxin VapB27		vapB27	looped-hinge helix DNA binding domain, AbrB family		CDS	FIG00820380: hypothetical protein			0	0	0	
sensor histidine kinase component HK1	2.7.13.3		Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.		CDS	PROBABLE TWO COMPONENT SENSOR KINASE [SECOND PART]			0	0	0	
sensor histidine kinase component HK2	2.7.13.3		His Kinase A (phospho-acceptor) domain./HAMP domain.	2.7.13.3	CDS	Integral membrane sensor signal transduction histidine kinase			base_ec	0	0	
transcriptional regulatory protein tcrA		tcrA	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Two component DNA binding Transcriptional regulatory protein TcrA			gs-sh	0	0	
peptidase propeptide and YPEB domain protein			hypothetical protein		CDS	POSSIBLE EXPORTED PROTEIN			base_one HP	0	base_one HP	
conserved hypothetical protein			Domain of Unknown Function (DUF1259).		CDS	PROBABLE CONSERVED LIPOPROTEIN LPQO			base_one HP	base_one HP	0	
resolvase, N terminal domain protein			Predicted site-specific integrase-resolvase		CDS	Resolvase			0	0	0	
putative transposase family protein			Transposase and inactivated derivatives		CDS	Transposase			0	lit-s	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822227: hypothetical protein			lit-s	base_one HP	base_one HP	
antitoxin VapB28		vapB28	Uncharacterized protein conserved in bacteria		CDS	FIG036639: hypothetical protein			0	0	lit-s	
putative ribonuclease VapC28			Uncharacterized protein conserved in bacteria		CDS	FIG00821655: hypothetical protein			0	0	lit-s	
conserved hypothetical protein						FIG00821340: hypothetical protein			base_one HP	base_one HP	base_one miss	
hypothetical protein			hypothetical protein		CDS	FIG00822720: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821968: hypothetical protein			lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	hypothetical protein			base_lit-s	base_lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820918: hypothetical protein			lit-s	base_one HP	base_one HP	
SEC-C motif family protein			SEC-C motif.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
putative antitoxin VapB29			hypothetical protein		CDS	FIG00820212: hypothetical protein			base_one HP	0	base_one HP	
mycobacterium tuberculosis PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG037359: hypothetical protein			base_tigr	0	0	
galactose-1-phosphate uridyl transferase, N-terminal domain protein			Galactose-1-phosphate uridylyltransferase	2.7.7.12	CDS	Galactose-1-phosphate uridylyltransferase	2.7.7.10		0	0	base_lit-s	
galactose-1-phosphate uridyl transferase, C-terminal domain protein			Galactose-1-phosphate uridylyltransferase	2.7.7.12	CDS	Galactose-1-phosphate uridylyltransferase	2.7.7.10		0	0	base_lit-s	
galactokinase	2.7.1.6	galK	galactokinase (EC 2.7.1.6)	2.7.1.6	CDS	Galactokinase	2.7.1.6		base_tigr	base_ec	base_ec	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
antitoxin VapB30		vapB30	Uncharacterized protein conserved in bacteria		CDS	FIG00821357: hypothetical protein			0	0	lit-s	
putative ribonuclease VapC30			Uncharacterized protein conserved in bacteria		CDS	FIG00825799: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Possible membrane protein			base_one HP	base_one HP	0	
putative antitoxin VapB5			prevent-host-death family protein		CDS	FIG00822638: hypothetical protein			0	0	0	
ribonuclease VapC5	3.1.-.-	vapC5	Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821685: hypothetical protein			0	0	0	
FIST N domain protein			Uncharacterized protein conserved in bacteria		CDS	FIG00822946: hypothetical protein			0	0	lit-s	
exodeoxyribonuclease V, alpha subunit	3.1.11.5	recD	DNA helicase/exodeoxyribonuclease V, alpha subunit (EC 3.1.11.5)	3.1.11.5	CDS	Exodeoxyribonuclease V alpha chain	3.1.11.5		base_tigr	base_ec	base_ec	
exodeoxyribonuclease V, beta subunit	3.1.11.5	recB	DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5)	3.1.11.5	CDS	Exodeoxyribonuclease V beta chain	3.1.11.5		base_tigr	base_ec	base_ec	
exodeoxyribonuclease V, gamma subunit	3.1.11.5	recC	DNA helicase/exodeoxyribonuclease V, gamma subunit (EC 3.1.11.5)	3.1.11.5	CDS	Exodeoxyribonuclease V gamma chain	3.1.11.5		base_tigr	base_ec	base_ec	
enoyl-CoA hydratase, EchA3		echA3	Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase			gs-sh	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
metallo-beta-lactamase superfamily protein			Zn-dependent hydrolases, including glyoxylases	3.1.2.6	CDS	FIG00822416: hypothetical protein			0	0	0	
conserved hypothetical protein			Transcription regulator of the Arc/MetJ class		CDS	FIG00822280: hypothetical protein			base_one HP	base_one HP	0	
ribosomal protein L33		rpmG	LSU ribosomal protein L33P		CDS	"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-dependent"			base_tigr	0	0	
metal-binding domain of MaoC dehydratase family protein			Acyl dehydratase		CDS	FIG00995223: hypothetical protein			gs-sh	0	0	
maoC like domain protein			Acyl dehydratase		CDS	(3R)-hydroxyacyl-ACP dehydratase subunit HadB			gs-sh	0	0	
metal-binding domain of MaoC dehydratase family protein			Acyl dehydratase		CDS	FIG00820537: hypothetical protein			gs-sh	0	0	
preprotein translocase, SecE subunit		secE	protein translocase subunit secE/sec61 gamma		CDS	Preprotein translocase subunit SecE (TC 3.A.5.1.1)			base_tigr	lit-s	gs-sh	
transcription termination/antitermination factor NusG		nusG	transcription antitermination protein nusG		CDS	Transcription antitermination protein NusG			base_tigr	pfam-sh	lit-s	
ribosomal protein L11		rplK	LSU ribosomal protein L11P		CDS	LSU ribosomal protein L11p (L12e)			base_tigr	0	0	
ribosomal protein L1		rplA	LSU ribosomal protein L1P		CDS	LSU ribosomal protein L1p (L10Ae)			base_tigr	0	0	
hydroxymycolate synthase MmaA4	2.1.1.-	mmaA4	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	Cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79		gs-sh	map	base_ec	
cyclopropane mycolic acid synthase MmaA2	2.1.1.79	mmaA2	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	Cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79		base_ec	base_ec	base_ec	
cyclopropane mycolic acid synthase MmaA2	2.1.1.79	mmaA2	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	Cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79		base_ec	base_ec	base_ec	
cyclopropane mycolic acid synthase 1	2.1.1.79	cmaA1	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	Methoxy mycolic acid synthase 1 MmaA1	2.1.1.-		base_ec	tf_idf	map	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Carboxyl esterase			0	0	0	
phosphotransferase enzyme family protein			Predicted unusual protein kinase		CDS	Ubiquinone biosynthesis monooxygenase UbiB			0	0	gs-sh	
NPCBM-associated, NEW3 domain of alpha-galactosidase family protein			Alpha-mannosidase		CDS	Alpha-mannosidase	3.2.1.24		0	0	base_lit-s	
putative malonyl CoA-acyl carrier protein transacylase, FabD2			hypothetical protein	2.3.1.39	CDS	POSSIBLE MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE FABD2 (MCT)	2.3.1.39		base_one HP	tf_idf	base_one HP	
ROK family protein			glucokinase (EC 2.7.1.2)	2.7.1.2	CDS	Sugar kinase			0	orth	0	
50S ribosomal protein L10		rplJ	LSU ribosomal protein L10P		CDS	LSU ribosomal protein L10p (P0)			gs-sh	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
ribosomal protein L7/L12		rplL	LSU ribosomal protein L12P		CDS	LSU ribosomal protein L7/L12 (P1/P2)			base_tigr	0	0	
retinal pigment epithelial membrane family protein			Lignostilbene-alpha,beta-dioxygenase and related enzymes		CDS	"""Lignostilbene-alpha,beta-dioxygenase and related enzymes"""			0	0	0	
ABC transporter family protein			ABC-type transport system involved in resistance to organic solvents, ATPase component		CDS	Methionine ABC transporter ATP-binding protein			0	tf_idf	0	
PIN domain protein			PIN domain.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
putative ribonuclease VapC6						FIG00820147: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria (DUF2191).		CDS	FIG00821248: hypothetical protein			base_one HP	base_one HP	lit-s	
CAAX protease self-immunity family protein			Predicted metal-dependent membrane protease		CDS	Possible membrane protein			0	0	0	
pemK-like family protein			Growth inhibitor	3.1.-	CDS	"Death on curing protein, Doc toxin"			gs-sh	0	0	
putative antitoxin MazE2			hypothetical protein		CDS	"Prevent host death protein, Phd antitoxin"			base_one HP	0	base_one HP	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00822666: hypothetical protein			pfam-sh	0	0	
			hypothetical protein		CDS	"""DNA-binding protein, CopG family"""			base_one HP	base_one miss	base_one HP	
sulfatase family protein			Arylsulfatase A and related enzymes	3.1.6.1	CDS	Arylsulfatase	3.1.6.1		0	0	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821129: hypothetical protein			pfam-sh	0	0	
hypothetical protein			hypothetical protein		CDS	hypothetical protein			base_lit-s	base_lit-s	base_lit-s	
DNA-directed RNA polymerase, beta subunit	2.7.7.6	rpoB	DNA-directed RNA polymerase subunit beta (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase beta subunit	2.7.7.6		base_tigr	base_ec	base_ec	
DNA-directed RNA polymerase, beta' subunit	2.7.7.6	rpoC	DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase beta' subunit	2.7.7.6		base_tigr	base_ec	base_ec	
neutral ceramidase	3.5.1.23		Neutral/alkaline non-lysosomal ceramidase.		CDS	Alkaline ceramidase			0	0	0	
xylose isomerase-like TIM barrel family protein			Endonuclease IV	3.1.21.2,3.1.21.-	CDS	Endonuclease IV	3.1.21.2		0	0	base_lit-s	
esterase PHB depolymerase family protein			Poly(3-hydroxybutyrate) depolymerase		CDS	Lipoprotein LpqP			0	0	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Acyl-CoA dehydrogenase	1.3.99.3		0	lit-s	0	
enoyl-CoA hydratase			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase			0	lit-s	0	
paaX-like family protein			transcriptional regulator, PaaX family		CDS	Phenylacetic acid degradation operon negative regulatory protein PaaX			gs-sh	map	pfam-sh	
enoyl-CoA hydratase, EchA5		echA5	Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		gs-sh	gs-sh	base_ec	
transport family protein			Transport protein		CDS	Transmembrane transport protein MmpL5			base_tigr	tf_idf	orth	
mycobacterium membrane family protein			Mycobacterium membrane protein.		CDS	"membrane protein, MmpS family"			lit-s	0	0	
putative regulatory protein MarR			hypothetical protein		CDS	FIG00822074: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3060).		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF3060).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
hypothetical protein						FIG00820507: hypothetical protein			base_one HP	base_one HP	base_one miss	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
ribosomal protein S12		rpsL	SSU ribosomal protein S12P		CDS	SSU ribosomal protein S12p (S23e)			base_tigr	0	0	
ribosomal protein S7		rpsG	SSU ribosomal protein S7P		CDS	SSU ribosomal protein S7p (S5e)			base_tigr	0	0	
translation elongation factor G		fusA	translation elongation factor 2 (EF-2/EF-G)		CDS	Translation elongation factor G			gs-sh	lit-s	map	
translation elongation factor Tu		tuf	translation elongation factor 1A (EF-1A/EF-Tu)		CDS	Translation elongation factor Tu			gs-sh	lit-s	map	
short C-terminal domain protein			Short C-terminal domain.		CDS	FIG025093: Probable membrane protein			lit-s	0	0	
putative short-chain type dehydrogenase/reductase MSMEG_6031			oxidoreductase, SDR family		CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		0	0	0	
glyoxalase/bleomycin resistance /dioxygenase domain protein						FIG00822343: hypothetical protein			base_one miss	0	base_one miss	
pyridine nucleotide-disulfide oxidoreductase family protein			NAD(P)H-nitrite reductase		CDS	Ferredoxin reductase			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00821437: hypothetical protein			base_one HP	base_one HP	lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	Mycofactocin system transcriptional regulator			gs-sh	0	0	
mycofactocin		mftA	mycofactocin precursor		CDS	Mycofactocin precursor			base_tigr	map	lit-s	
conserved hypothetical protein			mycofactocin system RPExFGAL protein		CDS	Mycofactocin system small protein			base_one HP	base_one HP	0	
mycofactocin radical SAM maturase		mftC	mycofactocin radical SAM maturase		CDS	Mycofactocin radical SAM maturase			base_lit-s	lit-s	lit-s	
FMN-dependent dehydrogenase family protein			heme/flavin dehydrogenase, mycofactocin system	1.1.2.3	CDS	Mycofactocin system heme/flavin dehydrogenase			0	0	lit-s	
creatinine amidohydrolase family protein			creatinine amidohydrolase family protein, mycofactocin system		CDS	Cyclic amid hydrolase in mycofactocin cluster			0	0	0	
glycosyl transferase 2 family protein			mycofactocin system glycosyltransferase		CDS	Mycofactocin system glycosyltransferase			0	0	lit-s	
GMC oxidoreductase family protein			dehydrogenase, Rv0697 family		CDS	Dehydrogenase in mycofactocin cluster			0	0	0	
conserved hypothetical protein						FIG055611: hypothetical protein			base_one HP	base_one HP	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein						FIG00820963: hypothetical protein			base_one HP	base_one HP	base_one miss	
ribosomal protein S10		rpsJ	SSU ribosomal protein S10P		CDS	SSU ribosomal protein S10p (S20e)			base_tigr	0	0	
50S ribosomal protein L3		rplC	LSU ribosomal protein L3P		CDS	LSU ribosomal protein L3p (L3e)			base_tigr	0	0	
50S ribosomal protein L4		rplD	LSU ribosomal protein L4P		CDS	LSU ribosomal protein L4p (L1e)			base_tigr	0	0	
50S ribosomal protein L23		rplW	LSU ribosomal protein L23P		CDS	LSU ribosomal protein L23p (L23Ae)			gs-sh	0	0	
ribosomal protein L2		rplB	LSU ribosomal protein L2P		CDS	LSU ribosomal protein L2p (L8e)			base_tigr	0	0	
ribosomal protein S19		rpsS	SSU ribosomal protein S19P		CDS	SSU ribosomal protein S19p (S15e)			base_tigr	0	0	
ribosomal protein L22		rplV	LSU ribosomal protein L22P		CDS	LSU ribosomal protein L22p (L17e)			base_tigr	0	0	
ribosomal protein S3		rpsC	SSU ribosomal protein S3P		CDS	SSU ribosomal protein S3p (S3e)			base_tigr	0	0	
ribosomal protein L16		rplP	LSU ribosomal protein L16P		CDS	LSU ribosomal protein L16p (L10e)			base_tigr	0	0	
ribosomal protein L29		rpmC	LSU ribosomal protein L29P		CDS	LSU ribosomal protein L29p (L35e)			base_tigr	0	0	
30S ribosomal protein S17		rpsQ	SSU ribosomal protein S17P		CDS	SSU ribosomal protein S17p (S11e)			base_tigr	0	0	
sulfatase family protein			Arylsulfatase A and related enzymes	3.1.6.1	CDS	Arylsulfatase	3.1.6.1		0	0	base_ec	
formylglycine-generating sulfatase enzyme family protein			Uncharacterized conserved protein		CDS	Sulfatase modifying factor 1 precursor (C-alpha-formyglycine- generating enzyme 1)			0	0	0	
putative conserved transmembrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
ribosomal protein L14		rplN	LSU ribosomal protein L14P		CDS	LSU ribosomal protein L14p (L23e)			base_tigr	0	0	
ribosomal protein L24		rplX	LSU ribosomal protein L24P		CDS	LSU ribosomal protein L24p (L26e)			base_tigr	0	0	
50S ribosomal protein L5		rplE	LSU ribosomal protein L5P		CDS	LSU ribosomal protein L5p (L11e)			gs-sh	0	0	
30S ribosomal protein S14 type Z		rpsZ	SSU ribosomal protein S14P		CDS	"SSU ribosomal protein S14p (S29e) @ SSU ribosomal protein S14p (S29e), zinc-dependent"			gs-sh	0	0	
30S ribosomal protein S8		rpsH	SSU ribosomal protein S8P		CDS	SSU ribosomal protein S8p (S15Ae)			gs-sh	0	0	
ribosomal protein L6		rplF	LSU ribosomal protein L6P		CDS	LSU ribosomal protein L6p (L9e)			base_tigr	0	0	
ribosomal protein L18		rplR	LSU ribosomal protein L18P		CDS	LSU ribosomal protein L18p (L5e)			base_tigr	0	0	
ribosomal protein S5		rpsE	SSU ribosomal protein S5P		CDS	SSU ribosomal protein S5p (S2e)			base_tigr	0	0	
ribosomal protein L30		rpmD	LSU ribosomal protein L30P		CDS	LSU ribosomal protein L30p (L7e)			base_tigr	0	0	
ribosomal protein L15		rplO	LSU ribosomal protein L15P		CDS	LSU ribosomal protein L15p (L27Ae)			base_tigr	0	0	
signal peptide peptidase SppA, 67K type	3.4.-.-	sppA	signal peptide peptidase SppA, 67K type	3.4.21.-	CDS	Possible protease IV SppA (endopeptidase IV) (signal peptide peptidase)			base_lit-s	gs-sh	gs-sh	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	FIG00819993: hypothetical protein			base_tigr	0	0	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	FIG00824343: hypothetical protein			base_tigr	0	0	
class II Aldolase and Adducin N-terminal domain protein			Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases	4.1.2.17	CDS	L-fuculose phosphate aldolase	4.1.2.17		0	0	base_ec	
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein			Phosphoglycerate dehydrogenase and related dehydrogenases	1.1.1.95	CDS	D-3-phosphoglycerate dehydrogenase	1.1.1.95		0	0	base_ec	
carbohydrate kinase, FGGY family			Sugar (pentulose and hexulose) kinases	2.7.1.17	CDS	Putative xylulose kinase	2.7.1.17		gs-sh	map	base_ec	
acetyltransferase domain protein			Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit		CDS	FIG00820922: hypothetical protein			0	0	0	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	FIG00819993: hypothetical protein			base_tigr	0	0	
preprotein translocase, SecY subunit		secY	protein translocase subunit secY/sec61 alpha		CDS	Preprotein translocase secY subunit (TC 3.A.5.1.1)			base_tigr	lit-s	gs-sh	
adenylate kinase	2.7.4.3	adk	Adenylate kinase (EC 2.7.4.3)	2.7.4.3	CDS	Adenylate kinase	2.7.4.3		base_ec	base_ec	base_ec	
methionine aminopeptidase, type I	3.4.11.18	map	methionine aminopeptidase, type I (EC 3.4.11.18)	3.4.11.18	CDS	Methionine aminopeptidase	3.4.11.18		base_tigr	base_ec	base_ec	
RNA polymerase sigma factor, sigma-70 family protein			RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma-70 factor			base_tigr	tf_idf	tf_idf	
zinc-finger family protein			Predicted transmembrane transcriptional regulator (anti-sigma factor)		CDS	Possible membrane protein			0	0	0	
thiamine pyrophosphate enzyme, N-terminal TPP binding domain protein						COG0028: Thiamine pyrophosphate-requiring enzymes			base_one miss	0	base_one miss	
marR family protein			Transcriptional regulators		CDS	"Transcriptional regulator, MarR family"			gs-sh	gs-sh	gs-sh	
hypothetical protein						FIG00828360: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			TIGR03086 family protein		CDS	FIG00822571: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF4226).		CDS	FIG00822485: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821514: hypothetical protein			lit-s	base_one HP	base_one HP	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821670: hypothetical protein			lit-s	base_one HP	base_one HP	
DNA binding , excisionase family domain protein			DNA binding domain, excisionase family		CDS	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN			base_tigr	0	0	
PE family protein			Membrane protein involved in colicin uptake		CDS	PE-PGRS virulence associated protein			0	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
antitoxin VapB31		vapB31	Ribbon-helix-helix protein, copG family.		CDS	FIG00820737: hypothetical protein			0	0	0	
putative ribonuclease VapC31			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00820914: hypothetical protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823268: hypothetical protein			lit-s	base_one HP	base_one HP	
3-hydroxyisobutyrate dehydrogenase	1.1.1.31	mmsB	3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31)	1.1.1.31	CDS	3-hydroxyisobutyrate dehydrogenase	1.1.1.31		base_tigr	base_lit-s	base_ec	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	PROBABLE ACYL-COA DEHYDROGENASE FADE9( EC:1.3.99.- )			0	0	0	
methylmalonate-semialdehyde dehydrogenase	1.2.1.27	mmsA	methylmalonic acid semialdehyde dehydrogenase	1.2.1.18, 1.2.1.27	CDS	Methylmalonate-semialdehyde dehydrogenase	1.2.1.27		base_tigr	base_ec	base_ec-d	
histidine phosphatase super family protein			Fructose-2,6-bisphosphatase		CDS	PE-PGRS FAMILY PROTEIN			0	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
transposase family protein			Helix-turn-helix domain.		CDS	PUTATIVE TRANSPOSASE (FRAGMENT)			0	tf_idf	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820010: hypothetical protein			lit-s	base_one HP	base_one HP	
response regulator			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	DNA-binding response regulator			0	0	0	
HIT domain protein			Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	HIT family protein			pfam-sh	lit-s	pfam-sh	
HAMP domain protein			Signal transduction histidine kinase	2.7.13.3	CDS	PhoR			gs-sh	0	0	
snoaL-like domain protein			Nuclear transport factor 2 (NTF2) domain.	5.3.3.1	CDS	"steroid isomerase, putative"			0	0	0	
NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family protein	1.1.99.36		oxidoreductase, Rxyl_3153 family	1.1.1.284, 1.1.1.1	CDS	Alcohol dehydrogenase	1.1.1.1		base_tigr	base_ec-d	base_ec-d	
conserved hypothetical protein			hypothetical protein		CDS	FIG00994119: hypothetical protein			lit-s	base_one HP	base_one HP	
4Fe-4S single cluster domain protein			Ferredoxin		CDS	Ferredoxin			0	0	base_lit-s	
lanosterol 14-alpha demethylase	1.14.13.70	cyp51	Cytochrome P450	1.14.13.70	CDS	Cytochrome P450 51			base_ec	gs-sh	orth	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	"oxidoreductase, short-chain dehydrogenase/reductase family"			0	0	0	
cytochrome P450 family protein			Cytochrome P450		CDS	putative cytochrome P450 hydroxylase			lit-s	tf_idf	tf_idf	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
aldehyde dehydrogenase family protein			NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	Aldehyde dehydrogenase	1.2.1.3		map	lit-s	base_ec	
conserved hypothetical protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		base_one HP	base_one HP	0	
putative oxidoreductase			3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases		CDS	PROBABLE DEHYDROGENASE/REDUCTASE( EC:1.1.1.- )			0	0	0	
carboxymuconolactone decarboxylase family protein			Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit	4.1.1.44	CDS	4-carboxymuconolactone decarboxylase	4.1.1.44		map	tf_idf	base_ec	
gamma-glutamyltransferase	2.3.2.2	ggt	gamma-glutamyltransferase 2. Threonine peptidase. MEROPS family T03	2.3.2.2	CDS	Gamma-glutamyltranspeptidase	2.3.2.2		base_tigr	base_ec	base_ec	
phosphoribosylamine--glycine ligase	6.3.4.13	purD	phosphoribosylamine--glycine ligase (EC 6.3.4.13)	6.3.4.13	CDS	Phosphoribosylamine--glycine ligase	6.3.4.13		base_tigr	base_ec	base_ec	
esterase family protein			Predicted esterase		CDS	Gamma-glutamyltranspeptidase	2.3.2.2		lit-s	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820278: hypothetical protein			base_one HP	base_one HP	lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
adenylosuccinate lyase	4.3.2.2	purB	adenylosuccinate lyase	4.3.2.2	CDS	Adenylosuccinate lyase	4.3.2.2		base_lit-s	base_ec	base_ec	
putative transmembrane protein			hypothetical protein		CDS	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	lit-s	base_one HP	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 126A3			lit-s	tf_idf	tf_idf	
phosphoribosylaminoimidazolesuccinocarboxamide synthase	6.3.2.6	purC	phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6)	6.3.2.6	CDS	Phosphoribosylaminoimidazole-succinocarboxamide synthase	6.3.2.6		base_tigr	base_ec	base_ec	
prolyl oligopeptidase, N-terminal beta-propeller domain protein			Protease II	3.4.21.83	CDS	Protease II	3.4.21.83		0	0	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821840: hypothetical protein			lit-s	base_one HP	base_one HP	
prolyl oligopeptidase family protein			Protease II		CDS	Protease II	3.4.21.83		0	0	base_lit-s	
H+ antiporter-2 family protein			drug resistance transporter, EmrB/QacA subfamily		CDS	Inner membrane component of tripartite multidrug resistance system			base_tigr	0	0	
conserved hypothetical protein			Predicted deacetylase		CDS	FIG00998196: hypothetical protein			base_one HP	base_one HP	0	
ksdD-like steroid dehydrogenase MSMEG_5835	1.3.99.-		Predicted oxidoreductase		CDS	Fumarate/succinate/L-aspartate dehydrogenases			gs-sh	0	0	
beta-lactamase superfamily domain protein			Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	FIG00998332: hypothetical protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820729: hypothetical protein			lit-s	base_one HP	base_one HP	
phosphoribosylformylglycinamidine synthase, purS protein		purS	phosphoribosylformylglycinamidine synthase, purS protein	6.3.5.3	CDS	"Phosphoribosylformylglycinamidine synthase, PurS subunit"	6.3.5.3		base_lit-s	lit-s	base_ec	
phosphoribosylformylglycinamidine synthase I	6.3.5.3	purQ	phosphoribosylformylglycinamidine synthase subunit I (EC 6.3.5.3)	6.3.5.3	CDS	"Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit"	6.3.5.3		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820357: hypothetical protein			lit-s	base_one HP	base_one HP	
transglutaminase-like superfamily protein			Transglutaminase-like enzymes, putative cysteine proteases		CDS	"Transglutaminase-like enzymes, putative cysteine proteases"			0	0	lit-s	
putative F420-dependent oxidoreductase, Rv2161c family domain protein			probable F420-dependent oxidoreductase, Rv2161c family		CDS	"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"			base_tigr	0	0	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase"			gs-sh	0	0	
antibiotic biosynthesis monooxygenase family protein			Uncharacterized conserved protein		CDS	FIG00823434: hypothetical protein			0	0	lit-s	
pyridine nucleotide-disulfide oxidoreductase family protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.8.1.4	CDS	"PF00070 family, FAD-dependent NAD(P)-disulphide oxidoreductase"			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
linocin-M18	3.4.-.-	lin	Uncharacterized protein, linocin/CFP29 homolog		CDS	Encapsulating protein for a DyP-type peroxidase or ferritin-like protein oligomers			gs-sh	0	0	
transposase IS116/IS110/IS902 family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			Dyp-type peroxidase family		CDS	"Predicted dye-decolorizing peroxidase (DyP), encapsulated subgroup"			base_one HP	base_one HP	0	
aminopeptidase I zinc metalloprotease family protein			Aspartyl aminopeptidase	3.4.11.-	CDS	Aspartyl aminopeptidase			0	0	base_lit-s	
acetyltransferase domain protein			Acetyltransferases, including N-acetylases of ribosomal proteins		CDS	FIG00821487: hypothetical protein			0	0	0	
glyoxalase-like domain protein			Predicted enzyme related to lactoylglutathione lyase		CDS	glyoxalase family protein superfamily			0	0	0	
phosphoribosylformylglycinamidine synthase II	6.3.5.3	purL	phosphoribosylformylglycinamidine synthase subunit II (EC 6.3.5.3)	6.3.5.3	CDS	"Phosphoribosylformylglycinamidine synthase, synthetase subunit"	6.3.5.3		base_tigr	base_ec	base_ec	
CAAX protease self-immunity family protein			CAAX protease self-immunity.		CDS	"3',5'-cyclic-nucleotide phosphodiesterase"	3.1.4.17		lit-s	0	0	
conserved hypothetical protein			hypothetical protein	5.1.3.2	CDS	probable UDP-glucose-4-epimerase			lit-s	base_one HP	base_one HP	
			Predicted phosphohydrolases		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
amidophosphoribosyltransferase	2.4.2.14	purF	amidophosphoribosyltransferase (EC 2.4.2.14)	2.4.2.14	CDS	Amidophosphoribosyltransferase	2.4.2.14		base_tigr	base_ec	base_ec	
phosphoribosylformylglycinamidine cyclo-ligase	6.3.3.1	purM	phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)	6.3.3.1	CDS	Phosphoribosylformylglycinamidine cyclo-ligase	6.3.3.1		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3073).		CDS	FIG00821405: hypothetical protein			base_one HP	base_one HP	lit-s	
glycine cleavage T-C-terminal barrel domain protein			folate-binding protein YgfZ		CDS	Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress			0	0	0	
aminotransferase class IV family protein			Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	4.1.3.38	CDS	Aminodeoxychorismate lyase	4.1.3.38		0	0	base_ec	
conserved hypothetical protein			Domain of unknown function (DUF1794).		CDS	DUF1794			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1416).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
putative thiosulfate sulfurtransferase			thiosulfate sulfurtransferase	2.8.1.2, 2.8.1.1,2.8.1.1	CDS	"Thiosulfate sulfurtransferase, rhodanese"	2.8.1.1		lit-s	tf_idf	base_ec-d	
thioredoxin family protein			Thiol-disulfide isomerase and thioredoxins		CDS	Thioredoxin			0	lit-s	0	
conserved hypothetical protein			Protein of unknown function (DUF2993).		CDS	FIG00821015: hypothetical protein			base_one HP	base_one HP	lit-s	
transcriptional regulatory , C terminal family protein			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	GlnR-family transcriptional regulator			0	0	0	
mycothiol synthase	2.3.1.189	mshD	mycothiol synthase	2.3.1.189	CDS	"Acetyl-CoA:Cys-GlcN-Ins acetyltransferase, mycothiol synthase MshD"			base_lit-s	0	0	
phosphate ABC transporter, ATP-binding protein	3.6.3.27	pstB	phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1)	3.6.3.27	CDS	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
phosphate transport system regulatory protein PhoU		phoU	phosphate transport system regulatory protein PhoU		CDS	Phosphate transport system regulatory protein PhoU			base_lit-s	lit-s	lit-s	
cell envelope-related function transcriptional attenuator common domain protein			transcriptional attenuator, LytR family		CDS	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"			base_tigr	map	pfam-sh	
TIM-barrel , nifR3 family protein			putative TIM-barrel protein, nifR3 family		CDS	tRNA dihydrouridine synthase B	1.-.-.-		base_tigr	map	gs-sh	
putative acyl-[acyl-carrier-protein] desaturase desA1			Fatty acid desaturase.		CDS	Fatty acid desaturase occurring in virulence cluster			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820092: hypothetical protein			base_one HP	base_one HP	lit-s	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	"transcriptional regulator, ArsR family"			gs-sh	gs-sh	lit-s	
cytidine and deoxycytidylate deaminase zinc-binding region family protein			Cytosine/adenosine deaminases		CDS	Deaminase			0	0	0	
putative transposase DNA-binding domain protein						Mobile element protein			base_one miss	0	base_one miss	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	O-Methyltransferase involved in polyketide biosynthesis			base_tigr	0	0	
TIGR04255 family protein			hypothetical protein		CDS	FIG00821728: hypothetical protein			base_one HP	lit-s	base_one HP	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
pE-PGRS FAMILY PROTEIN		PE_PGRS13	hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
putative predicted protein						FIG00823878: hypothetical protein			base_one miss	lit-s	base_one miss	
PE family protein			Ca2+-dependent lipid-binding protein, contains C2 domain		CDS	PE_PGRS			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
pknH-like extracellular domain protein			PknH-like extracellular domain.		CDS	POSSIBLE LIPOPROTEIN LPQQ			lit-s	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820906: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	COG4861: Uncharacterized protein conserved in bacteria			base_one HP	base_one HP	lit-s	
putative peptidase S15						FIG00822787: hypothetical protein			base_one miss	0	base_one miss	
putative predicted protein						FIG00821659: hypothetical protein			base_one miss	lit-s	base_one miss	
D-ala-D-ala dipeptidase family protein			D-alanyl-D-alanine dipeptidase	3.4.13.22	CDS	D-alanyl-D-alanine dipeptidase			0	0	base_lit-s	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase	2.1.1.-		0	lit-s	0	
proline-specific peptidase family protein			tricorn interacting aminopeptidase F1. Serine peptidase. MEROPS family S33	3.4.11.5	CDS	Proline iminopeptidase	3.4.11.5		base_tigr	map	base_ec	
putative membrane protein						PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one miss	0	base_one miss	
major Facilitator Superfamily protein			Arabinose efflux permease		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			0	0	0	
dehydrogenase E1 component family protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit	1.2.4.1	CDS	PROBABLE DEHYDROGENASE			tf_idf	tf_idf	tf_idf	
putative transcriptional regulatory protein NarL			two component transcriptional regulator, LuxR family		CDS	"DNA-binding response regulator, LuxR family"			0	0	0	
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			Signal transduction histidine kinase	2.7.13.3	CDS	POSSIBLE TWO COMPONENT SENSOR KINASE			0	0	orth	
multicopper oxidase family protein			Putative multicopper oxidases		CDS	Multicopper oxidase			lit-s	lit-s	lit-s	
putative lipoprotein lpqS			hypothetical protein		CDS	PROBABLE LIPOPROTEIN LPQS			base_one HP	lit-s	base_one HP	
pyridoxal-phosphate dependent enzyme family protein			Cysteine synthase	2.5.1.47	CDS	putative cysteine synthase A CysK2			0	0	orth	
major Facilitator Superfamily protein			Major Facilitator Superfamily.		CDS	PROBABLE CONSERVED INTEGRAL MEMBRANE TRANSPORT PROTEIN			lit-s	0	0	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	short chain dehydrogenase			0	lit-s	0	
helix-turn-helix domain of transposase ISL3 family protein			Helix-turn-helix domain of transposase family ISL3.		CDS	PUTATIVE TRANSPOSASE (FRAGMENT)			lit-s	0	0	
hypothetical protein						FIG00826747: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative fatty-acid-CoA ligase FadD16			hypothetical protein		CDS	POSSIBLE FATTY-ACID-COA LIGASE FADD16 (FATTY-ACID-COA SYNTHETASE) (FATTY-ACID-COA SYNTHASE)			base_one HP	0	base_one HP	
indole-3-pyruvate decarboxylase	4.1.1.74	ipdC	Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes	4.1.1.74	CDS	Pyruvate decarboxylase; Alpha-keto-acid decarboxylase	4.1.1.1, 4.1.1.-		base_ec	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00823411: hypothetical protein			lit-s	0	0	
coA-transferase III family protein			Predicted acyl-CoA transferases/carnitine dehydratase	5.1.99.4	CDS	Alpha-methylacyl-CoA racemase	5.1.99.4		0	0	base_ec	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00822577: hypothetical protein			lit-s	0	0	
aminotransferase class-V family protein			succinyldiaminopimelate aminotransferase apoenzyme (EC 2.6.1.17)	2.6.1.17	CDS	putative aminotransferase			0	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00822577: hypothetical protein			lit-s	0	0	
putative acyltransferase Rv0859			acetyl-CoA acetyltransferases	2.3.1.9	CDS	3-ketoacyl-CoA thiolase [isoleucine degradation]	2.3.1.16		0	0	base_ec-d	
enoyl-CoA hydratase/isomerase family protein			3-hydroxyacyl-CoA dehydrogenase	1.1.1.35, 4.2.1.17, 5.1.2.3	CDS	Enoyl-CoA hydratase [isoleucine degradation] / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase	4.2.1.17, 1.1.1.35, 5.1.2.3		0	0	base_ec-d	
type III restriction enzyme, res subunit			DNA or RNA helicases of superfamily II	3.6.4.12	CDS	DNA repair helicase			orth	orth	orth	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
helicase conserved C-terminal domain protein			Predicted transcriptional regulator		CDS	probable DNA-binding protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG057355: hypothetical protein			lit-s	base_one HP	base_one HP	
molybdenum cofactor biosynthesis protein C		moaC	molybdenum cofactor biosynthesis protein MoaC		CDS	Molybdenum cofactor biosynthesis protein MoaC			base_tigr	gs-sh	lit-s	
molybdenum cofactor synthesis domain			molybdopterin adenylyltransferase	2.7.7.75	CDS	Molybdenum cofactor biosynthesis protein MoaB			0	0	gs-sh	
moaE family protein			Molybdopterin converting factor, large subunit	2.-	CDS	Molybdenum cofactor biosynthesis protein MoaE			gs-sh	0	0	
transglycosylase-like domain protein			Chemotaxis protein histidine kinase and related kinases		CDS	FIG00820555: hypothetical protein			0	0	0	
thiS family protein			Molybdopterin converting factor, small subunit		CDS	Molybdenum cofactor biosynthesis protein MoaD			gs-sh	gs-sh	gs-sh	
molybdenum cofactor biosynthesis protein A		moaA	molybdenum cofactor biosynthesis protein A, bacterial		CDS	Molybdenum cofactor biosynthesis protein MoaA			base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			Predicted membrane protein		CDS	FIG020413: transmembrane protein			base_one HP	base_one HP	0	
'Cold-shock' DNA-binding domain protein			cold-shock DNA-binding protein family		CDS	Cold shock protein CspC			0	0	gs-sh	
PE family protein			PE family.		CDS	PE-PGRS virulence associated protein			lit-s	0	0	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	FadE10			0	0	0	
FIST N domain protein			Uncharacterized protein conserved in bacteria		CDS	FIG00822946: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2771).		CDS	POSSIBLE CONSERVED EXPORTED PROTEIN			base_one HP	base_one HP	0	
major Facilitator Superfamily protein			Arabinose efflux permease		CDS	possible membrane protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3027).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein			Protein of unknown function (DUF2530).		CDS	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	0	
						FIG00824650: hypothetical protein			base_both miss	base_one miss	base_one miss	
marR family protein			Transcriptional regulators		CDS	"Transcriptional regulator, MarR family"			gs-sh	gs-sh	gs-sh	
spoU rRNA Methylase family protein			rRNA methylases		CDS	putative rRNA methylase			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF3071).		CDS	FIG00996668: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2537).		CDS	PROBABLE TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	0	
putative phosphoserine aminotransferase			phosphoserine aminotransferase apoenzyme (EC 2.6.1.52)	2.6.1.52	CDS	Phosphoserine aminotransferase	2.6.1.52		base_tigr	lit-s	base_ec	
P-aminobenzoate N-oxygenase AurF family protein			P-aminobenzoate N-oxygenase AurF.		CDS	possible transmembrane protein			lit-s	0	0	
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			Uncharacterized protein conserved in bacteria		CDS	"phnB protein, putative"			0	0	gs-sh	
pyridine nucleotide-disulfide oxidoreductase family protein			NADPH-dependent glutamate synthase beta chain and related oxidoreductases	1.18.1.2	CDS	"Ferredoxin / Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type"	1.18.1.2		0	0	base_ec	
endonuclease/Exonuclease/phosphatase family protein			Uncharacterized protein conserved in bacteria		CDS	PROBABLE EXPORTED PROTEIN			0	0	0	
citrate synthase family protein			citrate synthase (EC 2.3.3.1)	2.3.3.1	CDS	Citrate synthase (si)	2.3.3.1		lit-s	tf_idf	base_ec	
bacterial regulatory s, luxR family protein			Predicted ATPase		CDS	"Disease resistance domain-containing protein / Transcriptional regulator, LuxR family"			gs-sh	0	0	
adenylate and Guanylate cyclase catalytic domain protein						Adenylyl cyclase class-3/4/guanylyl cyclase			base_one miss	0	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			methyltransferase, putative, TIGR00027 family		CDS	O-Methyltransferase involved in polyketide biosynthesis			0	0	0	
pyridine nucleotide-disulfide oxidoreductase family protein			Predicted flavoprotein involved in K+ transport		CDS	Cyclohexanone monooxygenase	1.14.13.22		0	0	0	
AAA ATPase domain protein			Predicted ATPase		CDS	Disease resistance domain-containing protein			0	0	0	
putative diacyglycerol O-acyltransferase tgs2			Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			0	0	0	
citrate (Si)-synthase	2.3.3.1	gltA	citrate synthase (EC 2.3.3.1)	2.3.3.1	CDS	Citrate synthase (si)	2.3.3.1		base_tigr	base_ec	base_ec	
FAD binding domain protein			Phytoene dehydrogenase and related proteins		CDS	Beta-carotene ketolase	1.14.-.-		0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2630).		CDS	FIG00821893: hypothetical protein			base_one HP	base_one HP	lit-s	
BON domain protein			Outer membrane protein and related peptidoglycan-associated (lipo)proteins		CDS	Outer membrane protein			0	0	0	
hypothetical protein			hypothetical protein		CDS	POSSIBLE MEMBRANE PROTEIN			base_lit-s	base_one HP	base_one HP	
putative conserved exported/membrane protein			hypothetical protein		CDS	POSSIBLE CONSERVED EXPORTED OR MEMBRANE PROTEIN			base_one HP	0	base_one HP	
sensor-type histidine kinase prrB	2.7.13.3	prrB	Signal transduction histidine kinase	2.7.13.3	CDS	Sensor-type histidine kinase prrB	2.7.13.3		base_ec	base_ec	base_ec	
transcriptional regulatory protein prrA		prrA	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	DNA-binding response regulator			gs-sh	0	0	
carboxyl transferase domain protein			Acetyl-CoA carboxylase alpha subunit	6.4.1.2	CDS	Acetyl-coenzyme A carboxyl transferase alpha chain / Acetyl-coenzyme A carboxyl transferase beta chain	6.4.1.2, 6.4.1.2		0	tf_idf	base_ec-d	
putative enoyl-CoA hydratase echA6			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		map	tf_idf	base_ec	
beta-lactamase superfamily domain protein			Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	Outer membrane protein romA			0	0	gs-sh	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Beta-lactamase	3.5.2.6		0	lit-s	0	
HAD ATPase, P-type, IC family protein	3.6.3.-		ATPase, P-type (transporting), HAD superfamily, subfamily IC	3.6.3.-	CDS	"Cation-transporting ATPase, E1-E2 family"			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820576: hypothetical protein			lit-s	base_one HP	base_one HP	
antitoxin Rv0909/MT0933			MT0933-like antitoxin protein.		CDS	FIG00821394: hypothetical protein			0	0	0	
toxin Rv0910/MT0934			Uncharacterized conserved protein		CDS	FIG00820677: hypothetical protein			0	0	lit-s	
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein			Predicted enzyme related to lactoylglutathione lyase		CDS	Putative hydroxylase			0	0	0	
putative membrane protein			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823217: hypothetical protein			lit-s	base_one HP	base_one HP	
retinal pigment epithelial membrane family protein			Lignostilbene-alpha,beta-dioxygenase and related enzymes		CDS	"Lignostilbene-alpha,beta-dioxygenase and related enzymes"			0	0	lit-s	
thiolase, C-terminal domain protein			Acetyl-CoA acetyltransferase	2.3.1.9	CDS	3-ketoacyl-CoA thiolase	2.3.1.16		0	0	base_ec-d	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
transporter, betaine/carnitine/choline transporter family protein			choline/carnitine/betaine transport		CDS	High-affinity choline uptake protein BetT			base_tigr	0	0	
hypothetical protein			hypothetical protein		CDS	FIG00821313: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG032766: hypothetical protein			base_one HP	base_one HP	lit-s	
acetyltransferase family protein			Predicted acetyltransferase		CDS	FIG001353: Acetyltransferase			lit-s	lit-s	lit-s	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Probable transposase for the insertion element IS2606			0	0	0	
resolvase, N terminal domain protein			Predicted site-specific integrase-resolvase		CDS	POSSIBLE RESOLVASE			0	0	0	
putative transposase family protein			Transposase and inactivated derivatives		CDS	Transposase			0	lit-s	0	
conserved hypothetical protein			Phage-related replication protein		CDS	FIG00823130: hypothetical protein			base_one HP	base_one HP	0	
metal ion transporter, metal ion family protein			NRAMP (natural resistance-associated macrophage protein) metal ion transporters		CDS	Manganese transport protein MntH			base_tigr	0	0	
NADPH-dependent FMN reductase family protein			NADPH-dependent FMN reductase.		CDS	BRAMP			lit-s	0	0	
dihydrodipicolinate reductase, family protein			Uncharacterized conserved protein related to dihydrodipicolinate reductase		CDS	FIG00820002: hypothetical protein			tf_idf	0	0	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.159	CDS	7-alpha-hydroxysteroid dehydrogenase	1.1.1.159		0	0	base_ec	
phosphate ABC transporter, phosphate-binding protein PstS		pstS	phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, permease protein PstC		pstC	phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)		CDS	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
serine/threonine-protein kinase pknD	2.7.11.1	pknD	NHL repeat./Protein kinase domain.	2.7.11.1	CDS	Serine/threonine-protein kinase pknD	2.7.11.1		base_ec	base_ec	base_ec	
phosphate ABC transporter, permease protein PstA		pstA	phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)		CDS	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, phosphate-binding protein PstS		pstS	phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, ATP-binding protein	3.6.3.27	pstB	phosphate ABC transporter ATP-binding protein, PhoT family (TC 3.A.1.7.1)	3.6.3.27	CDS	Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, phosphate-binding protein PstS		pstS	phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1)		CDS	"Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)"			base_tigr	gs-sh	gs-sh	
phosphate ABC transporter, permease protein PstC		pstC	phosphate ABC transporter membrane protein 1, PhoT family (TC 3.A.1.7.1)		CDS	Phosphate transport system permease protein PstC (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
ku protein			DNA end-binding protein Ku		CDS	Ku domain protein			base_tigr	lit-s	map	
phosphate ABC transporter, permease protein PstA		pstA	phosphate ABC transporter membrane protein 2, PhoT family (TC 3.A.1.7.1)		CDS	Phosphate transport system permease protein PstA (TC 3.A.1.7.1)			base_tigr	gs-sh	gs-sh	
DNA ligase D		ligD	ATP-dependent DNA ligase LigD ligase module/ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module	6.5.1.1	CDS	"ATP-dependent DNA ligase clustered with Ku protein, LigD"	6.5.1.1		gs-sh	map	base_ec	
metallo-beta-lactamase superfamily protein			2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)		CDS	hypothetical protein			0	base_one HP	base_one HP	
putative F420-dependent oxidoreductase, Rv2161c family domain protein			probable F420-dependent oxidoreductase, Rv2161c family		CDS	Hydride transferase 1 (Fragment)			base_tigr	0	0	
STAS domain protein			STAS domain.		CDS	FIG00823384: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Cyclohexanone monooxygenase	1.14.13.22		lit-s	base_one HP	base_one HP	
formamidopyrimidine-DNA glycosylase H2TH domain protein			Formamidopyrimidine-DNA glycosylase	4.2.99.18, 3.2.2.23	CDS	Formamidopyrimidine-DNA glycosylase	3.2.2.23		0	0	base_lit-s	
short chain dehydrogenase family protein			Short-chain dehydrogenases of various substrate specificities		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"	1.1.1.-		0	0	0	
glucose-6-phosphate isomerase	5.3.1.9	pgi	glucose-6-phosphate isomerase (EC 5.3.1.9)	5.3.1.9	CDS	Glucose-6-phosphate isomerase	5.3.1.9		base_ec	base_ec	base_ec	
secreted antigen 85-C FbpC_2 domain protein		fbpC_2				FIG00820067: hypothetical protein			base_one miss	0	base_one miss	
hypothetical protein						FIG00820095: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			chorismate mutase (EC 5.4.99.5)	5.4.99.5	CDS	Chorismate mutase I	5.4.99.5		base_one HP	base_one HP	base_ec	
ATP-dependent DNA helicase PcrA	3.6.4.12	pcrA	ATP-dependent DNA helicase PcrA	3.6.4.12,3.6.1.-	CDS	ATP-dependent DNA helicase UvrD/PcrA			base_lit-s	gs-sh	gs-sh	
peptidase M23 family protein			Membrane proteins related to metalloendopeptidases		CDS	Phage peptidoglycan binding endopeptidase			0	0	0	
succinyl-CoA ligase [ADP-forming] subunit beta	6.2.1.5	sucC	succinyl-CoA synthetase (ADP-forming) beta subunit (EC 6.2.1.5)	6.2.1.5	CDS	Succinyl-CoA ligase [ADP-forming] beta chain	6.2.1.5		base_ec	base_ec	base_ec	
succinate-CoA ligase, alpha subunit	6.2.1.-	sucD	succinyl-CoA synthetase (ADP-forming) alpha subunit (EC 6.2.1.5)	6.2.1.5	CDS	Succinyl-CoA ligase [ADP-forming] alpha chain	6.2.1.5		base_tigr	map	base_ec	
putative F420-dependent oxidoreductase, Rv2161c family domain protein			probable F420-dependent oxidoreductase, Rv2161c family		CDS	Hydride transferase 1 (Fragment)			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	antigen 34 kDa			lit-s	base_one HP	base_one HP	
putative membrane protein			hypothetical protein		CDS	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN			base_one HP	orth	base_one HP	
phosphoribosylglycinamide formyltransferase	2.1.2.2	purN	phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent	2.1.2.2	CDS	Phosphoribosylglycinamide formyltransferase	2.1.2.2		base_tigr	base_ec	base_ec	
phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	2.1.2.3	purH	IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase	2.1.2.3, 3.5.4.10,3.5.4.10, 2.1.2.3	CDS	IMP cyclohydrolase / Phosphoribosylaminoimidazolecarboxamide formyltransferase	3.5.4.10, 2.1.2.3		base_tigr	base_ec-d	base_ec-d	
AAA domain family protein			Mg-chelatase subunit ChlI	6.6.1.1	CDS	"Magnesium chelatase, subunit ChlI"	6.6.1.1		0	0	base_ec	
von Willebrand factor type A domain protein			Uncharacterized protein with a von Willebrand factor type A (vWA) domain		CDS	FIG019045: long form Mg-chelase associated protein with vWA domain			tf_idf	0	0	
putative antitoxin VapB9			hypothetical protein		CDS	Antitoxin 1			base_one HP	0	base_one HP	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Toxin 1, PIN domain"			pfam-sh	pfam-sh	pfam-sh	
putative membrane protein			hypothetical protein		CDS	PROBABLE INTEGRAL MEMBRANE PROTEIN			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	"lipoprotein, putative"			lit-s	base_one HP	base_one HP	
alpha/beta hydrolase family protein			Alpha/beta hydrolase.		CDS	Putative secreted protein			lit-s	0	0	
conserved hypothetical protein						FIG00821697: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820456: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF1707).		CDS	FIG00821093: hypothetical protein			base_one HP	base_one HP	lit-s	
metal-sensitive transcriptional repressor family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00821819: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1490).		CDS	FIG00822349: hypothetical protein			base_one HP	base_one HP	lit-s	
copper-translocating P-type ATPase	3.6.3.4		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		0	base_ec-d	0	
putative membrane protein			hypothetical protein		CDS	probable integral membrane protein			base_one HP	0	base_one HP	
enoyl-CoA hydratase			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Methylglutaconyl-CoA hydratase	4.2.1.18		0	0	base_ec-d	
acyl-CoA dehydrogenase fadE12	1.3.99.-	fadE12	Acyl-CoA dehydrogenases		CDS	PROBABLE ACYL-COA DEHYDROGENASE FADE12( EC:1.3.99.- )			gs-sh	tf_idf	map	
carbamoyl-phosphate synthase L chain, ATP binding domain protein			Acetyl/propionyl-CoA carboxylase, alpha subunit	6.4.1.3	CDS	Methylcrotonyl-CoA carboxylase biotin-containing subunit	6.4.1.4		0	0	base_ec-d	
carboxyl transferase domain protein			Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)		CDS	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit	6.4.1.4		0	0	0	
putative acyl-CoA dehydrogenase			Acyl-CoA dehydrogenases	1.3.99.3	CDS	Isovaleryl-CoA dehydrogenase	1.3.99.10		0	0	base_ec-d	
conserved hypothetical protein			Protein of unknown function (DUF1446).		CDS	expressed protein			base_one HP	base_one HP	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
PE family protein			40-residue YVTN family beta-propeller repeat		CDS	PE_PGRS family protein			0	0	0	
ribosomal protein L32		rpmF	LSU ribosomal protein L32P		CDS	LSU ribosomal protein L32p			base_tigr	orth	lit-s	
kelch motif family protein			40-residue YVTN family beta-propeller repeat		CDS	PE_PGRS family protein			0	0	0	
response regulator		mprA	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Mycobacterial persistence regulator MprA (Two component response transcriptional regulatory protein)			gs-sh	0	0	
signal transduction histidine-protein kinase/phosphatase mprB	3.1.3.-	mprB	Signal transduction histidine kinase	2.7.13.3	CDS	Osmosensitive K+ channel histidine kinase KdpD	2.7.3.-		gs-sh	gs-sh	gs-sh	
trypsin family protein			Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain	3.4.21.-	CDS	Heat shock protein HtrA			0	0	gs-sh	
pterin-4-alpha-carbinolamine dehydratase MoaB2		moaB2	molybdenum cofactor synthesis domain		CDS	Molybdenum cofactor biosynthesis protein MoaB			gs-sh	gs-sh	gs-sh	
large conductance mechanosensitive channel protein		mscL	large conductance mechanosensitive channel protein		CDS	Large-conductance mechanosensitive channel			base_lit-s	gs-sh	orth	
ABC transporter family protein			ABC-type antimicrobial peptide transport system, ATPase component		CDS	AttE component of AttEFGH ABC transport system			0	0	0	
ftsX-like permease family protein			ABC-type transport system, involved in lipoprotein release, permease component		CDS	AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system			gs-sh	0	0	
hydroxyneurosporene synthase family protein			Predicted secreted hydrolase		CDS	AttH component of AttEFGH ABC transport system			0	0	0	
geranylgeranyl pyrophosphate synthase	2.5.1.-	ispB	Geranylgeranyl pyrophosphate synthase	2.5.1.30	CDS	"Octaprenyl diphosphate synthase / Dimethylallyltransferase / (2E,6E)-farnesyl diphosphate synthase / Geranylgeranyl diphosphate synthase"	2.5.1.90, 2.5.1.1, 2.5.1.10, 2.5.1.29		lit-s	0	base_ec-d	
SAF-like family protein			Flagellar basal body P-ring biosynthesis protein		CDS	Heat shock protein 22.5 (Hsp22.5)			0	0	0	
			putative regulatory protein, FmdB family		CDS	Type I antifreeze protein			base_one miss	base_one miss	0	
hypothetical protein									base_one HP	base_one HP	base_both miss	
5-formyltetrahydrofolate cyclo-ligase	6.3.3.2		5,10-methenyltetrahydrofolate synthetase		CDS	5-formyltetrahydrofolate cyclo-ligase	6.3.3.2		base_tigr	base_lit-s	map	
UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE	2.7.7.9	galU1	UDP-glucose pyrophosphorylase (EC 2.7.7.9)	2.7.7.9	CDS	UTP--glucose-1-phosphate uridylyltransferase	2.7.7.9		base_ec	base_ec	base_ec	
molybdenum cofactor synthesis domain protein			molybdenum cofactor synthesis domain		CDS	Molybdopterin biosynthesis protein MoeA			base_tigr	map	gs-sh	
acetyltransferase family protein			Acetyltransferases, including N-acetylases of ribosomal proteins	2.3.1.128	CDS	Ribosomal-protein-S5p-alanine acetyltransferase			0	0	0	
putative transmembrane protein			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822908: hypothetical protein			lit-s	base_one HP	base_one HP	
methyltransferase domain protein			hypothetical protein		CDS	FIG00821497: hypothetical protein			base_one HP	0	base_one HP	
methyltransferase domain protein						methyltransferase			base_one miss	lit-s	base_one miss	
acetyltransferase family protein			Cyclic nucleotide-binding domain./Acetyltransferase (GNAT) domain.		CDS	cyclic nucleotide-binding protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820856: hypothetical protein			lit-s	base_one HP	base_one HP	
2OG-Fe(II) oxygenase superfamily protein			DNA-N1-methyladenine dioxygenase	1.14.11.-	CDS	Alkylated DNA repair protein AlkB			0	0	0	
arginine deiminase	3.5.3.6	arcA	arginine deiminase (EC 3.5.3.6)	3.5.3.6	CDS	Arginine deiminase	3.5.3.6		base_tigr	base_ec	base_ec	
dolichyl-phosphate-mannose-mannosyltransferase family protein			Dolichyl-phosphate-mannose--protein O-mannosyl transferase		CDS	CONSERVED MEMBRANE PROTEIN			0	0	orth	
tetrapyrrole (Corrin/Porphyrin) Methylases family protein			probable S-adenosylmethionine-dependent methyltransferase, YraL family	2.1.1.198	CDS	rRNA small subunit methyltransferase I			0	0	gs-sh	
putative membrane protein			hypothetical protein		CDS	elastin			base_one HP	0	base_one HP	
aminodeoxychorismate synthase, component I	2.6.1.85	pabB	aminodeoxychorismate synthase, component I, bacterial clade	2.6.1.85	CDS	"Para-aminobenzoate synthase, aminase component"	2.6.1.85		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820568: hypothetical protein			lit-s	base_one HP	base_one HP	
methionyl-tRNA synthetase	6.1.1.10	metG	methionyl-tRNA synthetase (EC 6.1.1.10)	6.1.1.10	CDS	Methionyl-tRNA synthetase	6.1.1.10		base_ec	base_ec	base_ec	
hydrolase, TatD family protein			hydrolase, TatD family	3.1.21.-	CDS	Putative deoxyribonuclease YcfH			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Cell wall-binding protein			base_one HP	base_one HP	0	
dimethyladenosine transferase	2.1.1.-	ksgA	dimethyladenosine transferase	2.1.1.182,2.1.1.-	CDS	SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase	2.1.1.182		base_lit-s	gs-sh	gs-sh	
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	2.7.1.148	ispE	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148)	2.7.1.148	CDS	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	2.7.1.148		base_tigr	base_ec	base_ec	
putative ligase Rv1013			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		0	0	0	
peptidyl-tRNA hydrolase	3.1.1.29	pth	peptidyl-tRNA hydrolase (EC 3.1.1.29)	3.1.1.29	CDS	Peptidyl-tRNA hydrolase	3.1.1.29		base_tigr	base_ec	base_ec	
ribosomal protein L25, Ctc-form			LSU ribosomal protein L25P		CDS	LSU ribosomal protein L25p			base_tigr	map	lit-s	
putative lipoLpqN family protein			Probable lipoprotein LpqN.		CDS	"lipoprotein, putative"			0	0	0	
hypothetical protein						FIG00825050: hypothetical protein			base_one HP	base_one HP	base_one miss	
ribose-phosphate pyrophosphokinase	2.7.6.1	prs	ribose-phosphate pyrophosphokinase	2.7.6.1	CDS	Ribose-phosphate pyrophosphokinase	2.7.6.1		base_lit-s	base_ec	base_ec	
UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	2.7.7.23	glmU	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase	2.3.1.157, 2.7.7.23,2.7.7.23, 2.3.1.157	CDS	N-acetylglucosamine-1-phosphate uridyltransferase / Glucosamine-1-phosphate N-acetyltransferase	2.7.7.23, 2.3.1.157		base_tigr	base_ec-d	base_ec-d	
hypothetical protein						FIG00825223: hypothetical protein			base_one HP	base_one HP	base_one miss	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
transcription-repair coupling factor	3.6.1.-	mfd	transcription-repair coupling factor	3.6.4.-	CDS	Transcription-repair coupling factor			base_lit-s	lit-s	lit-s	
nucleoside triphosphate pyrophosphohydrolase	3.6.1.8	mazG	Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain	3.6.1.19	CDS	Nucleoside triphosphate pyrophosphohydrolase MazG	3.6.1.8		base_ec-d	base_ec	base_ec-d	
transglycosylase SLT domain protein			Transglycosylase SLT domain.		CDS	FIG00997322: hypothetical protein			lit-s	0	0	
phosphopyruvate hydratase	4.2.1.11	eno	enolase (EC 4.2.1.11)	4.2.1.11	CDS	Enolase	4.2.1.11		base_tigr	base_ec	base_ec	
septum formation initiator family protein			Septum formation initiator		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			lit-s	map	gs-sh	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG004853: possible toxin to DivIC			base_one HP	base_one HP	0	
ppx/GppA phosphatase family protein			Exopolyphosphatase	3.6.1.11, 3.6.1.40	CDS	Exopolyphosphatase	3.6.1.11		gs-sh	gs-sh	base_lit-s	
transcriptional regulatory , C terminal family protein			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	DNA-binding response regulator KdpE			0	0	0	
						FIG00821068: hypothetical protein			base_both miss	base_one miss	base_one miss	
universal stress family protein			Osmosensitive K+ channel histidine kinase	2.7.13.3	CDS	Osmosensitive K+ channel histidine kinase KdpD	2.7.3.-		0	0	gs-sh	
K+-transporting ATPase, A subunit	3.6.3.12	kdpA	K+-transporting ATPase, KdpA	3.6.3.12	CDS	Potassium-transporting ATPase A chain (TC 3.A.3.7.1)	3.6.3.12		base_tigr	base_ec	base_ec	
K+-transporting ATPase, B subunit	3.6.3.12	kdpB	K+-transporting ATPase, B subunit	3.6.3.12	CDS	Potassium-transporting ATPase B chain (TC 3.A.3.7.1)	3.6.3.12		base_lit-s	base_ec	base_ec	
K+-transporting ATPase, C subunit	3.6.3.12	kdpC	K+-transporting ATPase, C subunit	3.6.3.12	CDS	Potassium-transporting ATPase C chain (TC 3.A.3.7.1)	3.6.3.12		base_lit-s	base_ec	base_ec	
putative sensor histidine kinase TcrY			Signal transduction histidine kinase	2.7.13.3	CDS	Sensor protein basS/pmrB	2.7.3.-		tf_idf	map	gs-sh	
putative transcriptional regulatory protein TcrX			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	DNA-binding response regulator TrcR			0	0	0	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	transposase			0	0	0	
putative transposase			hypothetical protein		CDS	PROBABLE TRANSPOSASE (FRAGMENT)			base_one HP	tf_idf	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Mobile element protein			lit-s	base_one HP	base_one HP	
putative ESAT-6-like protein 6			Proteins of 100 residues with WXG.		CDS	ESAT-6-like protein EsxL			0	0	0	
putative ESAT-6-like protein 7			WXG100 family type VII secretion target		CDS	COG0840: Methyl-accepting chemotaxis protein			0	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PE family protein			Polymorphic PE/PPE proteins C terminal./PE family.		CDS	PPE family protein			0	0	pfam-sh	
hypothetical protein						hypothetical protein			base_one HP	base_lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822458: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00824608: hypothetical protein			base_one HP	base_one HP	base_one miss	
transposase DDE domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			Transposase and inactivated derivatives		CDS	FIG00821422: hypothetical protein			base_one HP	base_one HP	0	
trypsin family protein			Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	protease-related protein			0	0	0	
conserved hypothetical protein			Predicted transcriptional regulator		CDS	FIG00820089: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Nucleotidyl transferase of unknown function (DUF1814).		CDS	FIG00821115: hypothetical protein			base_one HP	base_one HP	0	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821061: hypothetical protein			lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00820551: hypothetical protein			base_lit-s	base_one HP	base_one HP	
marR family protein			Transcriptional regulators		CDS	Organic hydroperoxide resistance transcriptional regulator			gs-sh	0	0	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"	1.1.1.-		0	0	0	
conserved hypothetical protein			Helix-turn-helix domain./Nucleotidyl transferase of unknown function (DUF1814).		CDS	FIG00821028: hypothetical protein			base_one HP	base_one HP	0	
						Abortive infection protein AbiGI			base_both miss	base_one miss	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
hypothetical protein			hypothetical protein		CDS	hypothetical protein			base_lit-s	base_lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS				lit-s	base_one HP	base_one HP	
putative gp85						Integrase			base_one miss	0	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820480: hypothetical protein			base_one HP	base_one HP	lit-s	
lactonase, 7-bladed beta-propeller family protein			Uncharacterized conserved protein		CDS	"surface antigen, putative"			0	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
dihydrodipicolinate reductase, family protein			Uncharacterized conserved protein related to dihydrodipicolinate reductase		CDS	FIG00821199: hypothetical protein			tf_idf	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00820309: hypothetical protein			lit-s	0	0	
glutamine amidotransferase domain protein			Predicted glutamine amidotransferase		CDS	"glutamine amidotransferases, class-II"			lit-s	0	0	
patatin-like phospholipase family protein			Predicted esterase of the alpha-beta hydrolase superfamily		CDS	"probably phosphoesterase, evidenced by COGnitor"			0	0	0	
patatin-like phospholipase family protein			Predicted esterase of the alpha-beta hydrolase superfamily		CDS	UPF0028 protein YchK			0	0	0	
putative lipoprotein lpqV			hypothetical protein		CDS	PUTATIVE LIPOPROTEIN LPQV			base_one HP	lit-s	base_one HP	
cysteine dioxygenase type I family protein			Cysteine dioxygenase type I.		CDS	FIG00822063: hypothetical protein			lit-s	0	0	
rhodanese-like domain protein			Rhodanese-related sulfurtransferase		CDS	FIG00820003: hypothetical protein			orth	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Predicted membrane protein (DUF2319)			base_one HP	base_one HP	lit-s	
putative enoyl-CoA hydratase echA8			short chain enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	enoyl-CoA hydratase( EC:4.2.1.17 )			0	0	0	
enoyl-CoA hydratase/isomerase family protein			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	3-hydroxyisobutyryl-CoA hydrolase	3.1.2.4		0	orth	base_ec-d	
inhibitor of apoptosis-promoting Bax1 family protein			Predicted membrane protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00823211: hypothetical protein			base_one HP	base_one HP	lit-s	
acetyl-CoA C-acetyltransferase family protein			acetyl-CoA acetyltransferases	2.3.1.9	CDS	3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase	2.3.1.16, 2.3.1.9		base_tigr	0	base_ec-d	
GDSL-like Lipase/Acylhydrolase family protein			Lysophospholipase L1 and related esterases		CDS	CONSERVED EXPORTED PROTEIN			0	0	0	
alpha/beta hydrolase fold family protein			Esterase/lipase		CDS	esterase			0	0	0	
cystathionine beta-synthase	4.2.1.22		cystathionine beta-synthase (EC 4.2.1.22)	4.2.1.22	CDS	Cystathionine beta-synthase	4.2.1.22		base_tigr	base_ec	base_ec	
RDD family protein			RDD family.		CDS	Proline-rich antigen homolog			lit-s	orth	map	
cystathionine gamma-synthase MetB		metB	cystathionine gamma-lyase	2.5.1.48,4.4.1.1	CDS	Cystathionine gamma-lyase	4.4.1.1		gs-sh	gs-sh	base_ec-d	
transcription elongation factor greA		greA	transcription elongation factor GreA		CDS	Transcription elongation factor GreA			lit-s	lit-s	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF4307).		CDS	FIG00821098: hypothetical protein			base_one HP	base_one HP	lit-s	
mycothiol conjugate amidase Mca		mca	mycothiol conjugate amidase Mca		CDS	Mycothiol S-conjugate amidase Mca			base_lit-s	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	probable secreted protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Highly conserved protein containing a thioredoxin domain		CDS	Thymidylate kinase	2.7.4.9		base_one HP	base_one HP	0	
channel , hemolysin III family protein			channel protein, hemolysin III family		CDS	COG1272: Predicted membrane protein hemolysin III homolog			base_tigr	0	0	
di-trans,poly-cis-decaprenylcistransferase	2.5.1.31	uppS	Undecaprenyl pyrophosphate synthetase	2.5.1.68,2.5.1.31	CDS	"(2E,6Z)-farnesyl diphosphate synthase"	2.5.1.68		base_tigr	base_ec-d	base_ec-d	
PE family protein			PE family.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
undecaprenyl diphosphate synthase family protein			Undecaprenyl pyrophosphate synthase		CDS	Undecaprenyl diphosphate synthase	2.5.1.31		0	lit-s	0	
PE family protein						PE family protein			base_one miss	base_lit-s	base_one miss	
pE family protein			hypothetical protein		CDS	PE family protein			base_one HP	lit-s	base_one HP	
putative predicted protein						hypothetical protein			base_one miss	base_one HP	base_one HP	
glycosyl hydrolase 12 family protein			Glycosyl hydrolase family 12.	3.2.1.4	CDS	"PROBABLE CELLULASE CELA2B (ENDO-1,4-BETA-GLUCANASE) (ENDOGLUCANASE) (CARBOXYMETHYL CELLULASE)"	3.2.1.4		lit-s	map	base_ec	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
pantothenate kinase	2.7.1.33	coaA	pantothenate kinase (EC 2.7.1.33)	2.7.1.33	CDS	Pantothenate kinase	2.7.1.33		base_tigr	base_ec	base_ec	
serine hydroxymethyltransferase 1	2.1.2.1	glyA1	serine hydroxymethyltransferase (EC 2.1.2.1)	2.1.2.1	CDS	Serine hydroxymethyltransferase 1	2.1.2.1		base_ec	base_ec	base_ec	
putative acyl-[acyl-carrier-protein] desaturase desA2			Fatty acid desaturase.		CDS	Fatty acid desaturase occurring in virulence cluster			0	0	0	
PIN domain protein			Predicted ATPase related to phosphate starvation-inducible protein PhoH		CDS	Predicted ATPase related to phosphate starvation-inducible protein PhoH			0	0	base_lit-s	
polysaccharide deacetylase family protein			Predicted xylanase/chitin deacetylase		CDS	Possible glycosyl hydrolase	3.-.-.-		orth	orth	orth	
putative glycine and proline rich membrane protein			hypothetical protein		CDS	PROBABLE MEMBRANE GLYCINE AND PROLINE RICH PROTEIN			base_one HP	lit-s	base_one HP	
fumarate hydratase class II	4.2.1.2	fumC	fumarase, class II (EC 4.2.1.2)	4.2.1.2	CDS	Fumarate hydratase class II	4.2.1.2		base_ec	base_ec	base_ec	
fructose-1,6-bisphosphatase, class II	3.1.3.11	glpX	fructose-1,6-bisphosphatase, class II	3.1.3.11	CDS	"Fructose-1,6-bisphosphatase, GlpX type"	3.1.3.11		base_lit-s	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF4245).		CDS	FIG00820022: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Predicted permease		CDS	CONSERVED MEMBRANE PROTEIN			base_one HP	base_one HP	0	
mRNA interferase MazF3	3.1.-.-	mazF3	Growth inhibitor	3.1.-	CDS	"Death on curing protein, Doc toxin"			0	0	0	
antitoxin MazE3		mazE3	hypothetical protein		CDS	"Prevent host death protein, Phd antitoxin"			base_one HP	0	base_one HP	
alpha/beta hydrolase fold family protein			Carboxylesterase type B	3.1.1.-	CDS	Carboxylesterase	3.1.1.1		0	0	0	
carboxylesterase family protein						"Carboxylesterase, type B"			base_one miss	0	base_one miss	
carboxylesterase family protein			Carboxylesterase type B	3.1.1.-	CDS	"Carboxylesterase, type B"			0	0	lit-s	
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase	5.3.3.1		Nucleoside-diphosphate-sugar epimerases	1.1.1.145, 5.3.3.1	CDS	PROBABLE CHOLESTEROL DEHYDROGENASE			base_ec-d	0	0	
exodeoxyribonuclease VII, small subunit	3.1.11.6	xseB	Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)	3.1.11.6	CDS	Exodeoxyribonuclease VII small subunit	3.1.11.6		base_tigr	base_ec	base_ec	
exodeoxyribonuclease VII, large subunit	3.1.11.6	xseA	Exodeoxyribonuclease VII large subunit (EC 3.1.11.6)	3.1.11.6	CDS	Exodeoxyribonuclease VII large subunit	3.1.11.6		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00997309: hypothetical protein			lit-s	base_one HP	base_one HP	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2	ispH	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	1.17.1.2	CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2		base_tigr	base_lit-s	base_ec	
putative membrane protein			hypothetical protein		CDS	INTEGRAL MEMBRANE PROTEIN (Rhomboid family)			base_one HP	0	base_one HP	
50S ribosome-binding GTPase family protein			GTP-binding protein YchF		CDS	GTP-binding and nucleic acid-binding protein YchF			0	0	gs-sh	
antitoxin VapB32		vapB32	Uncharacterized protein conserved in bacteria (DUF2191).		CDS	FIG00820531: hypothetical protein			0	0	lit-s	
putative ribonuclease VapC32			Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			0	0	pfam-sh	
nlpC/P60 family protein			hypothetical protein		CDS	hypothetical protein Rv1115			base_one HP	0	base_one HP	
pe family domain protein			hypothetical protein		CDS	PE family protein			base_one HP	lit-s	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
antibiotic biosynthesis monooxygenase family protein			Uncharacterized conserved protein		CDS	FIG00822251: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG022780: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein Rv1119c			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820811: hypothetical protein			lit-s	base_one HP	base_one HP	
adenylate and Guanylate cyclase catalytic domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	lipJ			0	0	gs-sh	
glucose-6-phosphate dehydrogenase	1.1.1.49	zwf	glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	1.1.1.49	CDS	Glucose-6-phosphate 1-dehydrogenase	1.1.1.49		base_tigr	base_ec	base_ec	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	1.11.1.-	CDS	Possible peroxidase bpoB (Non-haem peroxidase)	1.11.1.-		0	0	gs-sh	
6-phosphogluconate dehydrogenase	1.1.1.44	gnd	6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)	1.1.1.44	CDS	"6-phosphogluconate dehydrogenase, decarboxylating"	1.1.1.44		base_tigr	base_ec	base_ec	
hypothetical protein						FIG00821602: hypothetical protein			base_one HP	base_one HP	base_one miss	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.3.2.9	CDS	Probable epoxide hydrolase ephC	3.3.2.9		0	0	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG028963: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823918: hypothetical protein			lit-s	base_one HP	base_one HP	
pyruvate phosphate dikinase, PEP/pyruvate binding domain protein			Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	2.7.9.1	CDS	"Pyruvate,phosphate dikinase"	2.7.9.1		0	0	base_ec	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	FIG00829478: hypothetical protein			base_one HP	base_one HP	lit-s	
helix-turn-helix family protein			Predicted transcriptional regulator		CDS	"Transcriptional regulator, XRE family"			0	0	tf_idf	
mmgE/PrpD family protein			Uncharacterized protein involved in propionate catabolism	4.2.1.79	CDS	2-methylcitrate dehydratase	4.2.1.79		gs-sh	gs-sh	base_ec	
2-methylcitrate synthase 1	2.3.3.5	prpC1	2-methylcitrate synthase/citrate synthase II	2.3.3.1	CDS	2-methylcitrate synthase	2.3.3.5		base_ec-d	base_ec	base_ec-d	
conserved hypothetical protein			Transmembrane protein of unknown function (DUF3556).		CDS	CONSERVED MEMBRANE PROTEIN			base_one HP	base_one HP	0	
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	2.1.1.14	metE	methionine synthase (B12-independent) (EC 2.1.1.14)	2.1.1.14	CDS	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	2.1.1.14		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	MTCI65.01 protein			lit-s	base_one HP	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
thiolase, C-terminal domain protein			Acetyl-CoA acetyltransferase	2.3.1.9	CDS	ketoacyl-CoA thiolase-related protein			0	0	orth	
carnitinyl-CoA dehydratase	4.2.1.-		Enoyl-CoA hydratase/carnithine racemase		CDS	Enoyl-CoA hydratase	4.2.1.17		0	0	0	
putative enoyl-CoA hydratase/isomerase						FIG00825033: hypothetical protein			base_one miss	0	base_one miss	
FAD binding domain protein			Dehydrogenases (flavoproteins)		CDS	PUTATIVE OXIDOREDUCTASE			0	0	0	
isoprenylcysteine carboxyl methyltransferase family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00823635: hypothetical protein			0	0	lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
CAAX protease self-immunity family protein			CAAX protease self-immunity.		CDS	PROBABLE INTEGRAL MEMBRANE PROTEIN			lit-s	0	0	
enoyl-CoA hydratase/isomerase			Enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		0	0	base_ec	
enoyl-CoA hydratase/isomerase			Enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		tf_idf	tf_idf	base_ec	
coA-transferase III family protein			Predicted acyl-CoA transferases/carnitine dehydratase	5.1.99.4	CDS	Alpha-methylacyl-CoA racemase	5.1.99.4		0	0	base_ec	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	3-hydroxyacyl-CoA dehydrogenase [isoleucine degradation]	1.1.1.35		0	0	0	
MMPL family protein			Predicted drug exporters of the RND superfamily		CDS	Transmembrane transport protein MmpL13b			0	0	0	
MMPL family protein			Predicted drug exporters of the RND superfamily		CDS	Transmembrane transport protein MmpL13b			0	0	0	
methyltransferase domain protein			Methyltransferase domain.		CDS	Methyltransferase	2.1.1.-		lit-s	lit-s	lit-s	
conserved hypothetical protein						FIG00820117: hypothetical protein			base_one HP	base_one HP	base_one miss	
hypothetical protein						Partial REP13E12 repeat protein			base_one HP	base_one HP	base_one miss	
HNH endonuclease family protein			Domain of unknown function (DUF222)./HNH endonuclease.		CDS	Partial REP13E12 repeat protein			pfam-sh	0	0	
conserved hypothetical protein			Transposase and inactivated derivatives		CDS	FIG00821422: hypothetical protein			base_one HP	base_one HP	0	
transposase DDE domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
NAD-dependent deacetylase	3.5.1.-	cobB	NAD-dependent protein deacetylases, SIR2 family	3.5.1.-	CDS	NAD-dependent protein deacetylase of SIR2 family			gs-sh	map	pfam-sh	
leucine carboxyl methyltransferase family protein			O-Methyltransferase involved in polyketide biosynthesis		CDS	omt (omt)			0	0	0	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820224: hypothetical protein			base_one HP	base_one HP	lit-s	
putative pyridoxine/pyridoxamine 5'-phosphate oxidase			PPOX class probable F420-dependent enzyme		CDS	"Pyridoxine 5'-phosphate oxidase, Rv1155"			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821392: hypothetical protein			lit-s	base_one HP	base_one HP	
hhH-GPD superbase excision DNA repair family protein			uncharacterized HhH-GPD family protein		CDS	FIG00822543: hypothetical protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00824206: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Conserved alanine and proline rich protein			lit-s	base_one HP	base_one HP	
putative pterin-4-alpha-carbinolamine dehydratase			pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	4.2.1.96	CDS	Pterin-4-alpha-carbinolamine dehydratase	4.2.1.96		lit-s	lit-s	base_ec	
polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol pentamannoside mannosyltransferase	2.4.1.-	pimE	Protein of unknown function (DUF2029).	2.4.1.-	CDS	probable conserved membrane protein			gs-sh	0	0	
NUDIX domain protein			ADP-ribose pyrophosphatase	3.6.1.-	CDS	"Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase)"	3.6.1.-		0	0	gs-sh	
nitrate reductase, alpha subunit	1.7.99.4		respiratory nitrate reductase alpha subunit apoprotein	1.7.99.4	CDS	Respiratory nitrate reductase alpha chain	1.7.99.4		base_tigr	base_ec	base_ec	
nitrate reductase, beta subunit	1.7.99.4	narH	respiratory nitrate reductase beta subunit	1.7.99.4	CDS	Respiratory nitrate reductase beta chain	1.7.99.4		base_tigr	base_ec	base_ec	
nitrate reductase molybdenum cofactor assembly chaperone		narJ	respiratory nitrate reductase chaperone NarJ		CDS	Respiratory nitrate reductase delta chain	1.7.99.4		base_tigr	gs-sh	map	
respiratory nitrate reductase, gamma subunit	1.7.99.4	narI	respiratory nitrate reductase, gamma subunit	1.7.99.4	CDS	Respiratory nitrate reductase gamma chain	1.7.99.4		base_lit-s	base_ec	base_ec	
GTP-binding protein TypA/BipA		typA	GTP-binding protein TypA/BipA		CDS	GTP-binding protein TypA/BipA			base_lit-s	base_lit-s	base_lit-s	
putative monoacyl phosphatidylinositol tetramannoside-binding protein LpqW			Bacterial extracellular solute-binding proteins, family 5 Middle.		CDS	LpqW			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Polymorphic PE/PPE proteins C terminal./PPE family.		CDS	PPE family protein			base_one HP	base_one HP	pfam-sh	
PE family protein			PE family.		CDS	"(MTV005.05c), len: 100. similar to the N-terminal region of the M. tuberculosis PE family of proteinseg. TR:O05297 (EMBL:Z93777) MTCI364.07 (99 aa), fasta scores; opt: 209 z-score: 407.6 E(): 1.6e-15, 37.4% identityin 99 aa overlap. Also simlar to the N-terminus of M. tuberculosis TR:P77909 (EMBL:U76006) ESTERASE/LIPASE (TRIACYLGLYCEROL LIPASE) (437 aa), fasta scores; opt: 193z-score: 381.8 E(): 4.4e-14, 37.2% identity in 94 aa overlap. Contains a helix-turn-heix motiffrom aa 88-109(+2.76 SD)"	3.1.1.3		lit-s	0	0	
N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	3.5.1.103	mshB	N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase	3.5.1.103	CDS	N-acetyl-1-D-myo-inosityl-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase MshB			base_lit-s	gs-sh	map	
putative membrane protein			hypothetical protein		CDS	FIG00820431: hypothetical protein			base_one HP	0	base_one HP	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit	2.5.1.77	cofG	FO synthase subunit 1/FO synthase subunit 2	2.5.1.-,2.5.1.77, 2.5.1.77	CDS	"7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1 / 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2"			gs-sh	0	0	
putative rv1174c protein			hypothetical protein		CDS	LOW MOLECULAR WEIGHT T-CELL ANTIGEN TB8.4			base_one HP	0	base_one HP	
NADH:flavin oxidoreductase / NADH oxidase family protein			2,4-dienoyl-CoA reductase (EC 1.3.1.34)	1.3.1.34	CDS	"2,4-dienoyl-CoA reductase [NADPH]"	1.3.1.34		0	0	base_ec	
transcriptional regulator PadR-like family protein			transcriptional regulator, PadR family		CDS	"Transcriptional regulator, PadR family"			pfam-sh	pfam-sh	lit-s	
ferredoxin		fdxA	Ferredoxin		CDS	"4Fe-4S ferredoxin, iron-sulfur binding"			lit-s	orth	orth	
succinyldiaminopimelate transaminase	2.6.1.17	dapC	succinyldiaminopimelate aminotransferase apoenzyme	2.6.1.17	CDS	"N-succinyl-L,L-diaminopimelate aminotransferase alternative"	2.6.1.17		base_tigr	base_ec	base_ec	
helicase conserved C-terminal domain protein			DNA or RNA helicases of superfamily II		CDS	DNA or RNA helicases of superfamily II			0	0	base_lit-s	
beta-ketoacyl synthase, C-terminal domain protein			Beta-ketoacyl synthase, N-terminal domain./Beta-ketoacyl synthase, C-terminal domain.		CDS	Polyketide synthase			tf_idf	0	0	
mycocerosic acid synthase	2.3.1.111	mas	KR domain./Alcohol dehydrogenase GroES-like domain./Acyl transferase domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	Polyketide synthase			gs-sh	0	0	
trehalose-2-sulfate acyltransferase papA2	2.3.1.-	papA2	Condensation domain.		CDS	POSSIBLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA2			gs-sh	0	0	
membrane transport protein mmpL8		mmpL8	Transport protein		CDS	"membrane protein, MmpL family, putative"			gs-sh	map	orth	
PE-PPE domain protein			PE-PPE domain.		CDS	POSSIBLE EXPORTED PROTEIN			lit-s	0	0	
putative fatty-acid--CoA ligase fadD21			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		0	0	0	
pucR C-terminal helix-turn-helix domain protein			Regulator of polyketide synthase expression		CDS	Regulator of polyketide synthase expression			gs-sh	map	base_lit-s	
1-pyrroline-5-carboxylate dehydrogenase	1.5.1.12	pruA	delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)	1.5.1.12	CDS	Delta-1-pyrroline-5-carboxylate dehydrogenase	1.5.1.12		base_tigr	base_ec	base_ec	
proline dehydrogenase family protein			L-proline dehydrogenase (EC 1.5.99.8)	1.5.99.8	CDS	Proline dehydrogenase (Proline oxidase)	1.5.99.8		map	tf_idf	base_ec	
RNA polymerase sigma factor, sigma-70 family protein			RNA polymerase sigma factor, sigma-70 family		CDS	putative RNA polymerase sigma factor			base_tigr	tf_idf	tf_idf	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	"hydrolase, alpha/beta hydrolase fold family"			0	lit-s	0	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	putative RNA polymerase sigma factor			0	0	0	
alpha/beta hydrolase family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	FIG00820332: hypothetical protein			0	0	0	
putative fatty acid synthase			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		0	0	0	
pucR C-terminal helix-turn-helix domain protein			Regulator of polyketide synthase expression		CDS	Regulator of polyketide synthase expression			gs-sh	map	base_lit-s	
conserved hypothetical protein						FIG00822167: hypothetical protein			base_one HP	base_one HP	base_one miss	
hypothetical protein									base_one HP	base_one HP	base_both miss	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
putative ESAT-6-like protein 7			WXG100 family type VII secretion target		CDS	ESAT-6-like protein EsxK			0	0	0	
putative ESAT-6-like protein 6			Proteins of 100 residues with WXG.		CDS	ESAT-6-like protein EsxL			0	0	0	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	2.3.1.117	dapD	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	2.3.1.117	CDS	"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase"	2.3.1.117		base_lit-s	base_ec	base_ec	
H+ symporter family protein			metabolite-proton symporter		CDS	Permeases of the major facilitator superfamily			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820207: hypothetical protein			lit-s	base_one HP	base_one HP	
succinyl-diaminopimelate desuccinylase	3.5.1.18	dapE	succinyldiaminopimelate desuccinylase (EC 3.5.1.18)	3.5.1.18	CDS	"N-succinyl-L,L-diaminopimelate desuccinylase"	3.5.1.18		base_tigr	base_ec	base_ec	
AAA ATPase domain protein			AAA ATPase domain.		CDS	ATPase			lit-s	0	0	
conserved hypothetical protein			TIGR00730 family protein		CDS	Lysine decarboxylase family			base_one HP	base_one HP	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Acetoacetyl-CoA synthetase / Long-chain-fatty-acid--CoA ligase	6.2.1.16, 6.2.1.3		pfam-sh	0	0	
inactive dihydropteroate synthase 2 domain protein	2.5.1.15	folP2	hypothetical protein		CDS	FIG00822783: hypothetical protein			base_one HP	0	base_one HP	
dihydropteroate synthase	2.5.1.15	folP	Dihydropteroate synthase (EC 2.5.1.15)	2.5.1.15	CDS	Non functional Dihydropteroate synthase 2			base_tigr	0	0	
conserved hypothetical protein			Glycosyltransferases involved in cell wall biogenesis	2.4.1.-	CDS	Glycosyltransferases involved in cell wall biogenesis			base_one HP	base_one HP	base_lit-s	
divIVA domain protein			DivIVA domain		CDS	FIG01000442: hypothetical protein			base_tigr	0	0	
DNA-3-methyladenine glycosylase I family protein	3.2.2.20	tag	DNA-3-methyladenine glycosylase I (EC 3.2.2.20)	3.2.2.20	CDS	DNA-3-methyladenine glycosylase	3.2.2.20		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3117).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
glycogen synthase, Corynebacterium family protein		glgA	glycogen synthase (ADP-glucose)	2.4.1.21	CDS	"Predicted glycogen synthase, ADP-glucose transglucosylase, Actinobacterial type"	2.4.1.21		base_tigr	map	base_ec	
glucose-1-phosphate adenylyltransferase	2.7.7.27	glgC	glucose-1-phosphate adenylyltransferase	2.7.7.27	CDS	Glucose-1-phosphate adenylyltransferase	2.7.7.27		base_lit-s	base_ec	base_ec	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
hydrolase CocE/NonD family protein			putative hydrolase, CocE/NonD family		CDS	Cocaine esterase	3.1.1.-		base_tigr	0	0	
ergosterol biosynthesis ERG4/ERG24 family protein			Putative protein-S-isoprenylcysteine methyltransferase		CDS	hypothetical protein			0	base_one HP	base_one HP	
ABC-2 transporter family protein			Putative exporter of polyketide antibiotics		CDS	PROBABLE TETRONASIN-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER			0	0	orth	
ABC transporter family protein			ABC-type multidrug transport system, ATPase component		CDS	"ABC-type multidrug transport system, ATPase component"			0	0	lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
putative O-methyltransferase MSMEG_5073			Predicted O-methyltransferase		CDS	PROBABLE METHYLTRANSFERASE	2.1.1.-		0	0	0	
RNA polymerase sigma factor, sigma-70 family protein			RNA polymerase, sigma 29 subunit, SigE		CDS	"RNA polymerase sigma-70 factor, ECF subfamily"			base_tigr	tf_idf	map	
conserved hypothetical protein						FIG00826611: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	conserved hypothetical protein			lit-s	base_lit-s	lit-s	
trypsin family protein			Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	serine protease			0	0	0	
twin arginine-targeting protein translocase TatB		tatB	twin arginine-targeting protein translocase TatB		CDS	Twin-arginine translocation protein TatB			base_lit-s	gs-sh	orth	
HAD hydrolase, IA, variant 1 family protein			Predicted sugar phosphatases of the HAD superfamily		CDS	"HAD-superfamily subfamily IIA hydrolase, hypothetical 2"			pfam-sh	pfam-sh	pfam-sh	
bacterial PH domain protein			Predicted membrane protein		CDS	"transmembrane protein, distant homology with ydbT"			0	0	gs-sh	
bacterial PH domain protein			Uncharacterized conserved protein		CDS	"transmembrane protein, distant homology with ydbS"			0	0	gs-sh	
putative lipoprotein lpqX			hypothetical protein		CDS	PUTATIVE LIPOPROTEIN LPQX			base_one HP	lit-s	base_one HP	
antitoxin Phd_YefM, type II toxin-antitoxin system family protein						FIG00820789: hypothetical protein			base_one miss	0	base_one miss	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	Mrp protein homolog			gs-sh	0	0	
transglycosylase SLT domain protein			Membrane-bound lytic murein transglycosylase B		CDS	POSSIBLE MEMBRANE PROTEIN			0	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	PROBABLE MEMBRANE PROTEIN			base_one HP	base_one HP	lit-s	
CBS domain protein			Mg/Co/Ni transporter MgtE (contains CBS domain)		CDS	Mg/Co/Ni transporter MgtE / CBS domain			0	0	pfam-sh	
conserved hypothetical protein			Domain of unknown function (DUF4190).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
putative transmembrane protein			hypothetical protein		CDS	FIG00945083: hypothetical protein			base_one HP	0	base_one HP	
bacterial extracellular solute-binding family protein			carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	"Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE"			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	"Maltose/maltodextrin ABC transporter, permease protein MalF"			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	SugB			0	0	0	
ABC transporter family protein			carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	SugC			0	0	0	
magnesium and cobalt transport protein CorA		corA	magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)		CDS	Magnesium and cobalt transport protein CorA			base_tigr	lit-s	gs-sh	
malate dehydrogenase family protein	1.1.1.-		malate dehydrogenase (NAD) (EC 1.1.1.37)	1.1.1.37	CDS	Malate dehydrogenase	1.1.1.37		base_tigr	lit-s	base_ec	
antitoxin VapB33		vapB33	hypothetical protein		CDS	FIG00822111: hypothetical protein			base_one HP	0	base_one HP	
putative ribonuclease VapC33			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00822247: hypothetical protein			0	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
substrate binding domain of ABC-type glycine betaine transport system family protein			Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)		CDS	Substrate-binding region of ABC-type glycine betaine transport system			0	0	0	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	Short-chain type dehydrogenase/reductase			0	0	0	
toxin RelE	3.1.-.-	relE	Cytotoxic translational repressor of toxin-antitoxin stability system		CDS	RelE/StbE replicon stabilization toxin			gs-sh	gs-sh	gs-sh	
antitoxin RelB		relB	prevent-host-death family protein		CDS	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)			gs-sh	pfam-sh	gs-sh	
oxoglutarate dehydrogenase (succinyl-transferring), E1 component	1.2.4.2	sucA	2-oxoglutarate dehydrogenase E1 component	4.1.1.71,1.2.4.2	CDS	Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex / 2-oxoglutarate dehydrogenase E1 component	2.3.1.61, 1.2.4.2		base_tigr	base_ec-d	base_ec-d	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
recB nuclease, TM0106 family domain protein			RecB family nuclease, putative, TM0106 family		CDS	Superfamily I DNA and RNA helicases and helicase subunits			base_tigr	0	0	
			drug resistance transporter, EmrB/QacA subfamily		CDS				base_one miss	base_both miss	base_one miss	
lppP/LprE lipofamily protein			LppP/LprE lipoprotein.		CDS	Putative lipoprotein lprE precursor			gs-sh	gs-sh	gs-sh	
						FIG00820414: hypothetical protein			base_both miss	base_one miss	base_one miss	
helicase conserved C-terminal domain protein			ATP-dependent RNA helicase CsdA	3.6.4.13,5.99.1.-	CDS	Cold-shock DEAD-box protein A			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	Possible oxidoreductase subunit			gs-sh	0	0	
acyltransferase family protein			Predicted acyltransferases		CDS	Acyltransferase			0	lit-s	0	
putative cytochrome P450 130			Cytochrome P450		CDS	Cytochrome P450 130			orth	lit-s	tf_idf	
FAD binding domain protein			FAD/FMN-containing dehydrogenases		CDS	"""Glycolate oxidase, subunit GlcD"""			0	0	0	
putative multidrug-efflux transporter Rv1258c/MT1297			Arabinose efflux permease		CDS	H+ antiporter integral membrane transport protein			0	0	0	
uracil DNA glycosylase superfamily protein			Uracil-DNA glycosylase		CDS	hypothetical protein			0	base_one HP	base_one HP	
FAD binding domain protein			2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases		CDS	Oxidoreductase			0	0	0	
deazaflavin-dependent oxidoreductase, nitroreductase family protein			deazaflavin-dependent nitroreductase family protein		CDS	FIG029194: hypothetical protein			base_tigr	0	0	
HIT family protein			Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)	3.6.1.17		pfam-sh	0	0	
amidase family protein			Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	Amidase	3.5.1.4		map	lit-s	base_ec	
pH-sensitive adenylate cyclase Rv1264	4.6.1.1		Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	Adenylate cyclase	4.6.1.1		base_ec	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820425: hypothetical protein			lit-s	base_one HP	base_one HP	
putative serine/threonine-protein kinase pknH			Serine/threonine protein kinase	2.7.11.1	CDS	Serine/threonine protein kinase	2.7.11.1		gs-sh	map	base_lit-s	
putative regulatory protein embR			DNA-binding transcriptional activator of the SARP family		CDS	Transcriptional regulatory protein EmbR			gs-sh	0	0	
hypothetical protein						FIG00821408: hypothetical protein			base_one HP	base_one HP	base_one miss	
peptidase_C39 like family protein			Peptidase_C39 like family.		CDS	FIG00820366: hypothetical protein			lit-s	0	0	
protein Rv1269c/MT1307			Domain of unknown function (DUF4189).		CDS	Possible membrane protein			0	0	0	
putative lipoprotein lprA			Protein of unknown function (DUF1396).		CDS	Lipoprotein LprA			gs-sh	lit-s	0	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	FIG00820785: hypothetical protein			base_one HP	base_one HP	lit-s	
ABC transporter family protein			ABC-type multidrug transport system, ATPase and permease components		CDS	Lipid A export ATP-binding/permease protein MsbA			0	0	0	
ABC transporter family protein			ABC-type multidrug transport system, ATPase and permease components		CDS	ABC transporter ATP-binding protein			0	tf_idf	0	
conserved hypothetical protein			Protein of unknown function (DUF3558).		CDS	Lipoprotein LprB			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF3558).		CDS	Putative lipoprotein LprC precursor			base_one HP	base_one HP	0	
histidine phosphatase super family protein			Phosphohistidine phosphatase SixA	3.1.3.-	CDS	Phosphohistidine phosphatase SixA			0	0	base_lit-s	
calcineurin-like phosphoesterase family protein			DNA repair exonuclease		CDS	DNA double-strand break repair protein Mre11			0	0	0	
AAA domain protein			AAA domain.		CDS	DNA double-strand break repair Rad50 ATPase			lit-s	0	0	
GMC oxidoreductase family protein			Choline dehydrogenase and related flavoproteins		CDS	Choline dehydrogenase	1.1.99.1		0	0	0	
bacterial extracellular solute-binding s, 5 Middle family protein			ABC-type dipeptide transport system, periplasmic component		CDS	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"			0	0	gs-sh	
nickel import ATP-binding protein NikE	3.6.3.24	nikE	oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain		CDS	"Probable ABC transport protein, ATP-binding component"			gs-sh	0	0	
binding--dependent transport system inner membrane component family protein			ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)			0	0	gs-sh	
carbonic anhydrase family protein			Carbonic anhydrase	4.2.1.1	CDS	Carbonic anhydrase	4.2.1.1		lit-s	lit-s	base_lit-s	
sulfate adenylyltransferase, small subunit	2.7.7.4	cysD	sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)	2.7.7.4	CDS	Sulfate adenylyltransferase subunit 2	2.7.7.4		base_tigr	base_ec	base_ec	
bifunctional enzyme CysN/CysC	2.7.1.25	cysNC	adenylylsulfate kinase/sulfate adenylyltransferase subunit 1	2.7.7.4, 2.7.1.25,2.7.1.25, 2.7.7.4	CDS	Sulfate adenylyltransferase subunit 1 / Adenylylsulfate kinase	2.7.7.4, 2.7.1.25		base_ec-d	base_ec-d	base_ec-d	
rrf2 family protein			transcriptional regulator, BadM/Rrf2 family		CDS	"Predicted transcriptional regulator of sulfate adenylyltransferase, Rrf2 family"			base_tigr	map	pfam-sh	
phage Tail Protein X family protein			Predicted esterase		CDS	Putative esterase			0	0	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820436: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Predicted membrane protein		CDS	FIG00820284: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	"Mb1322, -, len: 104 aa. Equivalent to Rv1290A, len: 104 aa, from Mycobacterium tuberculosis strain H37Rv, (100% identity in 104 aa overlap). Hypothetical unknown protein, equivalent to AAK45590 from Mycobacterium tuberculosis strain CDC1551 (122 aa) but shorter 18 aa."			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	FIG00823516: hypothetical protein			base_one HP	base_one HP	lit-s	
arginine--tRNA ligase	6.1.1.19	argS	arginyl-tRNA synthetase (EC 6.1.1.19)	6.1.1.19	CDS	Arginyl-tRNA synthetase	6.1.1.19		base_tigr	base_ec	base_ec	
diaminopimelate decarboxylase	4.1.1.20	lysA	diaminopimelate decarboxylase (EC 4.1.1.20)	4.1.1.20	CDS	Diaminopimelate decarboxylase	4.1.1.20		base_tigr	base_ec	base_ec	
homoserine dehydrogenase	1.1.1.3	hom	homoserine dehydrogenase (EC 1.1.1.3)	1.1.1.3	CDS	Homoserine dehydrogenase	1.1.1.3		base_ec	base_ec	base_ec	
threonine synthase	4.2.3.1	thrC	L-threonine synthase (EC 4.2.3.1)	4.2.3.1	CDS	Threonine synthase	4.2.3.1		base_tigr	base_ec	base_ec	
hypothetical protein			hypothetical protein		CDS	hypothetical protein			base_lit-s	base_lit-s	base_lit-s	
homoserine kinase	2.7.1.39	thrB	homoserine kinase (EC 2.7.1.39)	2.7.1.39	CDS	Homoserine kinase	2.7.1.39		base_tigr	base_ec	base_ec	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein						unknown			base_one HP	base_one HP	base_one miss	
transcription termination factor Rho	3.6.4.-	rho	transcription termination factor Rho		CDS	Transcription termination factor Rho			base_lit-s	lit-s	lit-s	
ribosomal protein L31		rpmE	LSU ribosomal protein L31P		CDS	"LSU ribosomal protein L31p @ LSU ribosomal protein L31p, zinc-dependent"			base_tigr	0	0	
peptide chain release factor 1		prfA	bacterial peptide chain release factor 1 (bRF-1)		CDS	Peptide chain release factor 1			base_tigr	lit-s	tf_idf	
methyltransferase, HemK family protein			HemK family putative methylases	2.1.1.-	CDS	"Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2"			base_tigr	0	0	
telomere recombination family protein			translation factor SUA5		CDS	TsaC protein (YrdC domain) required for threonylcarbamoyladenosine t(6)A37 modification in tRNA			0	0	gs-sh	
glycosyl transferase 4 family protein			UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase		CDS	Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase	2.7.8.-		0	0	0	
ATP synthase I chain family protein			ATP synthase I chain.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
ATP synthase F0, A subunit	3.6.3.14	atpB	ATP synthase F0 subcomplex A subunit	3.6.3.14	CDS	ATP synthase A chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F0, C subunit	3.6.3.14	atpE	ATP synthase F0 subcomplex C subunit	3.6.3.14	CDS	ATP synthase C chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase B/B' CF family protein			F0F1-type ATP synthase, subunit b	3.6.3.14	CDS	ATP synthase B chain	3.6.3.14		0	0	base_ec	
ATP synthase F1, delta subunit	3.6.3.14	atpH	ATP synthase F1 subcomplex delta subunit	3.6.3.14	CDS	ATP synthase B' chain / ATP synthase delta chain	3.6.3.14, 3.6.3.14		base_ec	base_ec-d	base_ec-d	
ATP synthase F1, alpha subunit	3.6.3.14	atpA	ATP synthase F1 subcomplex alpha subunit	3.6.3.14	CDS	ATP synthase alpha chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F1, gamma subunit	3.6.3.14	atpG	ATP synthase F1 subcomplex gamma subunit	3.6.3.14	CDS	ATP synthase gamma chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F1, beta subunit	3.6.3.14	atpD	ATP synthase, F1 beta subunit	3.6.3.14	CDS	ATP synthase beta chain	3.6.3.14		base_tigr	base_ec	base_ec	
ATP synthase F1, epsilon subunit	3.6.3.14	atpC	ATP synthase, F1 epsilon subunit (delta in mitochondria)	3.6.3.14	CDS	ATP synthase epsilon chain	3.6.3.14		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2550).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
cob(I)yrinic acid a,c-diamide adenosyltransferase	2.5.1.17		ATP:cob(I)alamin adenosyltransferase		CDS	Cob(I)alamin adenosyltransferase PduO	2.5.1.17		orth	base_ec	map	
UDP-N-acetylglucosamine 1-carboxyvinyltransferase	2.5.1.7	murA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7)	2.5.1.7	CDS	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	2.5.1.7		base_tigr	base_lit-s	base_ec	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
									base_both miss	base_both miss	base_both miss	
methylated-DNA-[]-cysteine S-methyltransferase family protein	2.1.1.63		O-6-methylguanine DNA methyltransferase	2.1.1.63	CDS	Methylated-DNA--protein-cysteine methyltransferase	2.1.1.63		base_tigr	base_ec	base_ec	
alkA N-terminal domain protein			DNA-3-methyladenine glycosylase II (EC 3.2.2.21)	3.2.2.21	CDS	Methylated-DNA--protein-cysteine methyltransferase	2.1.1.63		gs-sh	0	base_ec-d	
HAMP domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	Adenylate cyclase	4.6.1.1		pfam-sh	map	base_ec	
adenylate and Guanylate cyclase catalytic domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	Adenylate cyclase	4.6.1.1		0	0	base_ec	
HAMP domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	Adenylate cyclase	4.6.1.1		pfam-sh	map	base_ec	
conserved hypothetical protein			Predicted nuclease of the RecB family		CDS	FIG00996186: hypothetical protein			base_one HP	base_one HP	0	
methylmalonyl-CoA epimerase	5.1.99.1	mce	methylmalonyl-CoA epimerase	5.1.99.1	CDS	Methylmalonyl-CoA epimerase; Ethylmalonyl-CoA epimerase	5.1.99.1		base_lit-s	base_ec	base_ec	
putative acetyl-CoA acetyltransferase			acetyl-CoA acetyltransferases	2.3.1.9	CDS	3-ketoacyl-CoA thiolase @ Acetyl-CoA acetyltransferase	2.3.1.16, 2.3.1.9		0	0	base_ec-d	
thioredoxin family protein			Thioredoxin domain-containing protein		CDS	COG3118: Thioredoxin domain-containing protein EC-YbbN			lit-s	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
1,4-alpha-glucan branching enzyme	2.4.1.18	glgB	alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase	2.4.1.18	CDS	"1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type"	2.4.1.18		base_tigr	base_ec	base_ec	
putative glucanase GlgE			Glycosidases		CDS	Putative glucanase glgE	3.2.1.-		map	lit-s	gs-sh	
alpha-glucan phosphorylases family protein	2.4.1.1	glgP	alpha-glucan phosphorylases	2.4.1.1	CDS	Glycogen phosphorylase	2.4.1.1		base_tigr	base_ec	base_ec	
DEAD/DEAH box helicase family protein			Rad3-related DNA helicases	3.6.4.12	CDS	DinG family ATP-dependent helicase YoaA			0	0	gs-sh	
nicotinate phosphoribosyltransferase family protein			putative nicotinate phosphoribosyltransferase	2.4.2.11	CDS	Nicotinate phosphoribosyltransferase	2.4.2.11		lit-s	lit-s	base_ec	
ATP-dependent Clp protease adaptor ClpS family protein			Uncharacterized conserved protein		CDS	ATP-dependent Clp protease adaptor protein ClpS			0	lit-s	0	
conserved hypothetical protein			Domain of unknown function (DUF2017).		CDS	Transcriptional regulatory protein			base_one HP	base_one HP	0	
peptidase S58 family protein			L-aminopeptidase/D-esterase		CDS	possible hydrolase			0	0	0	
cysO-cysteine peptidase		mec	Predicted metal-dependent protease of the PAD1/JAB1 superfamily		CDS	Mec+			gs-sh	0	0	
sulfur carrier protein CysO		cysO	molybdopterin synthase subunit MoaD	2.8.1.12	CDS	9.5 kDa culture filtrate antigen Cfp10A			gs-sh	0	0	
O-phosphoserine sulfhydrylase		cysM	cysteine synthase (EC 2.5.1.47)	2.5.1.47	CDS	Cysteine synthase B	2.5.1.47		gs-sh	gs-sh	base_ec	
rhomboid family protein			Uncharacterized membrane protein (homolog of Drosophila rhomboid)		CDS	Rhomboid membrane family protein			0	lit-s	0	
glutamate racemase	5.1.1.3	murI	glutamate racemase (EC 5.1.1.3)	5.1.1.3	CDS	Glutamate racemase	5.1.1.3		base_tigr	base_ec	base_ec	
beta-lactamase superfamily domain protein			Metal-dependent hydrolases of the beta-lactamase superfamily III		CDS	Metal-dependent hydrolases of the beta-lactamase superfamily III			0	0	base_lit-s	
ribonuclease PH	2.7.7.56	rph	RNAse PH (EC 2.7.7.56)	2.7.7.56	CDS	Ribonuclease PH	2.7.7.56		base_tigr	base_ec	base_ec	
integral membrane domain protein			integral membrane protein		CDS	CONSERVED MEMBRANE PROTEIN			base_tigr	0	0	
non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.-	rdgB	non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family	3.6.1.19	CDS	"Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific)"	3.6.1.15		base_lit-s	0	base_ec-d	
conserved hypothetical protein			Glucitol operon activator		CDS	Lipoprotein LprD			base_one HP	base_one HP	0	
acyl carrier protein MbtL		mbtL	Acyl carrier protein		CDS	Acyl carrier protein MbtL			orth	lit-s	orth	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.20	CDS	acyl-CoA synthase			pfam-sh	0	0	
lysine N-acyltransferase mbtK	2.3.1.-	mbtK	Acetyltransferases, including N-acetylases of ribosomal proteins		CDS	Lysine N-acyltransferase mbtK (N-acyltransferase mbtK) (Mycobactin synthetase protein K)	2.3.1.-		gs-sh	gs-sh	gs-sh	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Isovaleryl-CoA dehydrogenase	1.3.99.10		0	0	0	
iron import ATP-binding/permease protein IrtA	3.6.3.-	irtA	ABC-type multidrug transport system, ATPase and permease components	3.6.3.-	CDS	ABC transporter ATP-binding protein			0	0	0	
iron import ATP-binding/permease protein IrtB	3.6.3.-	irtB	ABC-type multidrug transport system, ATPase and permease components	3.6.3.-	CDS	ABC transporter ATP-binding protein			0	0	0	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		0	0	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821860: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00831546: hypothetical protein			lit-s	base_one HP	base_one HP	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
diguanylate cyclase domain protein			diguanylate cyclase/phosphodiesterase with GAF sensor		CDS	Sensory box/GGDEF family protein			base_tigr	0	0	
nitroreductase family protein			Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	Molybdopterin biosynthesis protein MoeY			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822688: hypothetical protein			lit-s	base_one HP	base_one HP	
EAL domain protein			FOG: EAL domain		CDS	Sensory box/GGDEF family protein			lit-s	orth	map	
bacterial regulatory s, luxR family protein			Predicted ATPase		CDS	"Adenylyl cyclase class-3/4/guanylyl cyclase / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein / Transcriptional regulator, LuxR family"			gs-sh	0	0	
conserved hypothetical protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	Adenylyl cyclase class-3/4/guanylyl cyclase			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821517: hypothetical protein			lit-s	base_one HP	base_one HP	
putative F420-dependent oxidoreductase, MSMEG_2256 family protein			probable F420-dependent oxidoreductase, MSMEG_2256 family		CDS	Oxidoreductase			base_tigr	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			PAS domain S-box		CDS	"Serine phosphatase RsbU, regulator of sigma subunit"			base_one HP	base_one HP	gs-sh	
anti-anti-sigma factor family protein			anti-anti-sigma factor		CDS	Anti-sigma factor antagonist			base_tigr	0	0	
region found in RelA / SpoT s family protein			Uncharacterized protein conserved in bacteria		CDS	GTP pyrophosphokinase	2.7.6.5		gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00824301: hypothetical protein			lit-s	base_one HP	base_one HP	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Beta-lactamase class C and other penicillin binding proteins			0	0	base_lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1396).		CDS	Lipoprotein LprF			base_one HP	base_one HP	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
fatty acid desaturase family protein			Fatty acid desaturase		CDS	Desaturase-related protein			lit-s	0	0	
alpha-pyrone synthesis polyketide synthase-like Pks18	2.3.1.-	pks18	Predicted naringenin-chalcone synthase		CDS	Chalcone synthase	2.3.1.74		gs-sh	0	0	
glycolipid sulfotransferase Rv1373	2.8.2.-		Sulfotransferase domain.		CDS	Glycolipid sulfotransferase			map	orth	tf_idf	
conserved hypothetical protein			uncharacterized domain		CDS	FIG00820054: hypothetical protein			base_one HP	base_one HP	lit-s	
			Methyltransferase domain.		CDS				base_one miss	base_both miss	base_one miss	
tfuA-like family protein			Uncharacterized conserved protein		CDS	FIG029924: hypothetical protein			gs-sh	0	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	HNH nuclease			base_one HP	base_one HP	0	
bifunctional protein pyrR	2.4.2.9	pyrR	Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase	2.4.2.9	CDS	Uracil phosphoribosyltransferase / Pyrimidine operon regulatory protein PyrR	2.4.2.9		base_ec	base_ec	base_ec	
aspartate carbamoyltransferase	2.1.3.2	pyrB	aspartate carbamoyltransferase (EC 2.1.3.2)	2.1.3.2	CDS	Aspartate carbamoyltransferase	2.1.3.2		base_tigr	base_ec	base_ec	
dihydroorotase, multifunctional complex type domain protein	3.5.2.3	pyrC	dihydroorotase (EC 3.5.2.3)	3.5.2.3	CDS	Dihydroorotase	3.5.2.3		base_tigr	base_ec	base_ec	
putative eXPORT/MEMBRANE PROTEIN			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
carbamoyl-phosphate synthase, small subunit	6.3.5.5	carA	carbamoyl-phosphate synthase small subunit	6.3.5.5	CDS	Carbamoyl-phosphate synthase small chain	6.3.5.5		base_tigr	base_ec	base_ec	
carbamoyl-phosphate synthase, large subunit	6.3.5.5	carB	carbamoyl-phosphate synthase large subunit	6.3.5.5	CDS	Carbamoyl-phosphate synthase large chain	6.3.5.5		base_tigr	base_ec	base_ec	
orotidine 5'-phosphate decarboxylase	4.1.1.23	pyrF	orotidine-5'-phosphate decarboxylase (EC 4.1.1.23)	4.1.1.23	CDS	Orotidine 5'-phosphate decarboxylase	4.1.1.23		base_tigr	base_ec	base_ec	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
putative predicted protein									base_one miss	base_one miss	base_both miss	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
putative integration host factor			hypothetical protein		CDS	integration host factor			base_one HP	lit-s	base_one HP	
guanylate kinase	2.7.4.8	gmk	guanylate kinase (EC 2.7.4.8)	2.7.4.8	CDS	Guanylate kinase	2.7.4.8		base_tigr	base_ec	base_ec	
DNA-directed RNA polymerase, omega subunit	2.7.7.6	rpoZ	DNA-directed RNA polymerase, omega subunit	2.7.7.6	CDS	DNA-directed RNA polymerase omega subunit	2.7.7.6		base_lit-s	base_ec	base_ec	
phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase	4.1.1.36	coaBC	Phosphopantothenate-cysteine ligase/Phosphopantothenoylcysteine decarboxylase	4.1.1.36, 6.3.2.5,6.3.2.5, 4.1.1.36	CDS	Phosphopantothenoylcysteine decarboxylase / Phosphopantothenoylcysteine synthetase	4.1.1.36, 6.3.2.5		base_tigr	base_ec-d	base_ec-d	
methionine adenosyltransferase	2.5.1.6	metK	methionine adenosyltransferase (EC 2.5.1.6)	2.5.1.6	CDS	S-adenosylmethionine synthetase	2.5.1.6		base_tigr	base_ec	base_ec	
pyridine nucleotide-disulfide oxidoreductase family protein			Predicted flavoprotein involved in K+ transport	1.14.13.22	CDS	Cyclohexanone monooxygenase	1.14.13.22		0	0	base_ec	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 132			lit-s	tf_idf	tf_idf	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator, AraC family"			pfam-sh	pfam-sh	lit-s	
PE family protein			PE family.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
putative ribonuclease VapC19			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821201: hypothetical protein			0	0	0	
ribbon-helix-helix , copG family protein			Ribbon-helix-helix protein, copG family.		CDS	"""Transcriptional regulator, CopG family"""			lit-s	gs-sh	gs-sh	
hydrolase			Esterase/lipase		CDS	Esterase/lipase			0	0	base_lit-s	
hydrolase			Esterase/lipase		CDS	Esterase/lipase			0	0	base_lit-s	
yhhN-like family protein			Predicted membrane protein		CDS	YhhN family membrane protein			gs-sh	0	0	
putative primosomal protein N'			replication restart DNA helicase PriA	3.6.4.-	CDS	Helicase PriA essential for oriC/DnaA-independent DNA replication			0	0	gs-sh	
ubiE/COQ5 methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase			gs-sh	gs-sh	map	
marR family protein			Transcriptional regulators		CDS	"Transcriptional regulator, MarR family"			gs-sh	gs-sh	gs-sh	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase			0	lit-s	0	
methionyl-tRNA formyltransferase	2.1.2.9	fmt	methionyl-tRNA formyltransferase (EC 2.1.2.9)	2.1.2.9	CDS	Methionyl-tRNA formyltransferase	2.1.2.9		base_tigr	base_ec	base_ec	
nusB family protein			tRNA and rRNA cytosine-C5-methylases	2.1.1.176	CDS	16S rRNA (cytosine(967)-C(5))-methyltransferase	2.1.1.176		gs-sh	gs-sh	base_ec	
ribulose-phosphate 3-epimerase	5.1.3.1	rpe	ribulose-5-phosphate 3-epimerase (EC 5.1.3.1)	5.1.3.1	CDS	Ribulose-phosphate 3-epimerase	5.1.3.1		base_tigr	base_ec	base_ec	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	EmrB/QacA family drug resistance transporter			0	0	0	
riboflavin biosynthesis protein RibD	3.5.4.26	ribD	riboflavin biosynthesis protein RibD	1.1.1.193, 3.5.4.26	CDS	Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase	3.5.4.26, 1.1.1.193		base_lit-s	base_ec-d	base_ec-d	
lipoprotein lprG		lprG	Protein of unknown function (DUF1396).		CDS	Lipoprotein LprG			gs-sh	lit-s	0	
riboflavin synthase, alpha subunit	2.5.1.9	ribE	riboflavin synthase alpha chain (EC 2.5.1.9)	2.5.1.9	CDS	Riboflavin synthase eubacterial/eukaryotic	2.5.1.9		base_tigr	base_ec	base_ec	
alanine racemase, N-terminal domain protein			Predicted amino acid aldolase or racemase		CDS	METAL-ACTIVATED PYRIDOXAL ENZYME			0	0	0	
putative serine dehydratase domain protein			Predicted amino acid aldolase or racemase		CDS	METAL-ACTIVATED PYRIDOXAL ENZYME			0	0	0	
GTP cyclohydrolase II	3.5.4.25	ribA	GTP cyclohydrolase II (EC 3.5.4.25)/3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12)	3.5.4.25, 4.1.99.12	CDS	"3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II"	4.1.99.12, 3.5.4.25		base_ec-d	base_ec-d	base_ec-d	
6,7-dimethyl-8-ribityllumazine synthase	6.3.3.-	ribH	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78)	2.5.1.78	CDS	"6,7-dimethyl-8-ribityllumazine synthase"	2.5.1.78		base_tigr	lit-s	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2581).		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	base_one HP	gs-sh	
pknH-like extracellular domain protein			PknH-like extracellular domain.		CDS	Lipoprotein LprH			lit-s	0	0	
ricin-type beta-trefoil lectin domain protein			Ricin-type beta-trefoil lectin domain.		CDS	FIG00821636: hypothetical protein			lit-s	0	0	
excinuclease ABC subunit C	3.1.25.-	uvrC	Excinuclease ABC subunit C		CDS	Excinuclease ABC subunit C			base_tigr	lit-s	base_lit-s	
P-loop ATPase family protein			Predicted P-loop-containing kinase		CDS	FIG000506: Predicted P-loop-containing kinase			0	0	lit-s	
conserved hypothetical family protein			conserved hypothetical protein, cofD-related		CDS	hypothetical protein			base_tigr	base_one HP	base_one HP	
putative sporulation transcription regulator whiA			Uncharacterized protein conserved in bacteria		CDS	FIG001886: Cytoplasmic hypothetical protein			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820381: hypothetical protein			lit-s	base_one HP	base_one HP	
acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			base_tigr	0	0	
alpha/beta hydrolase fold family protein			Esterase/lipase		CDS	Lipase	3.1.1.3		0	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
diacylglycerol acyltransferase family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		0	0	0	
pucR C-terminal helix-turn-helix domain protein			Regulator of polyketide synthase expression		CDS	"""Putative transcriptional regulator, PucR family"""			gs-sh	0	0	
PE family protein			PE-PPE domain./PE family.		CDS	PE family protein			0	base_lit-s	0	
conserved hypothetical protein			Transmembrane protein of unknown function (DUF3556).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
hypothetical protein						FIG00823623: hypothetical protein			base_one HP	base_one HP	base_one miss	
FAD binding domain protein			Phytoene dehydrogenase and related proteins		CDS	Phytoene dehydrogenase and related proteins			0	0	base_lit-s	
L,D-transpeptidase catalytic domain protein			Uncharacterized protein conserved in bacteria		CDS	FIG00826591: hypothetical protein			0	0	lit-s	
putative conserved glycine, proline and valine-rich secreted protein						"""Probable conserved Proline, Glycine, Valine-rich secreted protein"""			base_one miss	0	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
glyceraldehyde-3-phosphate dehydrogenase, type I	1.2.1.-	gap	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (EC 1.2.1.12)	1.2.1.12	CDS	NAD-dependent glyceraldehyde-3-phosphate dehydrogenase	1.2.1.12		base_tigr	gs-sh	base_ec	
phosphoglycerate kinase	2.7.2.3	pgk	phosphoglycerate kinase (EC 2.7.2.3)	2.7.2.3	CDS	Phosphoglycerate kinase	2.7.2.3		base_ec	base_ec	base_ec	
triose-phosphate isomerase	5.3.1.1	tpiA	triosephosphate isomerase (EC 5.3.1.1)	5.3.1.1	CDS	Triosephosphate isomerase	5.3.1.1		base_tigr	base_ec	base_ec	
hypothetical protein			hypothetical protein		CDS	Transcriptional regulatory protein			base_lit-s	base_one HP	base_one HP	
snoaL-like polyketide cyclase family protein			SnoaL-like domain.		CDS	FIG00822160: hypothetical protein			0	0	0	
hypothetical protein						FIG00820520: hypothetical protein			base_one HP	base_one HP	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
preprotein translocase, SecG subunit		secG	protein translocase, SecG subunit		CDS	Preprotein translocase subunit SecG (TC 3.A.5.1.1)			base_tigr	lit-s	pfam-sh	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
molybdopterin guanine dinucleotide-containing S/N-oxide reductases family protein			molybdopterin guanine dinucleotide-containing S/N-oxide reductases	1.-	CDS	Biotin sulfoxide reductase	1.-.-.-		base_tigr	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Uncharacterized conserved protein		CDS	FIG00824621: hypothetical protein			0	0	lit-s	
hypothetical protein			hypothetical protein		CDS	FIG00820605: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Uncharacterised protein family (UPF0184).		CDS	FIG00820198: hypothetical protein			base_one HP	base_one HP	lit-s	
6-phosphogluconolactonase	3.1.1.31	pgl	6-phosphogluconolactonase (EC 3.1.1.31)	3.1.1.31	CDS	"6-phosphogluconolactonase, eukaryotic type"	3.1.1.31		base_ec	base_ec	base_ec	
glucose-6-phosphate dehydrogenase assembly protein OpcA		opcA	opcA protein		CDS	"OpcA, an allosteric effector of glucose-6-phosphate dehydrogenase, actinobacterial"			base_tigr	pfam-sh	map	
glucose-6-phosphate dehydrogenase	1.1.1.49	zwf	glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)	1.1.1.49	CDS	Glucose-6-phosphate 1-dehydrogenase	1.1.1.49		base_tigr	base_ec	base_ec	
transaldolase	2.2.1.2	tal	transaldolase (EC 2.2.1.2)	2.2.1.2	CDS	Transaldolase	2.2.1.2		base_tigr	base_ec	base_ec	
transketolase	2.2.1.1	tkt	transketolase (EC 2.2.1.1)	2.2.1.1	CDS	Transketolase	2.2.1.1		base_tigr	base_ec	base_ec	
putative domain protein						FIG00825039: hypothetical protein			base_one miss	lit-s	base_one miss	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
protoheme IX farnesyltransferase	2.5.1.-	cyoE	protoheme IX farnesyltransferase	2.5.1.-	CDS	"Heme O synthase, protoheme IX farnesyltransferase COX10-CtaB"	2.5.1.-		base_lit-s	0	0	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
pucR C-terminal helix-turn-helix domain protein			Regulator of polyketide synthase expression		CDS	FIG00822825: hypothetical protein			gs-sh	0	0	
zinc-binding dehydrogenase family protein			NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	Quinone oxidoreductase	1.6.5.5		0	0	base_ec	
cytochrome oxidase assembly family protein			Uncharacterized protein required for cytochrome oxidase assembly		CDS	Cytochrome oxidase assembly protein			tf_idf	lit-s	tf_idf	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
ABC-2 transporter family protein			ABC transporter efflux protein, DrrB family		CDS	"ABC-type multidrug transport system, permease component"			0	0	orth	
ABC transporter family protein			ABC-type multidrug transport system, ATPase component		CDS	"ABC-type multidrug transport system, ATPase component"			0	0	lit-s	
putative membrane protein			hypothetical protein	2.4.1.-	CDS	POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN			base_one HP	orth	base_one HP	
bacterial regulatory , arsR family protein			Predicted transcriptional regulator		CDS	Iron-sulfur cluster regulator SufR			gs-sh	0	0	
feS assembly protein SufB		sufB	ABC-type transport system involved in Fe-S cluster assembly, permease component		CDS	Iron-sulfur cluster assembly protein SufB @ intein-containing			gs-sh	gs-sh	gs-sh	
feS assembly protein SufD		sufD	Iron-regulated ABC transporter permease protein SufD		CDS	Iron-sulfur cluster assembly protein SufD			base_tigr	gs-sh	gs-sh	
feS assembly ATPase SufC		sufC	FeS assembly ATPase SufC		CDS	Iron-sulfur cluster assembly ATPase protein SufC			base_tigr	gs-sh	gs-sh	
cysteine desulfurase, SufS family protein		sufS	cysteine desulfurase	4.4.1.16, 2.8.1.7,2.8.1.7	CDS	"Cysteine desulfurase, SufS subfamily"	2.8.1.7		base_tigr	lit-s	base_ec-d	
SUF system FeS assembly protein, NifU family			SUF system FeS assembly protein, NifU family		CDS	"Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2"			base_lit-s	0	0	
conserved hypothetical protein			Predicted metal-sulfur cluster biosynthetic enzyme		CDS	PaaD-like protein (DUF59) involved in Fe-S cluster assembly			base_one HP	base_one HP	gs-sh	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase FadE15			0	tf_idf	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
cadmium-translocating P-type ATPase	3.6.3.3	cadA	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	3.6.3.-	CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		gs-sh	base_ec-d	0	
thioredoxin family protein			Thioredoxin domain-containing protein		CDS	Thioredoxin TrxA			lit-s	tf_idf	gs-sh	
thioredoxin		trxA	thioredoxin		CDS	Thioredoxin TrxB1			base_lit-s	0	0	
enoyl-CoA hydratase/isomerase family protein			Enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		tf_idf	tf_idf	base_ec	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ATPase components of ABC transporters with duplicated ATPase domains		CDS	ABC transporter ATP-binding protein			gs-sh	gs-sh	map	
putative transcriptional regulatory protein			hypothetical protein		CDS	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN			base_one HP	lit-s	base_one HP	
HTH-type transcriptional repressor AcnR		acnR	transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
aconitate hydratase 1	4.2.1.3	acnA	aconitase (EC 4.2.1.3)	4.2.1.3	CDS	Aconitate hydratase @ 2-methylisocitrate dehydratase	4.2.1.3, 4.2.1.99		base_tigr	base_ec-d	base_ec-d	
putative conserved membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
nlpC/P60 family protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	NLP/P60 family protein			gs-sh	0	0	
nlpC/P60 family protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	Invasion protein			gs-sh	0	0	
AAA domain family protein			MoxR-like ATPases	3.6.3.-	CDS	COG0714: MoxR-like ATPases			0	0	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
von Willebrand factor type A domain protein			Mg-chelatase subunit ChlD		CDS	Possible membrane protein			0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4095).		CDS	FIG00821775: hypothetical protein			base_one HP	base_one HP	lit-s	
3-oxoacyl-[acyl-carrier-protein] reductase FabG1	1.1.1.100	fabG1	3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)	1.1.1.100	CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		base_ec	base_ec	base_ec	
enoyl-[acyl-carrier-protein] reductase [NADH]	1.3.1.9	inhA	Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)	1.3.1.9	CDS	Enoyl-[acyl-carrier-protein] reductase [NADH]	1.3.1.9		base_ec	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
ferrochelatase	4.99.1.1	hemH	ferrochelatase (EC 4.99.1.1)	4.99.1.1	CDS	"Ferrochelatase, protoheme ferro-lyase"	4.99.1.1		base_tigr	base_ec	base_ec	
membrane protein implicated in regulation of membrane protease activity			Membrane protein implicated in regulation of membrane protease activity		CDS	Putative activity regulator of membrane protease YbbK			lit-s	0	0	
SPFH domain / Band 7 family protein			SPFH domain, Band 7 family protein		CDS	Putative stomatin/prohibitin-family membrane protease subunit YbbK			lit-s	0	0	
doxX-like family protein			DoxX-like family.		CDS	FIG00822897: hypothetical protein			lit-s	0	0	
methylmalonyl-CoA mutase family protein			Methylmalonyl-CoA mutase, N-terminal domain/subunit		CDS	methylmalonyl-CoA mutase( EC:5.4.99.2 )			0	0	0	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
hypothetical protein						FIG00821853: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	DedA family protein paralog			base_one HP	base_one HP	gs-sh	
methylmalonyl-CoA mutase, small subunit	5.4.99.2	mutA	methylmalonyl-CoA mutase, heterodimeric type, beta chain	5.4.99.2	CDS	"Methylmalonyl-CoA mutase, small subunit"	5.4.99.2		base_ec	base_ec	base_ec	
methylmalonyl-CoA mutase N-terminal domain protein	5.4.99.-		methylmalonyl-CoA mutase (EC 5.4.99.2)	5.4.99.2	CDS	Methylmalonyl-CoA mutase	5.4.99.2		lit-s	lit-s	base_ec	
putative antitoxin MazE4			hypothetical protein		CDS	FIG00821542: hypothetical protein			base_one HP	0	base_one HP	
mRNA interferase MazF4	3.1.-.-	mazF4	Growth inhibitor	3.1.-	CDS	FIG00822400: hypothetical protein			0	0	0	
LAO/AO transport system ATPase	2.7.-.-		LAO/AO transport system ATPase	2.7.-	CDS	putative periplasmic protein kinase ArgK and related GTPases of G3E family			base_lit-s	map	gs-sh	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Esterase LipL			0	0	0	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase	2.1.1.-		0	lit-s	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00820700: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein						FIG00821021: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative glycosyltransferases			Glycosyltransferases involved in cell wall biogenesis	2.4.-	CDS	"Glycosyl transferase, family 2"			0	0	0	
phytanoyl-CoA dioxygenase family protein			Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin		CDS	FIG027348: hypothetical protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821234: hypothetical protein			lit-s	base_one HP	base_one HP	
degT/DnrJ/EryC1/StrS aminotransferase family protein			Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis		CDS	hypothetical protein			gs-sh	base_one HP	base_one HP	
degT/DnrJ/EryC1/StrS aminotransferase family protein			Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis		CDS	4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase			gs-sh	0	0	
sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family protein			sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family		CDS	Acyltransferase			base_tigr	0	0	
conserved hypothetical protein			Methyltransferase domain.		CDS	SAM (And some other nucleotide) binding motif			base_one HP	base_one HP	0	
SAM-binding motif containing domain protein						SAM (And some other nucleotide) binding motif			base_one miss	0	base_one miss	
wbqC-like family protein			WbqC-like protein family.		CDS	FIG00821895: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2029).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
NAD dependent epimerase/dehydratase family protein			hypothetical protein		CDS	FIG00822916: hypothetical protein			base_one HP	0	base_one HP	
methyltransferase domain protein			Methyltransferase domain.		CDS	Methyltransferase domain			lit-s	lit-s	lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
putative membrane protein			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
GDP-mannose 4,6-dehydratase	4.2.1.47	gmd	GDP-mannose 4,6-dehydratase	4.2.1.47	CDS	"""GDP-mannose 4,6-dehydratase"""	4.2.1.47		base_lit-s	base_ec	base_ec	
GDP-L-fucose synthase 1	1.1.1.271	GER1	Nucleoside-diphosphate-sugar epimerases	1.1.1.271	CDS	GDP-fucose synthetase			base_ec	0	0	
methyltransferase, FkbM family domain protein			methyltransferase, FkbM family		CDS	FkbM family methyltransferase			base_tigr	lit-s	lit-s	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	Putative glycosyl transferase			0	tf_idf	0	
methyltransferase domain protein			Methyltransferase domain.		CDS	FIG00822023: hypothetical protein			lit-s	0	0	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	hypothetical protein Rv1516c			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2910).		CDS	hypothetical protein Rv1517			base_one HP	base_one HP	0	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	Glycosyltransferase PglI	2.4.1.-		0	0	0	
degT/DnrJ/EryC1/StrS aminotransferase family protein						FIG00821351: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820990: hypothetical protein			lit-s	base_one HP	base_one HP	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	Uncharacterized protein Rv1520/MT1570			0	0	0	
long-chain-fatty-acid--AMP ligase FadD28	6.2.1.-	fadD28	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
membrane transport protein mmpL8		mmpL8	Transport protein		CDS	Putative membrane protein MmpL12			gs-sh	0	0	
methyltransferase domain protein						FIG00820235: hypothetical protein			base_one miss	0	base_one miss	
ubiE/COQ5 methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Probable methyltransferase	2.1.1.-		gs-sh	gs-sh	map	
glycosyltransferase family 28 N-terminal domain protein			Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	Uncharacterized glycosyltransferase Rv1524/MT1575	2.-.-.-		0	0	0	
glycosyltransferase family 28 N-terminal domain protein			Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	Uncharacterized protein Rv1526c/MT1577			0	0	0	
putative rhamnosyl transferase wbbL2			Predicted glycosyltransferases		CDS	POSSIBLE RHAMNOSYL TRANSFERASE WBBL2			0	lit-s	0	
mycocerosic acid synthase	2.3.1.111	mas	Polyketide synthase modules and related proteins		CDS	Polyketide synthase			gs-sh	map	tf_idf	
putative polyketide synthase associated protein papA4			hypothetical protein		CDS	PROBABLE CONSERVED POLYKETIDE SYNTHASE ASSOCIATED PROTEIN PAPA4			base_one HP	lit-s	base_one HP	
long-chain-fatty-acid--AMP ligase FadD28	6.2.1.-	fadD28	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases	1.1.1.1	CDS	Alcohol dehydrogenase	1.1.1.1		0	0	base_ec	
carboxymuconolactone decarboxylase family protein			Uncharacterized conserved protein		CDS	Carboxymuconolactone decarboxylase			0	lit-s	0	
conserved hypothetical protein			uncharacterized domain 1		CDS	Putative uncharacterized protein BCG_1584c			base_one HP	base_one HP	0	
nitronate monooxygenase family protein			Dioxygenases related to 2-nitropropane dioxygenase		CDS	Enoyl-[acyl-carrier-protein] reductase [FMN]	1.3.1.9		0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein			hypothetical protein		CDS	Putative uncharacterized protein BCG_1587			lit-s	base_one HP	base_one HP	
isoleucine--tRNA ligase	6.1.1.5	ileS	Isoleucyl-tRNA synthetase (EC 6.1.1.5)	6.1.1.5	CDS	Isoleucyl-tRNA synthetase	6.1.1.5		base_tigr	base_ec	base_ec	
asparaginase family protein			asparaginase (EC 3.5.1.1)	3.5.1.1	CDS	L-asparaginase	3.5.1.1		lit-s	map	base_ec	
impB/mucB/samB family protein			Nucleotidyltransferase/DNA polymerase involved in DNA repair	2.7.7.7	CDS	DNA polymerase IV	2.7.7.7		gs-sh	gs-sh	base_ec	
signal peptidase II	3.4.23.36	lspA	signal peptidase II (EC:3.4.23.36). Aspartic peptidase. MEROPS family A08	3.4.23.36	CDS	Lipoprotein signal peptidase	3.4.23.36		base_tigr	base_ec	base_ec	
pseudouridine synthase, RluA family protein	5.4.99.-		ribosomal large subunit pseudouridine synthase D	5.4.99.23,5.4.99.-	CDS	Ribosomal large subunit pseudouridine synthase D	4.2.1.70		base_tigr	map	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria, putative lipoprotein		CDS	"""Lipoprotein, LprL"""			base_one HP	base_one HP	0	
group 1 truncated hemoglobin glbN		glbN	Truncated hemoglobins		CDS	Cyanoglobin; Hemoglobin-like protein HbN			gs-sh	0	0	
hypothetical protein									base_one HP	base_one HP	base_both miss	
fatty acyl-CoA reductase	1.2.1.n2	acr1	Short-chain dehydrogenases of various substrate specificities		CDS	"""Oxidoreductase, short-chain dehydrogenase/reductase family"""			gs-sh	0	0	
short chain dehydrogenase family protein			Short-chain dehydrogenases of various substrate specificities		CDS	Ketoacyl reductase			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00820144: hypothetical protein			lit-s	0	0	
DNA polymerase III, alpha subunit	2.7.7.7	dnaE	DNA polymerase III, alpha subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III alpha subunit	2.7.7.7		base_tigr	base_ec	base_ec	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
AMP-binding enzyme family protein			Long-chain acyl-CoA synthetases (AMP-forming)		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
AMP-binding enzyme family protein			Long-chain acyl-CoA synthetases (AMP-forming)		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
acyltransferase family protein			glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	2.3.1.15	CDS	Glycerol-3-phosphate acyltransferase	2.3.1.15		0	0	base_ec	
hypothetical protein			hypothetical protein		CDS	FIG00821243: hypothetical protein			base_lit-s	base_one HP	base_one HP	
fumarate reductase, flavoprotein subunit	1.3.99.1	frdA	succinate dehydrogenase subunit A	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase flavoprotein subunit	1.3.99.1		base_ec-d	base_ec	base_ec-d	
succinate dehydrogenase and fumarate reductase iron-sulfur family protein			succinate dehydrogenase subunit B	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase iron-sulfur protein	1.3.99.1		base_tigr	tf_idf	base_ec-d	
fumarate reductase subunit C family protein			Fumarate reductase subunit C		CDS	Fumarate reductase subunit C			lit-s	lit-s	base_lit-s	
fumarate reductase subunit D family protein			succinate dehydrogenase subunit D	1.3.5.1	CDS	Fumarate reductase subunit D			0	lit-s	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
MMPL family protein			Predicted drug exporters of the RND superfamily		CDS	putative transmembrane transport protein mmpL6			0	0	0	
putative nitroreductase Rv1558/MT1609			deazaflavin-dependent nitroreductase family protein		CDS	AclJ			0	0	0	
threonine dehydratase	4.3.1.19	ilvA	L-threonine ammonia-lyase (EC 4.3.1.19)	4.3.1.19	CDS	Threonine dehydratase	4.3.1.19		base_tigr	base_ec	base_ec	
antitoxin VapB11		vapB11	Transcription regulator of the Arc/MetJ class		CDS	FIG00821924: hypothetical protein			0	0	0	
ribonuclease VapC11	3.1.-.-	vapC11	Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00820947: hypothetical protein			0	0	0	
malto-oligosyltrehalose trehalohydrolase	3.2.1.141	treZ	maltooligosyl trehalose hydrolase (EC 3.2.1.141)	3.2.1.141	CDS	Malto-oligosyltrehalose trehalohydrolase	3.2.1.141		base_tigr	base_ec	base_ec	
malto-oligosyltrehalose synthase	5.4.99.15	treY	maltooligosyl trehalose synthase (EC 5.4.99.15)	5.4.99.15	CDS	Malto-oligosyltrehalose synthase	5.4.99.15		base_tigr	base_ec	base_ec	
glycogen debranching enzyme GlgX	3.2.1.-	glgX	isoamylase	3.2.1.-	CDS	Glycogen debranching enzyme	3.2.1.-		base_tigr	orth	orth	
acyltransferase family protein			Predicted acyltransferases		CDS	O-antigen acetylase			0	0	0	
conserved hypothetical protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	Invasion protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821756: hypothetical protein			lit-s	base_one HP	base_one HP	
adenosylmethionine-8-amino-7-oxononanoate transaminase	2.6.1.62	bioA	adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme (EC 2.6.1.62)	2.6.1.62	CDS	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	2.6.1.62		base_tigr	base_ec	base_ec	
aminotransferase class-V family protein			7-keto-8-aminopelargonate synthetase and related enzymes	2.3.1.47	CDS	8-amino-7-oxononanoate synthase	2.3.1.47		0	0	base_ec	
dethiobiotin synthase	6.3.3.3	bioD	dethiobiotin synthase (EC 6.3.3.3)	6.3.3.3	CDS	Dethiobiotin synthetase	6.3.3.3		base_tigr	base_ec	base_ec	
2'-5' RNA ligase superfamily protein			2'-5' RNA ligase		CDS	FIG00820026: hypothetical protein			lit-s	0	0	
hypothetical protein						hypothetical protein			base_one HP	base_lit-s	base_one HP	
putative phiRv1 phage protein			hypothetical protein		CDS	Probable phiRV1 phage protein			base_one HP	lit-s	base_one HP	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
phage major capsid protein, HK97 family			phage major capsid protein, HK97 family		CDS	Phage major capsid protein			base_lit-s	tf_idf	tf_idf	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
phage prohead protease, HK97 family	3.4.-.-		prohead peptidase. Unknown type peptidase. MEROPS family U35		CDS	"PhiRv1 phage, prohead protease, HK97 family"			base_tigr	tf_idf	map	
phage terminase, small subunit, P27 family			phage terminase, small subunit, putative, P27 family		CDS	Probable phiRv1 phage protein			base_tigr	orth	orth	
putative phiRv1 phage protein			hypothetical protein		CDS	Probable phiRv1 phage protein			base_one HP	lit-s	base_one HP	
putative phiRv1 phage protein			hypothetical protein		CDS	Probable phiRv1 phage protein			base_one HP	lit-s	base_one HP	
putative phiRv1 phage protein			hypothetical protein		CDS	Probable phiRv1 phage protein			base_one HP	lit-s	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
phage/plasmid primase, P4 family, C-terminal domain protein			phage/plasmid primase, P4 family, C-terminal domain		CDS	"DNA primase/helicase, phage-associated"			base_tigr	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2742).		CDS	Probable phiRv1 phage protein			base_one HP	base_one HP	0	
putative phiRv1 phage protein			hypothetical protein		CDS	Putative phiRv1 phage protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Putative phiRv1 phage protein			lit-s	base_one HP	base_one HP	
recombinase family protein			Site-specific recombinases, DNA invertase Pin homologs		CDS	Probable phiRv1 integrase			0	0	0	
conserved hypothetical protein						Partial REP13E12 repeat protein			base_one HP	base_one HP	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			Domain of unknown function (DUF222).		CDS				base_one miss	base_both miss	base_one miss	
biotin synthase	2.8.1.6	bioB	biotin synthase (EC 2.8.1.6)	2.8.1.6	CDS	Biotin synthase	2.8.1.6		base_tigr	base_ec	base_ec	
			hypothetical protein		CDS	FIG00820826: hypothetical protein			base_one HP	base_one miss	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2567).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
alpha/beta hydrolase family protein			Secretory lipase.		CDS	Lipase 1	3.1.1.3		0	0	0	
NUDIX domain protein			ADP-ribose pyrophosphatase		CDS	Nudix-related transcriptional regulator NrtR			0	0	0	
quinolinate synthetase complex, A subunit	2.5.1.72	nadA	quinolinate synthetase (EC 2.5.1.72)	2.5.1.72	CDS	Quinolinate synthetase	2.5.1.72		base_tigr	base_ec	base_ec	
L-aspartate oxidase	1.4.3.16	nadB	L-aspartate oxidase (EC 1.4.3.16)	1.4.3.16	CDS	L-aspartate oxidase	1.4.3.16		base_tigr	base_lit-s	base_ec	
nicotinate-nucleotide diphosphorylase	2.4.2.19	nadC	nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19)	2.4.2.19	CDS	Quinolinate phosphoribosyltransferase [decarboxylating]	2.4.2.19		base_tigr	base_ec	base_ec	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase	2.1.1.-		0	lit-s	0	
deazaflavin-dependent oxidoreductase, nitroreductase family protein			deazaflavin-dependent nitroreductase family protein		CDS	FIG00820654: hypothetical protein			base_tigr	0	0	
histidinol dehydrogenase	1.1.1.23	hisD	histidinol dehydrogenase (EC 1.1.1.23)	1.1.1.23	CDS	Histidinol dehydrogenase	1.1.1.23		base_tigr	base_ec	base_ec	
histidinol-phosphate transaminase	2.6.1.9	hisC	histidinol phosphate aminotransferase apoenzyme (EC 2.6.1.9)	2.6.1.9	CDS	Histidinol-phosphate aminotransferase	2.6.1.9		base_tigr	base_ec	base_ec	
imidazoleglycerol-phosphate dehydratase	4.2.1.19	hisB	imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)	4.2.1.19	CDS	Imidazoleglycerol-phosphate dehydratase	4.2.1.19		base_ec	base_ec	base_ec	
imidazole glycerol phosphate synthase, glutamine amidotransferase subunit	2.4.2.-	hisH	imidazole glycerol phosphate synthase subunit hisH (EC 2.4.2.-)	2.4.2.-	CDS	Imidazole glycerol phosphate synthase amidotransferase subunit	2.4.2.-		base_tigr	gs-sh	gs-sh	
bifunctional HisA/TrpF protein	5.3.1.16		1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase	5.3.1.24,5.3.1.16	CDS	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase / Acting phosphoribosylanthranilate isomerase	5.3.1.16, 5.3.1.24		base_ec-d	base_ec-d	base_ec-d	
inositol-1-monophosphatase ImpA	3.1.3.25	impA	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	3.1.3.25	CDS	Histidinol-phosphatase [alternative form]	3.1.3.15		base_ec	base_ec-d	base_ec-d	
imidazole glycerol phosphate synthase subunit hisF	4.1.3.-	hisF	imidazole glycerol phosphate synthase subunit hisF (EC 4.1.3.-)	4.1.3.-	CDS	Imidazole glycerol phosphate synthase cyclase subunit	4.1.3.-		lit-s	gs-sh	gs-sh	
phosphoribosyl-AMP cyclohydrolase family protein			phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)	3.5.4.19	CDS	Phosphoribosyl-AMP cyclohydrolase	3.5.4.19		lit-s	lit-s	base_ec	
sodium/calcium exchanger family protein			Ca2+/H+ antiporter		CDS	Calcium/proton antiporter			0	0	orth	
ahpC/TSA family protein			Peroxiredoxin	1.11.1.15	CDS	Alkyl hydroperoxide reductase subunit C-like protein			gs-sh	0	0	
anthranilate synthase component I	4.1.3.27	trpE	anthranilate synthase, component I (EC 4.1.3.27)	4.1.3.27	CDS	"Anthranilate synthase, aminase component"	4.1.3.27		base_tigr	base_ec	base_ec	
tryptophan-associated transmembrane family protein			trp region conserved hypothetical membrane protein		CDS	FIG00997095: hypothetical protein			0	0	0	
indole-3-glycerol phosphate synthase	4.1.1.48	trpC	indole-3-glycerol phosphate synthase (EC 4.1.1.48)	4.1.1.48	CDS	Indole-3-glycerol phosphate synthase	4.1.1.48		base_ec	base_ec	base_ec	
tryptophan synthase, beta subunit	4.2.1.20	trpB	tryptophan synthase, beta chain (EC 4.2.1.20)	4.2.1.20	CDS	Tryptophan synthase beta chain	4.2.1.20		base_tigr	base_ec	base_ec	
tryptophan synthase, alpha subunit	4.2.1.20	trpA	tryptophan synthase, alpha chain (EC 4.2.1.20)	4.2.1.20	CDS	Tryptophan synthase alpha chain	4.2.1.20		base_tigr	base_ec	base_ec	
hypothetical protein						FIG00821863: hypothetical protein			base_one HP	base_one HP	base_one miss	
prolipoprotein diacylglyceryl transferase	2.4.99.-	lgt	prolipoprotein diacylglyceryl transferase		CDS	Prolipoprotein diacylglyceryl transferase	2.4.99.-		base_lit-s	lit-s	lit-s	
TM2 domain protein			Predicted membrane protein		CDS	FIG00822583: hypothetical protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2752).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
pyruvate kinase	2.7.1.40	pyk	pyruvate kinase (EC 2.7.1.40)	2.7.1.40	CDS	Pyruvate kinase	2.7.1.40		base_tigr	base_ec	base_ec	
acyl-CoA thioesterase II	3.1.2.-	tesB	acyl-CoA thioesterase II	3.1.2.-	CDS	Acyl-CoA thioesterase II	3.1.2.-		base_lit-s	lit-s	lit-s	
hypothetical protein						FIG00824830: hypothetical protein			base_one HP	base_one HP	base_one miss	
thiol reductant ABC exporter, CydC subunit		cydC	thiol reductant ABC exporter, CydC subunit		CDS	Transport ATP-binding protein CydC			base_lit-s	0	0	
			Uncharacterized conserved protein		CDS				base_one miss	base_both miss	base_one miss	
thiol reductant ABC exporter, CydD subunit		cydD	thiol reductant ABC exporter, CydD subunit		CDS	Transport ATP-binding protein CydD			base_lit-s	0	0	
cytochrome d ubiquinol oxidase, subunit II	1.10.3.-	cydB	cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein	1.10.3.-,1.10.3.10	CDS	Cytochrome d ubiquinol oxidase subunit II	1.10.3.-		base_tigr	lit-s	map	
bacterial Cytochrome Ubiquinol Oxidase family protein			cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein	1.10.3.-,1.10.3.10	CDS	Cytochrome d ubiquinol oxidase subunit I	1.10.3.-		0	tf_idf	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Possible membrane protein			base_one HP	base_one HP	0	
adenylate cyclase	4.6.1.1	cya	Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	Adenylate cyclase	4.6.1.1		gs-sh	base_ec	map	
putative transcriptional regulatory protein pdtaR			response regulator receiver and ANTAR domain protein		CDS	response regulator			0	0	orth	
3-Oxoacyl-[acyl-carrier-(ACP)] synthase III family protein			Acetyl-CoA acetyltransferase		CDS	Probable nonspecific lipid-transfer protein			0	0	0	
conserved hypothetical protein			Predicted nucleic-acid-binding protein containing a Zn-ribbon		CDS	FIG00823085: hypothetical protein			base_one HP	base_one HP	0	
DNA polymerase I family protein	2.7.7.7	polA	DNA polymerase I (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase I	2.7.7.7		base_tigr	base_ec	base_ec	
S1 RNA binding domain protein			SSU ribosomal protein S1P		CDS	SSU ribosomal protein S1p			0	0	lit-s	
dephospho-CoA kinase	2.7.1.24	coaE	dephospho-CoA kinase (EC 2.7.1.24)	2.7.1.24	CDS	Dephospho-CoA kinase	2.7.1.24		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00996124: hypothetical protein			base_one HP	base_one HP	lit-s	
excinuclease ABC subunit B	3.1.25.-	uvrB	Excinuclease ABC subunit B		CDS	Excinuclease ABC subunit B			base_tigr	lit-s	base_lit-s	
dolichyl-phosphate-mannose-mannosyltransferase family protein			Predicted membrane protein	2.4.1.-	CDS	Possible membrane protein			0	0	lit-s	
putative multidrug-efflux transporter Rv1634/MT1670			Arabinose efflux permease		CDS	Drug efflux membrane protein			0	0	0	
putative predicted protein			hypothetical protein		CDS	FIG00824005: hypothetical protein			base_one HP	lit-s	base_one HP	
universal stress family protein			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein UspA and related nucleotide-binding proteins			0	0	base_lit-s	
metallo-beta-lactamase superfamily protein			Zn-dependent hydrolases, including glyoxylases		CDS	metallo-beta-lactamase superfamily protein			0	base_lit-s	0	
excinuclease ABC subunit A	3.1.25.-	uvrA	Excinuclease ABC subunit A		CDS	Excinuclease ABC subunit A			base_tigr	lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820127: hypothetical protein			lit-s	base_one HP	base_one HP	
esterase family protein			Predicted esterase		CDS	FIG00824695: hypothetical protein			lit-s	0	0	
lysine--tRNA ligase	6.1.1.6	lysS	lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	Putative membrane protein found fused to lysyl-tRNA synthetase like protein / Lysyl-tRNA synthetase (class II) related protein found fused to membrane protein			base_tigr	gs-sh	gs-sh	
translation initiation factor IF-3		infC	bacterial translation initiation factor 3 (bIF-3)		CDS	Translation initiation factor 3			base_tigr	gs-sh	map	
ribosomal protein L35		rpmI	LSU ribosomal protein L35P		CDS	LSU ribosomal protein L35p			base_tigr	map	lit-s	
ribosomal protein L20		rplT	LSU ribosomal protein L20P		CDS	LSU ribosomal protein L20p			base_tigr	map	lit-s	
RNA 2'-O ribose methyltransferase substrate binding family protein			rRNA methylases		CDS	"RNA methyltransferase, TrmH family"			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820092: hypothetical protein			base_one HP	base_one HP	lit-s	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
adenylate and Guanylate cyclase catalytic domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	Purine cyclase-related protein			0	0	0	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
phenylalanine--tRNA ligase, alpha subunit	6.1.1.20	pheS	phenylalanyl-tRNA synthetase, alpha subunit (EC 6.1.1.20)	6.1.1.20	CDS	Phenylalanyl-tRNA synthetase alpha chain	6.1.1.20		base_tigr	base_ec	base_ec	
phenylalanine--tRNA ligase, beta subunit	6.1.1.20	pheT	phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20)	6.1.1.20	CDS	Phenylalanyl-tRNA synthetase beta chain	6.1.1.20		base_tigr	base_ec	base_ec	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
N-acetyl-gamma-glutamyl-phosphate reductase	1.2.1.38	argC	N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)	1.2.1.38	CDS	N-acetyl-gamma-glutamyl-phosphate reductase	1.2.1.38		base_tigr	base_lit-s	base_ec	
glutamate N-acetyltransferase/amino-acid acetyltransferase	2.3.1.35	argJ	glutamate N-acetyltransferase	2.3.1.1, 2.3.1.35,2.3.1.35	CDS	Glutamate N-acetyltransferase / N-acetylglutamate synthase	2.3.1.35, 2.3.1.1		base_tigr	base_ec-d	base_ec-d	
acetylglutamate kinase	2.7.2.8	argB	N-acetylglutamate kinase (EC 2.7.2.8)	2.7.2.8	CDS	Acetylglutamate kinase	2.7.2.8		base_ec	base_ec	base_ec	
acetylornithine aminotransferase	2.6.1.11	argD	acetylornithine aminotransferase apoenzyme (EC 2.6.1.11)	2.6.1.11	CDS	Acetylornithine aminotransferase	2.6.1.11		base_ec	base_ec	base_ec	
ornithine carbamoyltransferase	2.1.3.3	argF	ornithine carbamoyltransferase (EC 2.1.3.3)	2.1.3.3	CDS	Ornithine carbamoyltransferase	2.1.3.3		base_tigr	base_ec	base_ec	
arginine repressor		argR	transcriptional regulator, ArgR family		CDS	"Arginine pathway regulatory protein ArgR, repressor of arg regulon"			base_tigr	gs-sh	gs-sh	
argininosuccinate synthase	6.3.4.5	argG	argininosuccinate synthase (EC 6.3.4.5)	6.3.4.5	CDS	Argininosuccinate synthase	6.3.4.5		base_tigr	base_ec	base_ec	
argininosuccinate lyase	4.3.2.1	argH	argininosuccinate lyase (EC 4.3.2.1)	4.3.2.1	CDS	Argininosuccinate lyase	4.3.2.1		base_tigr	base_ec	base_ec	
polyketide synthase-like Pks10	2.3.1.-	pks10	Predicted naringenin-chalcone synthase		CDS	Chalcone synthase	2.3.1.74		gs-sh	gs-sh	map	
phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	KR domain./Alcohol dehydrogenase GroES-like domain./Acyl transferase domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	Probable polyketide synthase pks7			gs-sh	0	0	
phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	Polyketide synthase modules and related proteins		CDS	Probable polyketide synthase pks7			gs-sh	0	0	
polysaccharide biosynthesis family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Polyketide synthase Pks17			0	0	0	
phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	Polyketide synthase modules and related proteins		CDS	Polyketide synthase			gs-sh	gs-sh	map	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 139			lit-s	tf_idf	tf_idf	
alpha-pyrone synthesis polyketide synthase-like Pks11	2.3.1.-	pks11	Predicted naringenin-chalcone synthase		CDS	Chalcone synthase	2.3.1.74		gs-sh	gs-sh	map	
ABC transporter family protein			ATPase components of ABC transporters with duplicated ATPase domains		CDS	"ABC transporter, ATP-binding protein"			0	tf_idf	0	
ABC transporter family protein			ATPase components of ABC transporters with duplicated ATPase domains		CDS	hypothetical protein Rv1667c			0	0	0	
						FIG00821328: hypothetical protein			base_both miss	base_one miss	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820311: hypothetical protein			base_one HP	base_one HP	lit-s	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
major Facilitator Superfamily protein			Sugar phosphate permease		CDS	Integral membrane transport protein			0	0	0	
transglutaminase-like superfamily protein			Transglutaminase-like enzymes, putative cysteine proteases		CDS	"""Transglutaminase-like enzymes, putative cysteine proteases"""			0	0	0	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	"Transcriptional regulator, ArsR family"			gs-sh	gs-sh	lit-s	
cyclic nucleotide-binding domain protein			cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	"transcriptional regulator, Crp/Fnr family"			0	0	0	
integral membrane domain protein			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
ahpC/TSA family protein			Peroxiredoxin		CDS	FIG00820852: hypothetical protein			gs-sh	0	0	
soluble secreted antigen MPT53		mpt53	Thiol-disulfide isomerase and thioredoxins		CDS	Lipoprotein DsbF			gs-sh	0	0	
putative membrane protein			hypothetical protein		CDS	fig|419947.9.peg.2833			base_one HP	0	base_one HP	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	"Acyl-CoA dehydrogenase, short-chain specific"	1.3.99.2		0	0	0	
ABC transporter, phosphonate, periplasmic substrate-binding family protein			ABC-type phosphate/phosphonate transport system, periplasmic component		CDS	Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1)			0	0	0	
radical SAM superfamily protein			Radical SAM superfamily.		CDS	Molybdopterin biosynthesis protein MoeX			lit-s	0	0	
divIVA family protein			DivIVA protein.		CDS	AbpS-like protein			lit-s	0	0	
hypothetical protein									base_one HP	base_one HP	base_both miss	
alpha/beta hydrolase fold family protein			Poly(3-hydroxyalkanoate) synthetase	6.2.1.-	CDS	Polyhydroxyalkanoic acid synthase			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster			base_one HP	base_one HP	0	
ABC-2 type transporter family protein			ABC transporter efflux protein, DrrB family		CDS	"""ABC drug efflux pump, inner membrane subunit, DrrB family"""			0	0	0	
ABC transporter family protein			ABC-type multidrug transport system, ATPase component		CDS	ABC transporter ATP-binding protein			0	tf_idf	0	
DNA-3-methyladenine glycosylase family protein	3.2.2.-		DNA-3-methyladenine glycosylase (3mg)	3.2.2.21	CDS	DNA-3-methyladenine glycosylase II	3.2.2.21		base_tigr	map	base_ec	
tyrosine--tRNA ligase	6.1.1.1	tyrS	tyrosyl-tRNA synthetase (EC 6.1.1.1)	6.1.1.1	CDS	Tyrosyl-tRNA synthetase	6.1.1.1		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	Lipoprotein LprJ			base_one HP	base_one HP	0	
tetratrico peptide repeat family protein			Tetratrico peptide repeat.		CDS	TPR-repeat-containing protein			lit-s	0	0	
HAD hydrolase, IIA family protein			Predicted sugar phosphatases of the HAD superfamily		CDS	4-nitrophenylphosphatase	3.1.3.41		base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820006: hypothetical protein			lit-s	base_one HP	base_one HP	
hemolysin TlyA family protein			hemolysin TlyA family protein		CDS	RNA binding methyltransferase FtsJ like			base_lit-s	map	gs-sh	
inorganic polyphosphate/ATP-NAD kinase	2.7.1.23	ppnK	Predicted sugar kinase	2.7.1.23	CDS	NAD kinase	2.7.1.23		base_ec	base_ec	base_ec	
DNA repair protein RecN		recN	DNA replication and repair protein RecN		CDS	DNA repair protein RecN			base_tigr	base_lit-s	gs-sh	
thiamine pyrophosphokinase C terminal family protein			Uncharacterized membrane-anchored protein conserved in bacteria		CDS	FIG005773: conserved membrane protein ML1361			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3186).		CDS	FIG007481: hypothetical protein			base_one HP	base_one HP	lit-s	
CTP synthase	6.3.4.2	pyrG	CTP synthase (EC 6.3.4.2)	6.3.4.2	CDS	CTP synthase	6.3.4.2		base_tigr	base_lit-s	base_ec	
NUDIX domain protein			NTP pyrophosphohydrolases including oxidative damage repair enzymes	3.6.1.13	CDS	ADP-ribose pyrophosphatase	3.6.1.13		0	0	base_ec	
tyrosine recombinase XerD		xerD	tyrosine recombinase XerD subunit		CDS	Tyrosine recombinase XerD			base_tigr	lit-s	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	FIG00829478: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820900: hypothetical protein			lit-s	base_one HP	base_one HP	
O-methyltransferase family protein			Predicted O-methyltransferase	2.1.1.6	CDS	Probable catechol-o-methyltransferase	2.1.1.6		lit-s	map	base_ec	
D-serine/D-alanine/glycine transporter		cycA	D-serine/D-alanine/glycine:proton symporter, AAT family (TC 2.A.3.1.7)		CDS	D-serine/D-alanine/glycine transporter			gs-sh	base_lit-s	map	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PPE family protein			Polymorphic PE/PPE proteins C terminal./PPE family.		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00821036: hypothetical protein			base_lit-s	base_one HP	base_one HP	
sulfate transporter family protein			Sulfate permease and related transporters (MFS superfamily)		CDS	Sulfate permease			tf_idf	0	0	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj			gs-sh	pfam-sh	gs-sh	
scpA/B family protein			condensin subunit ScpA		CDS	Segregation and condensation protein A			gs-sh	0	0	
segregation and condensation protein B		scpB	condensin subunit ScpB		CDS	Segregation and condensation protein B			base_tigr	lit-s	orth	
pseudouridine synthase family protein	5.4.99.-		ribosomal large subunit pseudouridine synthase B	5.4.99.22,5.4.99.-	CDS	Ribosomal large subunit pseudouridine synthase B	4.2.1.70		base_tigr	tf_idf	lit-s	
cytidylate kinase	2.7.4.14	cmk	cytidylate kinase (EC 2.7.4.14)	2.7.4.14	CDS	Cytidylate kinase	2.7.4.14		base_tigr	base_ec	base_ec	
ribosome-associated GTPase EngA		engA	ribosome-associated GTPase EngA		CDS	GTP-binding protein EngA			base_lit-s	0	0	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	COG1028: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)			0	0	lit-s	
NAD binding domain of 6-phosphogluconate dehydrogenase family protein			3-hydroxyacyl-CoA dehydrogenase	1.1.1.157,1.1.1.35	CDS	3-hydroxybutyryl-CoA dehydrogenase	1.1.1.157		0	0	base_ec-d	
cyclase family protein			Predicted metal-dependent hydrolase		CDS	Metal-dependent hydrolase			orth	map	lit-s	
cupin domain protein			Cupin domain.		CDS	FIG041522: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00820704: hypothetical protein			base_one HP	base_one HP	lit-s	
helix-turn-helix family protein			transcriptional regulator, IclR family		CDS	"Transcriptional regulator, IclR family"			0	0	lit-s	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Toxin 1, PIN domain"			pfam-sh	pfam-sh	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	Antitoxin 1			lit-s	base_one HP	base_one HP	
ATP-grasp domain protein			Biotin carboxylase		CDS	Biotin carboxylase-like protein			0	0	0	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	6-aminohexanoate-dimer hydrolase	3.5.1.46		0	orth	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820406: hypothetical protein			lit-s	base_one HP	base_one HP	
hxlR-like helix-turn-helix family protein			transcriptional regulator, HxlR family		CDS	"Transcriptional regulator, HxlR family"			gs-sh	map	lit-s	
FAD binding domain protein			FAD/FMN-containing dehydrogenases		CDS	Oxidoreductase			0	orth	0	
conserved hypothetical protein			TIGR03086 family protein		CDS	FIG00820895: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	FIG00819993: hypothetical protein			base_tigr	0	0	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Beta-lactamase	3.5.2.6		0	lit-s	0	
aldehyde dehydrogenase family protein			NAD-dependent aldehyde dehydrogenases	1.2.1.16	CDS	Aldehyde dehydrogenase	1.2.1.3		0	lit-s	base_ec-d	
ahpC/TSA family protein			Peroxiredoxin		CDS	Alkyl hydroperoxide reductase and/or thiol-specific antioxidant family (AhpC/TSA) protein			gs-sh	pfam-sh	gs-sh	
putative membrane protein Rv1733c/MT1774			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
2-oxoacid dehydrogenases acyltransferase family protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes		CDS	FIG00821291: hypothetical protein			0	0	0	
conserved hypothetical protein			Tellurite resistance protein and related permeases		CDS	C4-dicarboxylate transporter/malic acid transport protein			base_one HP	base_one HP	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
hypothetical protein			C4-dicarboxylate transporter/malic acid transport protein.		CDS	Tellurite-resistance/Dicarboxylate Transporter (TDT) family			base_one HP	base_one HP	0	
nitrate reductase molybdenum cofactor assembly chaperone		narJ	NarX protein		CDS	Probable nitrate reductase NarX( EC:1.7.99.4 )			gs-sh	0	0	
putative nitrate/nitrite transporter narK2			Nitrate/nitrite transporter		CDS	Nitrate/nitrite transporter co-occurring with respiratory nitrate reductase			0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF1876).		CDS	"FIG041371: hypothetical protein, Rv1738/MT1780"			base_one HP	base_one HP	tf_idf	
putative sulfate transporter Rv1739c/MT1781			high affinity sulphate transporter 1		CDS	Sulfate transporter			0	0	0	
antitoxin VapB30		vapB30	Uncharacterized protein conserved in bacteria		CDS	FIG00820182: hypothetical protein			0	0	lit-s	
putative ribonuclease VapC30			hypothetical protein		CDS	"Toxin 1, PIN domain"			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821912: hypothetical protein			lit-s	base_one HP	base_one HP	
serine/threonine-protein kinase pknE	2.7.11.1	pknE	Serine/threonine protein kinase	2.7.11.1	CDS	Serine/threonine-protein kinase PknE	2.7.11.1		base_ec	base_ec	base_ec	
conserved hypothetical protein						FIG00820409: hypothetical protein			base_one HP	base_one HP	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
isopentenyl-diphosphate delta-isomerase	5.3.3.2	idi	isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2)	5.3.3.2	CDS	Isopentenyl-diphosphate delta-isomerase	5.3.3.2		base_tigr	base_ec	base_ec	
hypothetical protein						FIG00830366: hypothetical protein			base_one HP	base_one HP	base_one miss	
serine/threonine-protein kinase pknF	2.7.11.1	pknF	Protein kinase domain.	2.7.11.1	CDS	Probable serine/threonine-protein kinase pknF	2.7.11.1		base_ec	base_ec	base_ec	
ABC transporter family protein			FHA modulated ABC efflux pump with fused ATPase and integral membrane subunits		CDS	Probable conserved transmembrane ATP-binding protein ABC transporter			0	0	orth	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Putative uncharacterized protein BCG_1787			lit-s	base_one HP	base_one HP	
long-chain-fatty-acid--CoA ligase FadD17	6.2.1.3	fadD17	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		gs-sh	base_ec	map	
FAD binding domain protein			2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases		CDS	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases			0	0	base_lit-s	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823939: hypothetical protein			lit-s	base_one HP	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein			Domain of unknown function (DUF4185).		CDS	FIG00821263: hypothetical protein			base_one HP	base_one HP	lit-s	
						FIG00825719: hypothetical protein			base_both miss	base_one miss	base_one miss	
phosphoesterase family protein			Phospholipase C		CDS	Phospholipase C 4 precursor	3.1.4.3		0	0	tf_idf	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
cutinase family protein			Cutinase.	3.1.1.-	CDS	Cutinase Cut1			lit-s	tf_idf	tf_idf	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
hypothetical protein						FIG00822708: hypothetical protein			base_one HP	base_one HP	base_one miss	
acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820067: hypothetical protein			lit-s	base_one HP	base_one HP	
heavy-metal-binding family protein			Uncharacterized conserved protein		CDS	FIG00825647: hypothetical protein			0	0	lit-s	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
HNH endonuclease family protein			Domain of unknown function (DUF222)./HNH endonuclease.		CDS	"Transcriptional regulator, IclR family"			pfam-sh	map	gs-sh	
putative transposase subunit B						PUTATIVE TRANSPOSASE (FRAGMENT)			base_one miss	0	base_one miss	
metal-sensitive transcriptional repressor family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820648: hypothetical protein			0	0	lit-s	
alkylhydroperoxidase AhpD family core domain protein			alkylhydroperoxidase AhpD family core domain		CDS	Possible carboxymuconolactone decarboxylase family protein	4.1.1.44		base_tigr	0	0	
PE family protein			PE family.		CDS	PE_PGRS			lit-s	0	0	
alanine racemase, N-terminal domain protein			Predicted amino acid aldolase or racemase		CDS	"L-gulono-1,4-lactone oxidase"	1.1.3.8		0	0	0	
peptidase M28 family protein			Predicted aminopeptidases		CDS	Putative aminopeptidase			0	0	0	
FAD-linked oxidoreductase family protein			FAD-linked oxidoreductase	1.1.3.8	CDS	"oxidoreductase, FAD-binding"			base_tigr	map	orth	
			Response regulator with putative antiterminator output domain		CDS				base_one miss	base_both miss	base_one miss	
bacterial transcriptional regulator family protein			transcriptional regulator, IclR family		CDS	"Transcriptional regulator, IclR family"			gs-sh	gs-sh	lit-s	
FAD binding domain protein			FAD/FMN-containing dehydrogenases		CDS	"oxidoreductase, FAD-binding"			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820194: hypothetical protein			lit-s	base_one HP	base_one HP	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 144			lit-s	tf_idf	tf_idf	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821218: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4407).		CDS	FIG00821637: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820556: hypothetical protein			lit-s	base_one HP	base_one HP	
4-alpha-glucanotransferase	2.4.1.25	malQ	4-alpha-glucanotransferase	2.4.1.25	CDS	4-alpha-glucanotransferase (amylomaltase)	2.4.1.25		base_lit-s	base_ec	base_ec	
type VII secretion protein EccB		eccB	type VII secretion protein EccB, Actinobacterial		CDS	Possible membrane protein			base_tigr	0	0	
ESX-5 secretion system eccCb5 domain protein		eccCb5	hypothetical protein		CDS	"Type VII secretion protein EccCa, FtsK/SpoIIIE family"			base_one HP	0	base_one HP	
type VII secretion protein EccCb		eccCb	type VII secretion protein EccCb		CDS	"Type VII secretion protein EccCa, FtsK/SpoIIIE family"			base_lit-s	map	gs-sh	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 143			lit-s	tf_idf	tf_idf	
4Fe-4S single cluster domain protein			Ferredoxin		CDS	Putative ferredoxin			0	0	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
putative ESAT-6-like protein 7			Proteins of 100 residues with WXG.		CDS	ESAT-6-like protein EsxK			0	0	0	
putative ESAT-6-like protein 6			Proteins of 100 residues with WXG.		CDS	ESAT-6-like protein EsxL			0	0	0	
espG family protein			EspG family.		CDS	FIG00820957: hypothetical protein			lit-s	0	0	
type VII secretion integral membrane protein EccD		eccD	type VII secretion integral membrane protein EccD		CDS	Type VII secretion integral membrane protein EccD			base_lit-s	lit-s	lit-s	
type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	Type VII secretion-associated serine protease mycosin			base_lit-s	lit-s	lit-s	
type VII secretion protein EccE		eccE	type VII secretion protein EccE		CDS	Type VII secretion protein EccE			base_lit-s	lit-s	lit-s	
type VII secretion AAA-ATPase EccA		eccA	type VII secretion AAA-ATPase EccA		CDS	Type VII secretion AAA-ATPase EccA			base_lit-s	lit-s	lit-s	
hypothetical protein			hypothetical protein		CDS	Lipoprotein LppT			base_lit-s	base_one HP	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	FIG00819992: hypothetical protein			base_one HP	base_one HP	lit-s	
									base_both miss	base_both miss	base_both miss	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	FIG00819992: hypothetical protein			base_one HP	base_one HP	lit-s	
mgtC family protein			Uncharacterized membrane protein		CDS	Mg(2+) transport ATPase protein C			gs-sh	orth	map	
pyridine nucleotide-disulfide oxidoreductase family protein			NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	NADH dehydrogenase	1.6.99.3		0	0	base_ec	
protein Rv1269c/MT1307			Domain of unknown function (DUF4189).		CDS	Possible membrane protein			0	0	0	
fatty acid hydroxylase superfamily protein			Sterol desaturase		CDS	Membrane-bound C-5 sterol desaturase Erg3			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820470: hypothetical protein			lit-s	base_one HP	base_one HP	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
FAD binding domain protein			Succinate dehydrogenase/fumarate reductase, flavoprotein subunit		CDS	"fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal:FAD dependent oxidoreductase"			0	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
ABC transporter family protein			ABC-type uncharacterized transport system, permease and ATPase components		CDS	Drugs-transport transmembrane ATP-binding protein ABC transporter			0	0	0	
hypothetical protein						FIG00823201: hypothetical protein			base_one HP	base_one HP	base_one miss	
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]	2.2.1.6	CDS	COG0028: Thiamine pyrophosphate-requiring enzymes			0	0	0	
accessory Sec system translocase SecA2		secA2	protein translocase subunit secA		CDS	Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)			gs-sh	gs-sh	gs-sh	
CDP-alcohol phosphatidyltransferase family protein			CDP-diacylglycerol-phosphatidylglycerol phosphatidyltransferase	2.7.8.5,2.7.8.-	CDS	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5		0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG030330: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein (small basic protein)		CDS	FIG025307: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Division initiation protein			base_one HP	base_one HP	0	
glycine cleavage system H protein		gcvH	glycine cleavage system H protein		CDS	Glycine cleavage system H protein			base_lit-s	lit-s	lit-s	
oxoglutarate dehydrogenase inhibitor		odhI	FOG: FHA domain		CDS	FIG00672531: hypothetical protein			gs-sh	0	0	
merR regulatory family protein			Predicted transcriptional regulators		CDS	"Transcriptional regulator, MerR family"			gs-sh	gs-sh	map	
bifunctional nuclease family protein			Uncharacterized conserved protein		CDS	hypothetical protein			0	base_one HP	base_one HP	
merR HTH regulatory family protein			Predicted transcriptional regulators		CDS	Uncharacterized HTH-type transcriptional regulator			gs-sh	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
glycine dehydrogenase	1.4.4.2	gcvP	glycine dehydrogenase (decarboxylating) alpha subunit/glycine dehydrogenase (decarboxylating) beta subunit	1.4.4.2,1.4.4.2, 1.4.4.2	CDS	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein)	1.4.4.2		base_tigr	base_ec	base_ec-d	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.8.1.5	CDS	Haloalkane dehalogenase 2	3.8.1.5		0	0	base_ec	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Hydrolase			0	0	0	
hydrolase CocE/NonD family protein			putative hydrolase, CocE/NonD family		CDS	Glutaryl-7-ACA acylase			base_tigr	0	0	
bacterial extracellular solute-binding family protein			Bacterial extracellular solute-binding protein./von Willebrand factor type A domain.		CDS	FIG00996932: hypothetical protein			0	0	0	
malate synthase G	2.3.3.9	glcB	malate synthase (EC 2.3.3.9)	2.3.3.9	CDS	Malate synthase G	2.3.3.9		base_tigr	base_ec	base_ec	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821467: hypothetical protein			pfam-sh	0	0	
putative predicted protein									base_one miss	base_one miss	base_both miss	
putative dNA-binding protein			hypothetical protein		CDS	FIG034581: hypothetical protein			base_one HP	0	base_one HP	
PE family protein			hypothetical protein		CDS	PE family protein			base_one HP	base_lit-s	base_one HP	
CBS domain protein			Hemolysins and related proteins containing CBS domains		CDS	Magnesium and cobalt efflux protein CorC			pfam-sh	map	gs-sh	
transporter associated domain protein			Hemolysins and related proteins containing CBS domains		CDS	Magnesium and cobalt efflux protein CorC			0	0	gs-sh	
nitronate monooxygenase family protein			IMP dehydrogenase family protein	1.1.1.205	CDS	Inosine-5'-monophosphate dehydrogenase	1.1.1.205		0	0	base_ec	
6-phosphogluconate dehydrogenase	1.1.1.44	gnd	6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)	1.1.1.44	CDS	"6-phosphogluconate dehydrogenase, decarboxylating"	1.1.1.44		base_tigr	base_ec	base_ec	
peptidase M48 family protein			Zn-dependent protease with chaperone function		CDS	"Peptidase M48, Ste24p precursor"			0	tf_idf	0	
transcriptional regulator BlaI		blaI	Predicted transcriptional regulator		CDS	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN			gs-sh	orth	map	
putative esterase Rv1847/MT1895			uncharacterized domain 1		CDS	Putative esterase			orth	0	0	
urease, gamma subunit	3.5.1.5	ureA	urease, gamma subunit	3.5.1.5	CDS	Urease gamma subunit	3.5.1.5		base_lit-s	base_ec	base_ec	
urease, beta subunit	3.5.1.5	ureB	urease, beta subunit	3.5.1.5	CDS	Urease beta subunit	3.5.1.5		base_lit-s	base_ec	base_ec	
urease, alpha subunit	3.5.1.5	ureC	urease. Metallo peptidase. MEROPS family M38	3.5.1.5	CDS	Urease alpha subunit	3.5.1.5		base_tigr	base_ec	base_ec	
ureF family protein			Urease accessory protein UreF		CDS	Urease accessory protein UreF			gs-sh	gs-sh	base_lit-s	
urease accessory protein UreG		ureG	urease accessory protein UreG		CDS	Urease accessory protein UreG			base_lit-s	lit-s	lit-s	
ureD urease accessory family protein			Urease accessory protein UreH		CDS	Urease accessory protein UreD			gs-sh	lit-s	gs-sh	
glucose inhibited division A family protein			NADH dehydrogenase, FAD-containing subunit	1.6.99.3	CDS	NADH dehydrogenase	1.6.99.3		0	0	base_ec	
putative F420-dependent oxidoreductase, Rv1855c family protein			probable F420-dependent oxidoreductase, Rv1855c family		CDS	Oxidoreductase			base_tigr	0	0	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"			0	0	0	
molybdate ABC transporter, periplasmic molybdate-binding protein		modA	molybdenum ABC transporter, periplasmic molybdate-binding protein		CDS	"Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)"			base_tigr	gs-sh	gs-sh	
molybdate ABC transporter, permease protein		modB	molybdate ABC transporter, permease protein		CDS	Molybdenum transport system permease protein ModB (TC 3.A.1.8.1)			base_lit-s	gs-sh	map	
ABC transporter family protein			ABC-type sulfate/molybdate transport systems, ATPase component	3.6.3.29	CDS	Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)			0	0	gs-sh	
alanine and proline-rich secreted protein apa		apa	Fibronectin-attachment protein (FAP).		CDS	"Alanine and proline-rich secreted protein Apa, fibronectin attachment protein"			gs-sh	0	0	
transglycosylase associated family protein			Predicted membrane protein		CDS	Possible membrane protein			0	0	lit-s	
zinc-binding alcohol dehydrogenase family protein	1.-.-.-		zinc-binding alcohol dehydrogenase family protein	1.1.1.1	CDS	Alcohol dehydrogenase	1.1.1.1		base_lit-s	tf_idf	base_ec	
CAAX protease self-immunity family protein			Predicted protease of the Abi (CAAX) family		CDS	Possible membrane protein			0	0	0	
MOSC domain protein			Uncharacterized protein conserved in bacteria		CDS	Uncharacterized protein conserved in bacteria			0	0	base_lit-s	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"			0	0	0	
coA-transferase III family protein			Predicted acyl-CoA transferases/carnitine dehydratase		CDS	Acyl-CoA transferases/carnitine dehydratase			0	0	lit-s	
putative acetyl-CoA acetyltransferase			hypothetical protein	2.3.1.9	CDS	Acetyl-CoA acetyltransferase			base_one HP	lit-s	base_one HP	
NAD dependent epimerase/dehydratase family protein			Nucleoside-diphosphate-sugar epimerases		CDS	Phosphoenolpyruvate synthase	2.7.9.2		0	0	0	
pyridine nucleotide-disulfide oxidoreductase family protein			NAD(P)H-nitrite reductase		CDS	putative reductase( EC:1.- )			orth	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820353: hypothetical protein			lit-s	base_one HP	base_one HP	
deazaflavin-dependent oxidoreductase, nitroreductase family protein			deazaflavin-dependent nitroreductase family protein		CDS	FIG00820081: hypothetical protein			base_tigr	0	0	
nitronate monooxygenase family protein			L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases	1.1.2.3	CDS	L-lactate dehydrogenase	1.1.2.3		0	0	base_ec	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	NTP pyrophosphohydrolases including oxidative damage repair enzymes			base_one HP	base_one HP	0	
ethD domain protein			EthD domain.		CDS	FIG00820973: hypothetical protein			lit-s	0	0	
PPOX class putative F420-dependent enzyme family protein			PPOX class probable F420-dependent enzyme		CDS	Pyridoxine 5'-phosphate oxidase			base_tigr	0	0	
						FIG00820183: hypothetical protein			base_both miss	base_one miss	base_one miss	
bacterioferritin		bfr	bacterioferritin		CDS	Bacterioferritin (BFR)			base_lit-s	gs-sh	map	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	EmrB/QacA family drug resistance transporter			0	0	0	
glutamine synthetase, catalytic domain protein			Glutamine synthetase	6.3.1.2	CDS	"Glutamine synthetase, putative"	6.3.1.2		tf_idf	tf_idf	base_ec	
amidohydrolase family protein			Predicted metal-dependent hydrolase of the TIM-barrel fold		CDS	Amidohydrolase			0	lit-s	0	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 140			lit-s	tf_idf	tf_idf	
mycobacterium 19 kDa lipoantigen family protein			hypothetical protein		CDS	Lipoprotein LppE			base_one HP	0	base_one HP	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	Probable short-chain type dehydrogenase/reductase	1.1.-.-		0	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00820653: hypothetical protein			lit-s	0	0	
transglycosylase-like domain protein			Transglycosylase-like domain.		CDS	Resuscitation-promoting factor RpfC			lit-s	0	0	
putative chorismate mutase			chorismate mutase, putative	5.4.99.5	CDS	Periplasmic chorismate mutase I precursor	5.4.99.5		base_tigr	map	base_ec	
antigen 85-B	2.3.1.-	fbpB	Predicted esterase		CDS	"Esterase, secreted fibronectin-binding protein antigen 85-B FbpB"			gs-sh	0	0	
			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4389).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
			O-Methyltransferase involved in polyketide biosynthesis		CDS				base_one miss	base_both miss	base_one miss	
hypothetical protein						FIG00820450: hypothetical protein			base_one HP	base_one HP	base_one miss	
methyltransferase, TIGR00027 family protein	2.1.1.-		O-Methyltransferase involved in polyketide biosynthesis		CDS	O-methyltransferase			base_tigr	0	0	
yceI-like domain protein			Uncharacterized conserved protein		CDS	FIG00820863: hypothetical protein			gs-sh	0	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822024: hypothetical protein			lit-s	base_one HP	base_one HP	
nitronate monooxygenase family protein			Dioxygenases related to 2-nitropropane dioxygenase		CDS	2-nitropropane dioxygenase	1.13.11.32		0	0	0	
hypothetical protein						FIG00823385: hypothetical protein			base_one HP	base_one HP	base_one miss	
			methyltransferase, putative, TIGR00027 family		CDS				base_one miss	base_both miss	base_one miss	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	Threonine dehydrogenase and related Zn-dependent dehydrogenases			0	0	base_lit-s	
D-tyrosyl-tRNA(Tyr) deacylase	3.1.-.-	dtd	D-tyrosyl-tRNA(Tyr) deacylase	3.1.-	CDS	D-tyrosyl-tRNA(Tyr) deacylase			base_lit-s	base_lit-s	base_lit-s	
macro domain protein			Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1		CDS	Lipoprotein LppD			0	0	0	
conserved hypothetical protein			uncharacterized protein, MTH1187 family		CDS	ExtraCellular Mutant; Ecm15p			base_one HP	base_one HP	0	
putative LIGNIN PEROXIDASE LIPJ			Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	lignin peroxidase LipJ			0	lit-s	0	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
competence/damage-inducible CinA C-terminal domain protein			competence/damage-inducible protein cinA		CDS	"Molybdopterin binding motif, CinA N-terminal domain / C-terminal domain of CinA type S"			lit-s	pfam-sh	gs-sh	
H+ symporter family protein			putative sialic acid transporter		CDS	Sialic acid-transport integral membrane protein NanT			base_tigr	0	0	
conserved hypothetical protein			Predicted membrane protein		CDS	Possible membrane protein			base_one HP	base_one HP	lit-s	
anti-anti-sigma factor family protein			anti-anti-sigma factor		CDS	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV			base_tigr	0	0	
FAD binding domain protein			D-amino-acid:oxygen oxidoreductase (deaminating) (EC: 1.4.3.3)	1.4.3.3	CDS	D-amino-acid oxidase	1.4.3.3		0	0	base_ec	
putative conserved membrane protein			hypothetical protein		CDS	FIG00823749: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4262).		CDS	FIG042201: hypothetical protein			base_one HP	base_one HP	lit-s	
catalase/peroxidase HPI	1.11.1.6	katG	catalase/peroxidase HPI	1.11.1.21	CDS	Catalase / Peroxidase	1.11.1.6, 1.11.1.7		base_lit-s	base_ec-d	base_ec-d	
ferric uptake regulator family protein			Fe2+/Zn2+ uptake regulation proteins		CDS	"Transcriptional regulator, FUR family"			0	0	0	
phosphatidylethanolamine-binding family protein			Phospholipid-binding protein		CDS	Phosphatidylethanolamine-binding protein			map	lit-s	orth	
phosphatidylethanolamine-binding family protein			phospholipid-binding protein, PBP family		CDS	Phosphatidylethanolamine-binding protein			0	lit-s	0	
zinc-binding dehydrogenase family protein			NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	Oxidoreductase FadB5			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820307: hypothetical protein			lit-s	base_one HP	base_one HP	
metallo-beta-lactamase superfamily protein						Fumarylacetoacetase	3.7.1.2		base_one miss	0	base_one miss	
isocitrate lyase family protein			Isocitrate lyase	4.1.3.1	CDS	"Isocitrate lyase, group III, Mycobacterial type ICL2"	4.1.3.1		lit-s	map	base_ec	
isocitrate lyase family protein			Isocitrate lyase		CDS	"Isocitrate lyase, group III, Mycobacterial type ICL2"	4.1.3.1		lit-s	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00823285: hypothetical protein			lit-s	0	0	
diacylglycerol acyltransferase family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	Acyltransferase family protein			0	0	orth	
haloacid dehalogenase-like hydrolase family protein			Phosphoserine phosphatase		CDS	Lipoprotein LppF			0	0	0	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		0	0	0	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Lipase LipD			0	0	0	
putative membrane protein			hypothetical protein		CDS	FIG00827133: hypothetical protein			base_one HP	0	base_one HP	
long-chain-fatty-acid--AMP ligase FadD32	6.2.1.-	fadD32	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	gs-sh	map	
immunogenic protein MPT63		mpt63	Domain of unknown function (DUF1942).		CDS	Immunogenic protein MPT63/MPB63 precursor			gs-sh	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Putative uncharacterized protein BCG_1966			base_one HP	base_one HP	0	
sorbose reductase SOU1	1.1.1.289	SOU1	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Probable short-chain type dehydrogenase/reductase	1.-.-.-		gs-sh	0	0	
conserved hypothetical protein						FIG00821384: hypothetical protein			base_one HP	base_one HP	base_one miss	
amidotransferase family protein			Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain		CDS	ThiJ/PfpI family protein			0	0	gs-sh	
bacterial regulatory helix-turn-helix s, AraC family protein			Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain		CDS	"Transcriptional regulator, AraC family"			pfam-sh	pfam-sh	pfam-sh	
putative tRANSCRIPTIONAL REGULATORY PROTEIN			hypothetical protein		CDS	"Transcriptional regulator, AraC family"			base_one HP	orth	base_one HP	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Butyryl-CoA dehydrogenase	1.3.99.2		0	0	0	
putative thiol peroxidase			thiol peroxidase (atypical 2-Cys peroxiredoxin)	1.11.1.15,1.11.1.5	CDS	"Thiol peroxidase, Tpx-type"	1.11.1.15		0	tf_idf	base_ec-d	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Butyryl-CoA dehydrogenase	1.3.99.2		0	0	0	
putative enoyl-CoA hydratase domain protein			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		map	lit-s	base_ec	
luciferase-like monooxygenase family protein			Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases		CDS	Monooxygenase component A			0	0	0	
2Fe-2S iron-sulfur cluster binding domain protein			2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases		CDS	"Monooxygenase, FAD- and [2Fe-2S]-containing component B"			0	0	0	
alpha/beta hydrolase fold family protein			epoxide hydrolase. Serine peptidase. MEROPS family S33		CDS	Monooxygenase component C / Probable epoxide hydrolase EphB	3.3.2.9		0	0	0	
flavin reductase like domain protein			Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	Nitrilotriacetate monooxygenase component B	1.14.13.-		0	0	0	
3,4-dihydroxy-2-butanone 4-phosphate synthase family protein			3,4-dihydroxy-2-butanone 4-phosphate synthase	3.5.4.25, 4.1.99.12	CDS	"3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II"	4.1.99.12, 3.5.4.25		lit-s	0	base_ec-d	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short-chain type dehydrogenase-reductase			0	0	0	
toxin MazF5	3.1.-.-	mazF5	Growth inhibitor	3.1.-	CDS	"Death on curing protein, Doc toxin"			0	0	0	
antitoxin MazE5		mazE5	hypothetical protein		CDS	"Prevent host death protein, Phd antitoxin"			base_one HP	0	base_one HP	
SEC-C motif family protein			SEC-C motif.		CDS	FIG033348: hypothetical protein			lit-s	0	0	
HNH endonuclease family protein			Domain of unknown function (DUF222)./HNH endonuclease.		CDS	Partial REP13E12 repeat protein			pfam-sh	0	0	
hypothetical protein			hypothetical protein		CDS	FIG00822138: hypothetical protein			base_lit-s	base_one HP	base_one HP	
helicase domain protein			hypothetical protein		CDS	FIG00820712: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820058: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG032369: hypothetical protein			lit-s	base_one HP	base_one HP	
putative transmembrane protein			hypothetical protein		CDS	FIG032435: hypothetical protein			base_one HP	0	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00830660: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Plasmid stability protein		CDS	FIG00820949: hypothetical protein			base_one HP	base_one HP	0	
putative ribonuclease VapC14			hypothetical protein		CDS	FIG00821374: hypothetical protein			base_one HP	0	base_one HP	
yjzC-like family protein			YjzC-like protein.		CDS	FIG00820722: hypothetical protein			lit-s	0	0	
toxin HigB		higB	Phage-related protein		CDS	FIG00822499: hypothetical protein			gs-sh	0	0	
antitoxin HigA		higA	Predicted transcriptional regulator with C-terminal CBS domains		CDS	Possible transcriptional regulatory protein			gs-sh	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821415: hypothetical protein			lit-s	base_one HP	base_one HP	
putative predicted protein						FIG00820831: hypothetical protein			base_one miss	lit-s	base_one miss	
conserved hypothetical protein						FIG00831360: hypothetical protein			base_one HP	base_one HP	base_one miss	
toxin ParE1		parE1	Plasmid stabilization system protein		CDS	plasmid stabilization protein ParE			0	0	gs-sh	
antitoxin ParD1		parD1	putative addiction module antidote protein, CC2985 family		CDS	Antitoxin ParD1			0	lit-s	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
putative ribonuclease VapC35			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00820878: hypothetical protein			0	0	0	
prevent-host-death family protein			prevent-host-death family protein		CDS	FIG00823469: hypothetical protein			base_lit-s	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional repressor Mce3R, TetR family"			gs-sh	gs-sh	pfam-sh	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1A			0	0	0	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1B			0	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1A			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1B			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1C			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1D			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1F			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821219: hypothetical protein			lit-s	base_one HP	base_one HP	
putative conserved Mce associated membrane protein			hypothetical protein		CDS	MCE associated membrane protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	FIG00820120: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821319: hypothetical protein			lit-s	base_one HP	base_one HP	
yacP-like NYN domain protein			YacP-like NYN domain.		CDS	FIG00820804: hypothetical protein			lit-s	0	0	
peptidase M48 family protein			Zn-dependent protease with chaperone function		CDS	Zn-dependent protease with chaperone function			0	0	base_lit-s	
amino acid permease family protein			amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Amino acid permease			0	lit-s	0	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	FIG00822747: hypothetical protein			0	0	0	
immunogenic protein MPT64		mpt64	Protein of unknown function (DUF3298).		CDS	Immunogenic protein MPT64/MPB64 precursor			gs-sh	0	0	
ribonucleoside-diphosphate reductase subunit beta nrdF1	1.17.4.1	nrdF1	ribonucleoside-diphosphate reductase class Ib beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	"Ribonucleotide reductase of class Ib (aerobic), beta subunit"	1.17.4.1		base_ec	base_ec	base_ec	
PIN domain protein			Uncharacterized protein conserved in bacteria		CDS	"Toxin 1, PIN domain"			0	pfam-sh	0	
rv0623-like transcription factor family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00824259: hypothetical protein			0	0	lit-s	
cutinase family protein			Type IV secretory pathway, VirJ component	3.1.1.74	CDS	Cutinase precursor Cfp21	3.1.1.74		0	0	base_ec	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00821477: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			transcriptional regulator, ArgP family		CDS	HTH-type transcriptional regulator			base_one HP	base_one HP	0	
L-lysine exporter family protein		lysE	L-lysine exporter		CDS	"Transporter, LysE family"			base_tigr	0	0	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00823549: hypothetical protein			base_lit-s	base_one HP	base_one HP	
methyltransferase domain protein			Dimethyladenosine transferase (rRNA methylation)		CDS	rRNA adenine N-6-methyltransferase	2.1.1.48		0	0	gs-sh	
RES domain protein			Uncharacterized conserved protein		CDS	FIG00820930: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF2384).		CDS	FIG036251: Hypothetical protein			base_one HP	base_one HP	lit-s	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821945: hypothetical protein			lit-s	base_one HP	base_one HP	
mRNA interferase MazF6	3.1.-.-	mazF6	Growth inhibitor	3.1.-	CDS				0	base_one miss	base_one miss	
hypothetical protein						FIG00820798: hypothetical protein			base_one HP	base_one HP	base_one miss	
antitoxin MazE6		mazE6	hypothetical protein		CDS	Programmed cell death antitoxin YdcD			base_one HP	0	base_one HP	
cadmium-translocating P-type ATPase	3.6.3.3	cadA	heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase	3.6.3.-	CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		gs-sh	base_ec-d	0	
conserved hypothetical protein			Protein of unknown function (DUF1490).		CDS	FIG00821195: hypothetical protein			base_one HP	base_one HP	lit-s	
HTH-type transcriptional regulator CmtR		cmtR	transcriptional regulator, ArsR family		CDS	"Transcriptional regulator, ArsR family"			gs-sh	gs-sh	lit-s	
hemerythrin HHE cation binding domain protein			Uncharacterized conserved protein		CDS	FIG00820119: hypothetical protein			0	0	lit-s	
universal stress protein Rv1996/MT2052			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	0	0	
putative cation-transporting ATPase F			ATPase, P-type (transporting), HAD superfamily, subfamily IC	3.6.3.-	CDS	Probable cation-transporting ATPase F	3.6.3.-		map	lit-s	orth	
phosphoenolpyruvate phosphomutase family protein			PEP phosphonomutase and related enzymes		CDS	PEP phosphonomutase and related enzymes			0	0	base_lit-s	
amino acid permease family protein			amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Uncharacterized transporter Rv1999c/MT2055			0	0	0	
NAD(P)-binding Rossmann-like domain protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes		CDS	FIG029313: hypothetical protein Rv2000/MT2056			0	0	0	
acyl-ACP thioesterase family protein			Acyl-ACP thioesterase		CDS	"Acyl-ACP thioesterase, FatA"			lit-s	pfam-sh	pfam-sh	
3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase	1.1.1.53	fabG3	Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.53	CDS	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase	1.1.1.53		base_ec	base_lit-s	base_ec	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	FIG147732: hypothetical protein Rv2003c/MT2059			0	0	0	
putative phosphoenolpyruvate synthase			hypothetical protein		CDS	Phosphoenolpyruvate synthase	2.7.9.2		base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG037390: hypothetical protein Rv2004c/MT2060			base_one HP	base_one HP	tf_idf	
universal stress protein Rv2005c/MT2061			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	0	0	
trehalose-phosphatase	3.1.3.12	otsB	trehalose 6-phosphatase	3.2.1.28,3.1.3.12	CDS	PROBABLE TREHALOSE-6-PHOSPHATE PHOSPHATASE OTSB1 (TREHALOSE-PHOSPHATASE) (TPP)( EC:3.2.1.28 )			base_ec-d	0	0	
ferredoxin		fdxA	Ferredoxin		CDS	FdxA			lit-s	gs-sh	map	
conserved hypothetical protein			Predicted ATPase (AAA+ superfamily)		CDS	AAA family ATPase			base_one HP	base_one HP	lit-s	
antitoxin VapB15		vapB15	Transcription regulator of the Arc/MetJ class		CDS	FIG00821114: hypothetical protein			0	0	0	
putative ribonuclease VapC15			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Toxin 1, PIN domain"			0	0	pfam-sh	
hypothetical protein						hypothetical protein			base_one HP	base_lit-s	base_one HP	
marR family protein			Transcriptional regulators		CDS	"Transcriptional regulator, MarR family"			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Phage envelope protein		CDS	FIG00821333: hypothetical protein			base_one HP	base_one HP	0	
putative helicase						putative helicase			base_one miss	base_lit-s	base_one miss	
hypothetical protein						FIG00821066: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative predicted protein									base_one miss	base_one miss	base_both miss	
						FIG00823619: hypothetical protein			base_both miss	base_one miss	base_one miss	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
transposase IS116/IS110/IS902 family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
HNH endonuclease family protein			Domain of unknown function (DUF222)./HNH endonuclease.		CDS	"Transcriptional regulator, IclR family"			pfam-sh	map	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820622: hypothetical protein			lit-s	base_one HP	base_one HP	
helix-turn-helix family protein			Predicted Zn peptidase		CDS	Zn peptidase with DNA binding			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00821748: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823439: hypothetical protein			lit-s	base_one HP	base_one HP	
putative type III restriction protein res subunit			hypothetical protein		CDS	Putative helicase			base_one HP	0	base_one HP	
helix-turn-helix family protein			Predicted transcriptional regulators		CDS	"Transcriptional regulator, XRE family"			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00821878: hypothetical protein			base_lit-s	base_one HP	base_one HP	
restriction endonuclease family protein			Predicted helicase		CDS	putative helicase			0	0	lit-s	
cation diffusion facilitator transporter family protein			cation diffusion facilitator family transporter		CDS	Cobalt-zinc-cadmium resistance protein			base_tigr	map	orth	
universal stress protein MSMEG_3950			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	0	0	
response regulator	2.7.13.3	devS	GAF domain./Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.		CDS	Histidine kinase response regulator			gs-sh	0	0	
universal stress family protein			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	lit-s	0	
putative phosphofructokinase pfkB			6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	Tagatose-6-phosphate kinase / 1-phosphofructokinase	2.7.1.144, 2.7.1.56		gs-sh	0	base_ec-d	
phosphoribosyl transferase domain protein			Erythromycin esterase homolog		CDS	Erythromycin esterase homolog			0	0	base_lit-s	
alpha-crystallin		hspX	Molecular chaperone (small heat shock protein)		CDS	14 kDa antigen (16 kDa antigen) (HSP 16.3)			gs-sh	0	0	
nitroreductase family protein			Nitroreductase family.		CDS	"Dinucleotide-utilizing enzyme, Rv2032/acg (acr-coregulated gene)"			lit-s	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3097).		CDS	FIG00820570: hypothetical protein			base_one HP	base_one HP	lit-s	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	"transcriptional regulator, ArsR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Putative uncharacterized protein BCG_2054			base_one HP	base_one HP	0	
conserved hypothetical protein			uncharacterized Actinobacterial protein TIGR03083		CDS	FIG00821723: hypothetical protein			base_one HP	base_one HP	0	
patatin-like phospholipase family protein			Predicted esterase of the alpha-beta hydrolase superfamily		CDS	lysophospholipase-like family protein			0	0	0	
ABC transporter family protein			carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)"			0	tf_idf	0	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	Probable sugar-transport integral membrane protein ABC transporter			0	0	0	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	Probable sugar-transport integral membrane protein ABC transporter			0	0	0	
bacterial extracellular solute-binding family protein			carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	Probable sugar-binding lipoprotein			0	0	0	
snoaL-like domain protein			Nuclear transport factor 2 (NTF2) domain.		CDS	hypothetical protein			0	base_one HP	base_one HP	
isochorismatase family protein			Amidases related to nicotinamidase	3.5.1.-, 3.5.1.19	CDS	Nicotinamidase	3.5.1.19		0	0	0	
conserved hypothetical protein			Protein of Unknown function (DUF2784).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
alpha/beta hydrolase fold family protein			Carboxylesterase type B	3.1.1.-	CDS	Probable carboxylesterase LipT	3.1.1.-		0	0	orth	
putative lppI protein			hypothetical protein		CDS	Probable lipoprotein lppI			base_one HP	gs-sh	base_one HP	
short chain dehydrogenase family protein			Nucleoside-diphosphate-sugar epimerases		CDS	Phosphoenolpyruvate synthase	2.7.9.2		0	0	0	
malonyl CoA-acyl carrier protein transacylase	2.3.1.39	fabD	KR domain./Acyl transferase domain./Beta-ketoacyl synthase, C-terminal domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		gs-sh	base_ec	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822025: hypothetical protein			lit-s	base_one HP	base_one HP	
glycosyl transferase 2 family protein			apolipoprotein N-acyltransferase	2.3.1.-	CDS	Apolipoprotein N-acyltransferase in lipid-linked oligosaccharide synthesis cluster / Dolichol-phosphate mannosyltransferase in lipid-linked oligosaccharide synthesis cluster	2.3.1.-, 2.4.1.83		0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4109).		CDS	FIG00820327: hypothetical protein			base_one HP	base_one HP	lit-s	
amidohydrolase family protein			Predicted metal-dependent hydrolase with the TIM-barrel fold		CDS	Exoenzymes regulatory protein AepA in lipid-linked oligosaccharide synthesis cluster			0	0	0	
fxsA cytoplasmic membrane family protein			Protein affecting phage T7 exclusion by the F plasmid		CDS	Cytoplasmic membrane protein FsxA			gs-sh	0	0	
dienelactone hydrolase family protein			Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	Dienelactone hydrolase family protein			lit-s	lit-s	lit-s	
ribosomal protein S18		rpsR	SSU ribosomal protein S18P		CDS	"SSU ribosomal protein S18p @ SSU ribosomal protein S18p, zinc-independent"			base_tigr	0	0	
30S ribosomal protein S14		rpsN	SSU ribosomal protein S14P		CDS	30S ribosomal protein S14			gs-sh	base_lit-s	map	
ribosomal protein L33		rpmG	LSU ribosomal protein L33P		CDS	"LSU ribosomal protein L33p @ LSU ribosomal protein L33p, zinc-independent"			base_tigr	0	0	
ribosomal protein L28		rpmB	LSU ribosomal protein L28P		CDS	LSU ribosomal protein L28p			base_tigr	map	lit-s	
adhesion domain protein						FIG00821360: hypothetical protein			base_one miss	0	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			ABC-type Mn2+/Zn2+ transport systems, permease components		CDS				base_one miss	base_both miss	base_one miss	
PPOX class putative F420-dependent enzyme, Rv2061 family protein	1.-.-.-		PPOX class probable F420-dependent enzyme, Rv2061 family		CDS	FIG00995176: hypothetical protein			base_tigr	0	0	
periplasmic solute binding family protein						"Zinc ABC transporter, periplasmic-binding protein ZnuA"			base_one miss	0	base_one miss	
cobaltochelatase, CobN subunit	6.6.1.2	cobN	cobaltochelatase CobN subunit (EC 6.6.1.2)	6.6.1.2	CDS	CobN component of cobalt chelatase involved in B12 biosynthesis			base_tigr	gs-sh	gs-sh	
putative antitoxin MazE7			hypothetical protein		CDS	Programmed cell death antitoxin YdcD			base_one HP	0	base_one HP	
toxin MazF7	3.1.-.-	mazF7				Programmed cell death toxin YdcE			base_one miss	0	base_one miss	
precorrin-3B synthase	1.14.13.83	cobG	precorrin-3B synthase	1.14.13.83	CDS	Cobalamin biosynthesis protein CobG			base_lit-s	0	0	
precorrin-8X methylmutase family protein			precorrin-8X methylmutase (EC 5.4.1.2)	5.4.1.2	CDS	Cobalt-precorrin-8x methylmutase	5.4.1.2		lit-s	map	base_ec	
			Methyltransferase domain.		CDS				base_one miss	base_both miss	base_one miss	
precorrin-2 C20-methyltransferase	2.1.1.130	cobI	precorrin-3 methyltransferase/precorrin-2 C20-methyltransferase/cobalt-factor II C20-methyltransferase	2.1.1.131, 2.1.1.130,2.1.1.131, 2.1.1.130, 2.1.1.151	CDS	Cobalt-precorrin-2 C20-methyltransferase / Cobalt-precorrin-3b C17-methyltransferase	2.1.1.130		base_ec-d	base_ec	base_ec-d	
beta-lactamase FAR-1	3.5.2.6	bla	Beta-lactamase class A	3.5.2.6	CDS	Beta-lactamase class A			base_ec	gs-sh	base_lit-s	
precorrin-6x reductase	1.3.1.54	cobK	precorrin-6A reductase (EC 1.3.1.54)	1.3.1.54	CDS	Cobalt-precorrin-6x reductase	1.3.1.54		base_tigr	base_ec	base_ec	
putative RNA polymerase sigma-C factor			RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma-54 factor RpoN			0	0	gs-sh	
precorrin-4 C11-methyltransferase	2.1.1.133	cobM	precorrin-4 C11-methyltransferase (EC 2.1.1.133)	2.1.1.133	CDS	Cobalt-precorrin-4 C11-methyltransferase	2.1.1.133		base_tigr	base_ec	base_ec	
precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit	2.1.1.132	cbiT	precorrin-6Y C5,15-methyltransferase (decarboxylating)	1.-, 2.1.1.132,2.1.1.132	CDS	Cobalt-precorrin-6y C5-methyltransferase / Cobalt-precorrin-6y C15-methyltransferase [decarboxylating]	2.1.1.-, 2.1.1.-		gs-sh	0	0	
short chain dehydrogenase family protein			Short-chain dehydrogenases of various substrate specificities		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"			0	0	0	
conserved hypothetical protein			PPOX class probable F420-dependent enzyme		CDS	FIG01000472: hypothetical protein			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822116: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823547: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00823030: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF2563).		CDS	FIG00822376: hypothetical protein			base_one HP	base_one HP	lit-s	
alpha/beta hydrolase family protein			Uncharacterized protein involved in exopolysaccharide biosynthesis		CDS	FIG033455: hypothetical protein			0	0	0	
putative lipoprotein lppJ			hypothetical protein		CDS	Lipoprotein LppJ			base_one HP	lit-s	base_one HP	
conserved hypothetical protein						FIG031423: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	POSSIBLE MEMBRANE PROTEIN			lit-s	base_one HP	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG031423: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG036988: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821033: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00821326: hypothetical protein			base_one HP	base_one HP	base_one miss	
HTH-like domain protein			HTH-like domain.		CDS	putative transposase			lit-s	0	0	
kinase domain protein			PknH-like extracellular domain./Protein kinase domain.	2.7.11.1	CDS	Serine/threonine protein kinase PknJ	2.7.11.1		map	tf_idf	base_ec	
metallopeptidase M24 family protein			Xaa-Pro aminopeptidase	3.4.13.-	CDS	Probable dipeptidase PepE	3.4.13.-		0	0	gs-sh	
5'-3' exonuclease, C-terminal SAM fold family protein			5'-3' exonuclease (including N-terminal domain of PolI)		CDS	putative 5'-3' exonuclease			0	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4333).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
DEAD/DEAH box helicase family protein			Superfamily II RNA helicase	3.6.4.-	CDS	FIG005666: putative helicase			0	tf_idf	0	
twin arginine-targeting protein translocase TatC		tatC	Twin arginine targeting (Tat) protein translocase TatC		CDS	Twin-arginine translocation protein TatC			base_tigr	pfam-sh	pfam-sh	
twin arginine-targeting translocase, TatA/E family protein		tatA	twin arginine-targeting protein translocase, TatA/E family		CDS	Twin-arginine translocation protein TatA			base_tigr	gs-sh	gs-sh	
protein pafC		pafC	Predicted transcriptional regulator		CDS	FIG019733: possible DNA-binding protein			gs-sh	0	0	
protein pafB		pafB	Predicted transcriptional regulator		CDS	FIG005453: Putative DeoR-family transcriptional regulator			gs-sh	gs-sh	gs-sh	
proteasome accessory factor PafA	6.3.2.-	pafA	proteasome accessory factor PafA	6.3.2.-	CDS	"Pup ligase PafA, possible component of postulated heterodimer PafA-PafA'"			base_lit-s	0	0	
hypothetical protein			hypothetical protein		CDS	FIG033545: PE-PGRS family protein			base_lit-s	base_one HP	base_one HP	
PE family protein			PE family.		CDS	FIG033545: PE-PGRS family protein			lit-s	0	0	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	FIG034520: hypothetical protein			base_one HP	base_one HP	lit-s	
helicase conserved C-terminal domain protein			Superfamily II DNA/RNA helicases, SNF2 family		CDS	"Helicase, SNF2/RAD54 family"			0	0	pfam-sh	
putative ribonuclease VapC37			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00822827: hypothetical protein			0	0	0	
SWIM zinc finger family protein			Uncharacterized conserved protein		CDS	FIG006557: hypothetical protein			0	0	lit-s	
putative copG DNA-binding domain protein			hypothetical protein		CDS	FIG00820845: hypothetical protein			base_one HP	0	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00823214: hypothetical protein			base_lit-s	base_one HP	base_one HP	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
conserved hypothetical protein			PPE family.		CDS	PPE family protein			base_one HP	base_one HP	lit-s	
proteasome, alpha subunit	3.4.25.1	prcA	proteasome, alpha subunit, bacterial type	3.4.25.1	CDS	"Proteasome subunit alpha, bacterial"	3.4.25.1		base_tigr	base_ec	base_ec	
proteasome, beta subunit	3.4.25.1	prcB	proteasome endopeptidase complex, beta component (EC 3.4.25.1). Threonine peptidase. MEROPS family T01B	3.4.25.1	CDS	"Proteasome subunit beta, bacterial"	3.4.25.1		base_tigr	base_ec	base_ec	
prokaryotic ubiquitin-like protein Pup		pup	ubiquitin-like protein Pup		CDS	Prokaryotic ubiquitin-like protein Pup			gs-sh	lit-s	map	
proteasome accessory factor PafA2	6.3.2.-		proteasome accessory factor PafA2	6.3.2.-	CDS	"Pup ligase PafA' paralog, possible component of postulated heterodimer PafA-PafA'"			base_lit-s	0	0	
						FIG00822881: hypothetical protein			base_both miss	base_one miss	base_one miss	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821521: hypothetical protein			lit-s	base_one HP	base_one HP	
proteasome ATPase	3.6.4.8	arc	proteasome ATPase		CDS	Bacterial proteasome-activating AAA-ATPase (PAN)			base_lit-s	0	0	
putative lipoprotein lppK			hypothetical protein		CDS	Probable conserved lipoprotein lppK			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	YlxP-like protein			base_one HP	base_one HP	0	
tRNA (adenine-N(1)-)-methyltransferase TrmI		trmI	tRNA (adenine-58-N(1)-) methyltransferase	2.1.1.36	CDS	RNA methyltransferase			gs-sh	0	0	
conserved hypothetical protein			RecB family exonuclease		CDS	RecB family exonuclease			base_one HP	base_one HP	base_lit-s	
putative membrane protein			Predicted membrane protein		CDS	Hypothetical membrane protein Rv2120c			lit-s	0	0	
ATP phosphoribosyltransferase	2.4.2.17	hisG	ATP phosphoribosyltransferase (homohexameric) (EC 2.4.2.17)	2.4.2.17	CDS	ATP phosphoribosyltransferase	2.4.2.17		base_ec	base_lit-s	base_ec	
phosphoribosyl-ATP diphosphatase	3.6.1.31	hisE	phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)	3.6.1.31	CDS	Phosphoribosyl-ATP pyrophosphatase	3.6.1.31		base_tigr	base_ec	base_ec	
methionine synthase	2.1.1.13	metH	methionine synthase (B12-dependent) (EC 2.1.1.13)	2.1.1.13	CDS	5-methyltetrahydrofolate--homocysteine methyltransferase	2.1.1.13		base_ec	base_ec	base_ec	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein			Archaeal enzymes of ATP-grasp superfamily		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
hypothetical protein			hypothetical protein		CDS	PE_PGRS family protein			base_lit-s	base_one HP	base_one HP	
PE family protein			PE family.		CDS	FIG113212: hypothetical protein			lit-s	0	0	
amino acid permease family protein			asparagine:proton symporter, AAT family (TC 2.A.3.1.8)		CDS	L-asparagine permease			0	0	0	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"			0	0	0	
cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	6.3.1.13	mshC	cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	6.3.1.13	CDS	L-cysteine:1D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase MshC			base_lit-s	0	0	
3'-phosphoadenosine 5'-phosphate phosphatase	3.1.3.25	cysQ	3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7)	3.1.3.7	CDS	Protein cysQ homolog			base_ec-d	gs-sh	gs-sh	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
ribbon-helix-helix , copG family protein			Ribbon-helix-helix protein, copG family.		CDS	"DNA-binding protein, CopG family"			lit-s	gs-sh	gs-sh	
phosphatidylinositol 3- and 4-kinase family protein			conserved hypothetical protein		CDS	Phosphatidylinositol 3-and 4-kinase family protein			base_one HP	0	base_one HP	
conserved hypothetical family protein			conserved hypothetical protein		CDS	FIG00820819: hypothetical protein			base_one HP	lit-s	base_one HP	
putative phosphomutase, MSMEG_4193 family protein			probable phosphomutase, MSMEG_4193 family		CDS	Phosphoglycerate mutase family			base_tigr	0	0	
undecaprenyl-diphosphatase UppP	3.6.1.27	uppP	Undecaprenyl-diphosphatase (EC 3.6.1.27)	3.6.1.27	CDS	Undecaprenyl-diphosphatase	3.6.1.27		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821698: hypothetical protein			lit-s	base_one HP	base_one HP	
NHL repeat family protein			hypothetical protein		CDS	Lipoprotein LppL			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821060: hypothetical protein			lit-s	base_one HP	base_one HP	
dihydroorotate dehydrogenase	1.3.98.1	pyrD	dihydroorotate oxidase A	1.3.98.1,1.3.3.1	CDS	Dihydroorotate dehydrogenase	1.3.3.1		base_tigr	base_ec-d	base_ec-d	
phosphatidylethanolamine-binding family protein			Raf kinase inhibitor-like protein, YbhB/YbcL family		CDS	Phospholipid-binding protein			0	0	0	
peptidase M20/M25/M40 family protein			Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases		CDS	FIG016551: Putative peptidase			0	0	0	
toxin ParE2		parE2	Plasmid stabilisation system protein.		CDS	FIG00823288: hypothetical protein			0	0	0	
conserved hypothetical protein			putative addiction module component, TIGR02574 family		CDS	FIG00823257: hypothetical protein			base_one HP	base_one HP	0	
phosphoribosyl transferase domain protein			Predicted phosphoribosyltransferases		CDS	Phosphoribosyl transferase domain protein			0	lit-s	0	
conserved hypothetical protein			hypothetical protein		CDS	Probable transmembrane protein			lit-s	base_one HP	base_one HP	
divIVA domain protein			DivIVA domain		CDS	"FIG055075: Possibly a cell division protein, antigen 84 in Mycobacteria"			base_tigr	0	0	
YGGT family protein			Predicted integral membrane protein		CDS	FIG021764: Possible membrane protein			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG021292: hypothetical protein			base_one HP	base_one HP	lit-s	
alanine racemase, N-terminal domain protein			pyridoxal phosphate enzyme, YggS family		CDS	"Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC"			0	0	0	
multi-copper polyphenol oxidoreductase laccase family protein			uncharacterized protein, YfiH family		CDS	COG1496: Uncharacterized conserved protein			0	0	0	
cell division protein FtsZ		ftsZ	cell division protein FtsZ		CDS	Cell division protein FtsZ	3.4.24.-		base_lit-s	lit-s	lit-s	
cell division FtsQ family protein			Cell division septal protein		CDS	Cell division protein FtsQ			gs-sh	lit-s	gs-sh	
UDP-N-acetylmuramate--alanine ligase	6.3.2.8	murC	UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)	6.3.2.8	CDS	UDP-N-acetylmuramate--alanine ligase	6.3.2.8		base_tigr	base_lit-s	base_ec	
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	2.4.1.227	murG	UDP-N-acetylglucosamine-N-acetylmuramylpentapeptide N-acetylglucosamine transferase	2.4.1.227	CDS	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	2.4.1.227		base_tigr	base_ec	base_ec	
cell division protein FtsW		ftsW	cell division-specific peptidoglycan biosynthesis regulator FtsW		CDS	Cell division protein FtsW			base_tigr	lit-s	gs-sh	
UDP-N-acetylmuramoylalanine--D-glutamate ligase	6.3.2.9	murD	UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)	6.3.2.9	CDS	UDP-N-acetylmuramoylalanine--D-glutamate ligase	6.3.2.9		base_tigr	base_lit-s	base_ec	
phospho-N-acetylmuramoyl-pentapeptide-transferase	2.7.8.13	mraY	Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13)	2.7.8.13	CDS	Phospho-N-acetylmuramoyl-pentapeptide-transferase	2.7.8.13		base_tigr	base_ec	base_ec	
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase family protein	6.3.2.10	murF	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC 6.3.2.10)	6.3.2.10	CDS	"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase"	6.3.2.10		base_tigr	base_ec	base_ec	
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase	6.3.2.13	murE	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC 6.3.2.13)	6.3.2.13	CDS	"UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase"	6.3.2.13		base_ec	base_ec	base_ec	
alkylhydroperoxidase AhpD family core domain protein			alkylhydroperoxidase AhpD family core domain		CDS	FIG038012: hypothetical protein			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	"Transcriptional regulator, TetR family"			lit-s	base_one HP	base_one HP	
putative F420-dependent oxidoreductase, Rv2161c family domain protein			probable F420-dependent oxidoreductase, Rv2161c family		CDS	Probable F420-dependent oxidoreductase family protein			base_tigr	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
penicillin binding transpeptidase domain protein			Cell division protein FtsI/penicillin-binding protein 2	2.4.1.129	CDS	Cell division protein FtsI [Peptidoglycan synthetase]	2.4.1.129		0	0	base_ec	
putative conserved proline rich membrane protein			hypothetical protein		CDS	FIG034299: proline rich membrane protein			base_one HP	lit-s	base_one HP	
S-adenosyl-methyltransferase MraW	2.1.1.-	mraW	S-adenosyl-methyltransferase MraW	2.1.1.199	CDS	rRNA small subunit methyltransferase H			base_lit-s	gs-sh	gs-sh	
protein MraZ		mraZ	mraZ protein		CDS	Cell division protein MraZ			lit-s	pfam-sh	gs-sh	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3040).		CDS	FIG017342: transmembrane protein			base_one HP	base_one HP	0	
acetyltransferase family protein			Acetyltransferases		CDS	Acetyltransferase	2.3.1.-		0	lit-s	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821173: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3153).		CDS	Lipoprotein LppM			base_one HP	base_one HP	0	
geranylgeranyl pyrophosphate synthase	2.5.1.1		Geranylgeranyl pyrophosphate synthase	2.5.1.29, 2.5.1.1, 2.5.1.10	CDS	Geranylgeranyl diphosphate synthase	2.5.1.29		base_ec-d	base_ec-d	base_ec-d	
putative regulatory protein			hypothetical protein		CDS	Conserved hypothetical regulatory protein			base_one HP	0	base_one HP	
putative membrane protein			carotene biosynthesis associated membrane protein	2.4.1.-	CDS	Carotene biosynthesis associated membrane protein			0	0	lit-s	
phosphotransferase enzyme family protein			serine/threonine protein kinase	2.7.11.1	CDS	Probable serine/threonine-protein kinase pknL	2.7.11.1		0	0	base_ec	
transposase IS116/IS110/IS902 family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
putative predicted protein						FIG00825588: hypothetical protein			base_one miss	lit-s	base_one miss	
3-deoxy-7-phosphoheptulonate synthase	2.5.1.54		3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54)	2.5.1.54	CDS	2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II	2.5.1.54		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
polyprenol-phosphate-mannose-dependent alpha-(1-2)-phosphatidylinositol mannoside mannosyltransferase	2.4.1.-		Protein of unknown function (DUF2029).	2.4.1.-	CDS	Possible membrane protein			0	0	0	
acyltransferase family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51	CDS	1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51		tf_idf	tf_idf	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821592: hypothetical protein			lit-s	base_one HP	base_one HP	
anion-transporting ATPase family protein			arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1)	3.6.3.16	CDS	Arsenical pump-driving ATPase	3.6.3.16		0	0	base_ec	
polyketide cyclase / dehydrase and lipid transport family protein			Oligoketide cyclase/lipid transport protein		CDS	hypothetical protein			0	base_one HP	base_one HP	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00995034: hypothetical protein			lit-s	0	0	
long-chain-fatty-acid--CoA ligase FadD15	6.2.1.3	fadD15	Long-chain acyl-CoA synthetases (AMP-forming)	6.2.1.3	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		base_ec	base_ec	base_ec	
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase	2.4.1.57	pimB	Glycosyltransferase	2.4.1.-	CDS	Poly(glycerol-phosphate) alpha-glucosyltransferase	2.4.1.52		gs-sh	base_ec-d	0	
peptidase MA superfamily protein			Peptidase MA superfamily.		CDS	FIG00821136: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			Cell wall-associated hydrolases (invasion-associated proteins)		CDS	Probable endopeptidase			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
			anthranilate phosphoribosyltransferase (EC 2.4.2.18)	2.4.2.18	CDS	Anthranilate phosphoribosyltransferase	2.4.2.18		base_one miss	base_one miss	base_ec	
exonuclease, DNA polymerase III, epsilon subunit family domain protein	2.7.7.7		exonuclease, DNA polymerase III, epsilon subunit family	2.7.7.7	CDS				base_tigr	base_one miss	base_one miss	
cytochrome c oxidase subunit 3	1.9.3.1	ctaE	Heme/copper-type cytochrome/quinol oxidase, subunit 3	1.9.3.1	CDS	Cytochrome c oxidase polypeptide III	1.9.3.1		base_ec	base_ec	base_ec	
menaquinol-cytochrome c reductase cytochrome c subunit		qcrC	menaquinol-cytochrome c reductase cytochrome c1 subunit precursor		CDS	"ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit"			gs-sh	0	0	
rieske [2Fe-2S] domain protein			menaquinol-cytochrome c reductase iron-sulfur subunit precursor		CDS	Ubiquinol-cytochrome C reductase iron-sulfur subunit	1.10.2.2		0	0	0	
cytochrome b(N-terminal)/b6/petB family protein			menaquinol-cytochrome c reductase cytochrome b subunit precursor		CDS	"Ubiquinol--cytochrome c reductase, cytochrome B subunit"	1.10.2.2		gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2561).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
mycobacterium membrane family protein			Mycobacterium membrane protein.		CDS	Putative membrane protein MmpS3			lit-s	0	0	
cytochrome c oxidase polypeptide 4	1.9.3.1	ctaF	Cytochrome c oxidase subunit IV.		CDS	Probable cytochrome c oxidase polypeptide 4	1.9.3.1		gs-sh	base_ec	map	
cytochrome c oxidase subunit 2	1.9.3.1	ctaC	Heme/copper-type cytochrome/quinol oxidases, subunit 2	1.9.3.1	CDS	Cytochrome c oxidase polypeptide II	1.9.3.1		base_ec	base_ec	base_ec	
asparagine synthase	6.3.5.4	asnB	asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4)	6.3.5.4	CDS	Asparagine synthetase [glutamine-hydrolyzing]	6.3.5.4		base_tigr	base_ec	base_ec	
pfkB carbohydrate kinase family protein			Sugar kinases, ribokinase family	2.7.1.20	CDS	Adenosine kinase	2.7.1.20		gs-sh	map	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
protein Rv2204c/MT2260			Iron-sulfur cluster assembly accessory protein		CDS	probable iron binding protein from the HesB_IscA_SufA family			0	0	0	
glycerate kinase family protein	2.7.1.31		Glycerate kinase	2.7.1.31	CDS	Glycerate kinase	2.7.1.31		base_tigr	base_ec	base_lit-s	
conserved hypothetical protein			Protein of unknown function (DUF3043).		CDS	"CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase"			base_one HP	base_one HP	0	
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	2.4.2.21	cobT	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)	2.4.2.21	CDS	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	2.4.2.21		base_tigr	base_ec	base_ec	
cobalamin-5-phosphate synthase family protein			cobalamin-5'-phosphate synthase (EC 2.7.8.26)	2.7.8.26	CDS	Cobalamin synthase			0	0	0	
conserved hypothetical protein						FIG00821894: hypothetical protein			base_one HP	base_one HP	base_one miss	
branched-chain amino acid aminotransferase	2.6.1.42	ilvE	branched-chain amino acid aminotransferase, group II	2.6.1.42	CDS	Branched-chain amino acid aminotransferase	2.6.1.42		base_tigr	base_ec	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
glycine cleavage system T protein	2.1.2.10	gcvT	aminomethyltransferase (EC 2.1.2.10)	2.1.2.10	CDS	Aminomethyltransferase (glycine cleavage system T protein)	2.1.2.10		base_tigr	base_ec	base_ec	
adenylate and Guanylate cyclase catalytic domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)		CDS	Adenylate cyclase	4.6.1.1		0	orth	0	
cytosol aminopeptidase family, catalytic domain protein			Leucyl aminopeptidase	3.4.11.1	CDS	Cytosol aminopeptidase PepA	3.4.11.1		map	tf_idf	base_ec	
short chain dehydrogenase family protein			Short-chain dehydrogenases of various substrate specificities		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"	1.1.1.-		0	0	0	
dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex	2.3.1.61	sucB	2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61)	2.3.1.61	CDS	Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	2.3.1.168		base_ec	base_ec-d	base_ec-d	
NAD dependent epimerase/dehydratase family protein			TIGR01777 family protein		CDS	Cell division inhibitor			0	0	0	
lipoyl(octanoyl) transferase	2.3.1.181	lipB	lipoate-protein ligase B	2.3.1.181	CDS	Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase			base_tigr	0	0	
lipoyl synthase	2.8.1.8	lipA	lipoate synthase	2.8.1.8	CDS	Lipoate synthase			base_tigr	gs-sh	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF4191).		CDS	"Transmembrane protein MT2276, clustered with lipoate gene"			base_one HP	base_one HP	0	
RDD family protein			RDD family.		CDS	PROBABLE MEMBRANE PROTEIN			lit-s	0	0	
glutamine synthetase, type I	6.3.1.2	glnA	L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	Glutamine synthetase type I	6.3.1.2		base_tigr	base_ec	base_ec	
glnD PII-uridylyltransferase family protein			Glutamine synthetase adenylyltransferase	2.7.7.42	CDS	Glutamate-ammonia-ligase adenylyltransferase	2.7.7.42		gs-sh	map	base_ec	
glutamine synthetase, type I	6.3.1.2	glnA	L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	Glutamine synthetase type I	6.3.1.2		base_tigr	base_ec	base_ec	
alpha/beta hydrolase fold family protein			tripeptidyl-peptidase B. Serine peptidase. MEROPS family S33		CDS	Putative hydrolase			0	0	0	
alpha/beta hydrolase fold family protein			tripeptidyl-peptidase B. Serine peptidase. MEROPS family S33		CDS	Probable exported protease [EC:3.4.-.-]			0	0	0	
wax ester synthase-like Acyl-CoA acyltransferase domain protein						FIG00826184: hypothetical protein			base_one miss	0	base_one miss	
3-methyl-2-oxobutanoate hydroxymethyltransferase	2.1.2.11	panB	ketopantoate hydroxymethyltransferase (EC 2.1.2.11)	2.1.2.11	CDS	3-methyl-2-oxobutanoate hydroxymethyltransferase	2.1.2.11		base_tigr	base_lit-s	base_ec	
CYTH domain protein			Uncharacterized conserved protein		CDS	Chaperonin GroEL (HSP60 family)			0	0	0	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein Rv2227			lit-s	base_one HP	base_one HP	
2OG-Fe(II) oxygenase superfamily protein			Uncharacterized protein conserved in bacteria (DUF2086).		CDS	hypothetical protein Rv2227			0	0	tf_idf	
conserved hypothetical protein			Fructose-2,6-bisphosphatase	5.4.2.1	CDS	FIG006762: Phosphoglycerate mutase family			base_one HP	base_one HP	0	
putative zinc ribbon domain protein			Zn-ribbon protein, possibly nucleic acid-binding		CDS	FIG137478: Hypothetical protein			0	0	0	
NIF3 family protein			dinuclear metal center protein, YbgI/SA1388 family		CDS	hypothetical protein			0	base_one HP	base_one HP	
aminotransferase class I and II family protein			Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	2.6.1.9	CDS	L-threonine 3-O-phosphate decarboxylase	4.1.1.81		0	0	base_ec-d	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
putative antitoxin VapB16						FIG00824339: hypothetical protein			base_one miss	0	base_one miss	
HAD hydrolase, IA, variant 1 family protein			Predicted phosphatases		CDS	Phosphoglycolate phosphatase	3.1.3.18		0	0	orth	
putative low molecular weight protein-tyrosine-phosphatase			Protein-tyrosine-phosphatase	3.1.3.48	CDS	Low molecular weight protein tyrosine phosphatase	3.1.3.48		0	0	base_ec	
cobalamin biosynthesis protein CobD	6.3.1.10	cobD	adenosylcobinamide-phosphate synthase (EC 6.3.1.10)	6.3.1.10	CDS	Adenosylcobinamide-phosphate synthase			base_tigr	gs-sh	lit-s	
SURF1 family protein			Uncharacterized conserved protein		CDS	"Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion"			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	hypothetical protein Rv2237			base_one HP	base_one HP	0	
putative peroxiredoxin Rv2238c/MT2298			Peroxiredoxin	1.11.1.15	CDS	Alkyl hydroperoxide reductase subunit C-like protein			orth	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3052).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820323: hypothetical protein			lit-s	base_one HP	base_one HP	
pyruvate dehydrogenase (acetyl-transferring), homodimeric type	1.2.4.1	aceE	pyruvate dehydrogenase E1 component, homodimeric type	1.2.4.1	CDS	Pyruvate dehydrogenase E1 component	1.2.4.1		base_tigr	base_ec	base_ec	
pucR C-terminal helix-turn-helix domain protein			Regulator of polyketide synthase expression		CDS	Regulator of polyketide synthase expression			gs-sh	map	base_lit-s	
malonyl CoA-acyl carrier protein transacylase	2.3.1.39	fabD	(acyl-carrier-protein) S-malonyltransferase	2.3.1.39	CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		base_ec	base_ec	base_ec	
meromycolate extension acyl carrier protein		acpM	Acyl carrier protein		CDS	Acyl carrier protein			gs-sh	orth	base_lit-s	
3-oxoacyl-[acyl-carrier-protein] synthase 1	2.3.1.41	kasA	3-oxoacyl-[acyl-carrier-protein] synthase II	2.3.1.-,2.3.1.41	CDS	"3-oxoacyl-[acyl-carrier-protein] synthase, KASII"	2.3.1.41		gs-sh	base_ec	map	
3-oxoacyl-[acyl-carrier-protein] synthase 2	2.3.1.41	kasB	3-oxoacyl-(acyl-carrier-protein) synthase	2.3.1.-	CDS	"3-oxoacyl-[acyl-carrier-protein] synthase, KASII"	2.3.1.41		gs-sh	base_ec	map	
carboxyl transferase domain protein			Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)		CDS	Propionyl-CoA carboxylase beta chain	6.4.1.3		0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00821976: hypothetical protein			base_one HP	base_one HP	lit-s	
FAD binding domain protein			Glycerol-3-phosphate dehydrogenase	1.1.5.3	CDS	Glycerol-3-phosphate dehydrogenase	1.1.5.3		0	0	base_lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
putative flavoprotein			hypothetical protein	2.5.1.26	CDS	Flavoprotein			base_one HP	lit-s	base_one HP	
FAD linked oxidase, C-terminal domain protein			FAD/FMN-containing dehydrogenases	2.5.1.26	CDS	Flavoprotein			0	0	0	
diacylglycerol kinase	2.7.1.107	dagK	diacylglycerol kinase	2.7.1.107	CDS	Diacylglycerol kinase-related protein			base_lit-s	orth	orth	
putative secreted protein			hypothetical protein		CDS	FIG00820044: hypothetical protein			base_one HP	0	base_one HP	
lysE type translocator family protein			LysE type translocator.		CDS	Possible membrane protein			lit-s	0	0	
asnC family protein			Transcriptional regulators		CDS	FIG039524: hypothetical protein			gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3145).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Beta-lactamase class C and other penicillin binding proteins			base_one HP	base_one HP	base_lit-s	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Possible transcriptional regulatory protein			0	0	0	
S-(hydroxymethyl)mycothiol dehydrogenase	1.1.1.306		mycothiol-dependent formaldehyde dehydrogenase	1.1.1.306	CDS	"Formaldehyde dehydrogenase MscR, NAD/mycothiol-dependent / S-nitrosomycothiol reductase MscR"	1.2.1.66		base_tigr	base_ec-d	base_ec-d	
metallo-beta-lactamase superfamily protein			Zn-dependent hydrolases, including glyoxylases		CDS	Putative hydrolase in cluster with formaldehyde/S-nitrosomycothiol reductase MscR			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Apolipoprotein N-acyltransferase	2.3.1.-		lit-s	base_one HP	base_one HP	
apolipoprotein N-acyltransferase	2.3.1.-	lnt	apolipoprotein N-acyltransferase	2.3.1.-	CDS	Apolipoprotein N-acyltransferase	2.3.1.-		base_lit-s	lit-s	lit-s	
hsp70 family protein			Molecular chaperone		CDS	Possible molecular chaperone DnaK			0	0	gs-sh	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"			0	0	0	
major Facilitator Superfamily protein			Major Facilitator Superfamily.		CDS	FIG00820050: hypothetical protein			lit-s	0	0	
putative cytochrome P450 124			Cytochrome P450		CDS	putative cytochrome P450 hydroxylase			orth	tf_idf	tf_idf	
sulfotransferase domain protein			Predicted RNA-binding protein homologous to eukaryotic snRNP		CDS	FIG00821541: hypothetical protein			0	0	0	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 128			lit-s	tf_idf	tf_idf	
putative lipoprotein lppN			hypothetical protein		CDS	Lipoprotein LppN			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2695).		CDS	FIG00822175: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Predicted membrane protein		CDS	Possible membrane protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF202).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
putative toxin MazF8						FIG00832386: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG032699: hypothetical protein			lit-s	base_one HP	base_one HP	
cytochrome P450 121	1.14.-.-	cyp121	Cytochrome P450		CDS	Cytochrome P450 121			gs-sh	lit-s	orth	
glycerophosphoryl diester phosphodiesterase family protein			Glycerophosphoryl diester phosphodiesterase		CDS	Glycerophosphoryl diester phosphodiesterase	3.1.4.46		lit-s	lit-s	base_lit-s	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			FAD/FMN-containing dehydrogenases		CDS	Probable dehydrogenase			base_one HP	base_one HP	0	
phosphate transporter family protein			Phosphate/sulphate permeases		CDS	Probable low-affinity inorganic phosphate transporter			0	0	0	
bacterial regulatory helix-turn-helix , lysR family protein			Transcriptional regulator		CDS	Cys regulon transcriptional activator CysB			gs-sh	0	0	
conserved hypothetical protein						FIG00824482: hypothetical protein			base_one HP	base_one HP	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
alpha/beta hydrolase fold family protein			Esterase/lipase		CDS	Membrane-bound esterase LipM			0	0	0	
acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Diacyglycerol O-acyltransferase	2.3.1.20		base_tigr	map	base_ec	
DSBA-like thioredoxin domain protein			Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis		CDS	FIG00820384: hypothetical protein			0	0	0	
						FIG00822662: hypothetical protein			base_both miss	base_one miss	base_one miss	
na+/H+ antiporter			sodium/proton antiporter, CPA1 family (TC 2.A.36)		CDS	Na+/H+ antiporter			base_tigr	lit-s	map	
CDP-diacylglycerol pyrophosphatase family protein			CDP-diacylglycerol pyrophosphatase	3.6.1.26	CDS	CDP-diacylglycerol pyrophosphatase	3.6.1.26		lit-s	lit-s	base_lit-s	
putative lipoprotein lppO			hypothetical protein		CDS	Probable conserved lipoprotein lppO			base_one HP	lit-s	base_one HP	
rhodanese-like domain protein			Rhodanese-related sulfurtransferase	2.8.1.1, 2.8.1.2	CDS	"Thiosulfate sulfurtransferase, rhodanese"	2.8.1.1		0	0	base_ec-d	
phosphorylase superfamily protein			Nucleoside phosphorylase		CDS	FIG00821330: hypothetical protein			0	0	0	
phosphorylase superfamily protein			Nucleoside phosphorylase		CDS	FIG00821330: hypothetical protein			0	0	0	
aminotransferase class I and II family protein			Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities	4.4.1.8	CDS	Putative cystathionine beta-lyase	4.4.1.8		0	0	base_ec	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Colicin E2 tolerance protein CbrC-like protein			base_one HP	base_one HP	0	
haloalkane dehalogenase	3.8.1.5	dhmA	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.8.1.5	CDS	Haloalkane dehalogenase	3.8.1.5		base_ec	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821774: hypothetical protein			lit-s	base_one HP	base_one HP	
aldo/keto reductase family protein			Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)		CDS	Aldo/keto reductase			0	lit-s	0	
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			Molecular chaperone, HSP90 family		CDS	Chaperone protein HtpG			pfam-sh	map	gs-sh	
metallo-beta-lactamase superfamily protein			Zn-dependent hydrolases, including glyoxylases		CDS	FIG00823255: hypothetical protein			0	0	0	
cutinase family protein			Cutinase.	3.1.1.74	CDS	Cutinase Cut2	3.1.1.74		lit-s	tf_idf	base_ec	
conserved hypothetical protein			Domain of unknown function (DUF1918).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
amidohydrolase family protein			Predicted metal-dependent hydrolase of the TIM-barrel fold		CDS	PROBABLE ANTIBIOTIC-RESISTANCE PROTEIN			0	orth	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820486: hypothetical protein			lit-s	base_one HP	base_one HP	
						Flagelliform silk protein (Fragment)			base_both miss	base_one miss	base_one miss	
condensation domain protein			Uncharacterized protein containing a NRPS condensation (elongation) domain		CDS	FIG00821564: hypothetical protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821865: hypothetical protein			lit-s	base_one HP	base_one HP	
dienelactone hydrolase family protein			Hydrolases of the alpha/beta superfamily		CDS	Hydrolases of the alpha/beta superfamily			0	0	base_lit-s	
			Uncharacterized conserved protein		CDS				base_one miss	base_both miss	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00821864: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820166: hypothetical protein			lit-s	base_one HP	base_one HP	
phage integrase family protein			Site-specific recombinase XerD		CDS	Integrase			0	0	0	
hypothetical protein			hypothetical protein		CDS	FIG00822831: hypothetical protein			base_lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00820785: hypothetical protein			base_lit-s	base_one HP	base_one HP	
DNA binding , excisionase family domain protein			DNA binding domain, excisionase family		CDS	"DNA binding domain, excisionase family"			base_tigr	lit-s	lit-s	
putative exonuclease V subunit alpha			hypothetical protein		CDS	Putative ATP-dependent exoDNAse			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821808: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00821236: hypothetical protein			base_one HP	base_one HP	lit-s	
modulator of DNA gyrase family protein			Predicted Zn-dependent proteases and their inactivated homologs		CDS	"TldE/PmbA family protein, Actinobacterial subgroup"			0	0	0	
modulator of DNA gyrase family protein			Predicted Zn-dependent proteases and their inactivated homologs		CDS	"TldD family protein, Actinobacterial subgroup"			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	"Multiple sugar ABC transporter, membrane-spanning permease protein MsmF"			0	0	0	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	"Sugar ABC transporter, permease protein"			0	0	0	
bacterial extracellular solute-binding family protein			carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	Periplasmic sugar-binding lipoprotein UspC			0	0	0	
universal stress family protein			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	lit-s	0	
amino acid permease family protein			amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Cationic amino acid transport integral membrane protein RocE			0	tf_idf	0	
aminotransferase class-III family protein			Ornithine/acetylornithine aminotransferase	2.6.1.13	CDS	Ornithine aminotransferase	2.6.1.13		0	0	base_ec	
aminotransferase class-III family protein			Ornithine/acetylornithine aminotransferase	2.6.1.13	CDS	Ornithine aminotransferase ; N-terminus domain	2.6.1.13		0	0	base_ec	
amidinotransferase family protein			N-Dimethylarginine dimethylaminohydrolase		CDS	"NG,NG-dimethylarginine dimethylaminohydrolase 1"	3.5.3.18		orth	0	0	
asnC family protein			transcriptional regulator, AsnC family		CDS	"Transcriptional regulator, AsnC family"			gs-sh	map	lit-s	
cobalt transport family protein			ABC-type cobalt transport system, permease component CbiQ and related transporters		CDS	Transmembrane component of energizing module of ECF transporters in Mycobacteria			tf_idf	0	0	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ATPase components of various ABC-type transport systems, contain duplicated ATPase		CDS	Candidate substrate-specific domain of ECF transporters in Mycobacteria / Duplicated ATPase component of energizing module of predicted ECF transporter in Mycobacteria			gs-sh	0	0	
hxlR-like helix-turn-helix family protein			Transcriptional regulators		CDS	"Transcriptional regulator, MarR family"			gs-sh	gs-sh	gs-sh	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
major Facilitator Superfamily protein			Nitrate/nitrite transporter		CDS	Nitrate/nitrite transporter			0	0	base_lit-s	
lppP/LprE lipofamily protein			LppP/LprE lipoprotein.		CDS	Lipoprotein LppP			gs-sh	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
multidrug resistance protein stp		stp	drug resistance transporter, EmrB/QacA subfamily		CDS	"Drug resistance transporter, EmrB/QacA subfamily"			gs-sh	map	lit-s	
putative NAD-dependent malic enzyme 2			Malic enzyme	1.1.1.38	CDS	NAD-dependent malic enzyme	1.1.1.38		0	0	base_ec	
hypothetical protein						FIG00823263: hypothetical protein			base_one HP	base_one HP	base_one miss	
cysteine synthase A	2.5.1.47	cysK	cysteine synthase (EC 2.5.1.47)	2.5.1.47	CDS	Cysteine synthase	2.5.1.47		base_ec	base_ec	base_ec	
serine O-acetyltransferase	2.3.1.30	cysE	serine O-acetyltransferase (EC 2.3.1.30)	2.3.1.30	CDS	Serine acetyltransferase	2.3.1.30		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823443: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG031860: hypothetical protein			lit-s	base_one HP	base_one HP	
thiF family protein			Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	Molybdopterin biosynthesis protein MoeW			gs-sh	0	0	
transport family protein			Transport protein		CDS	Transmembrane transport protein MmpL9			base_tigr	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
conserved hypothetical protein						FIG00821429: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative lipoprotein lppQ			hypothetical protein		CDS	Lipoprotein LppQ			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820230: hypothetical protein			lit-s	base_one HP	base_one HP	
DNA primase	2.7.7.-	dnaG	DNA primase (EC 2.7.7.-)	2.7.7.-	CDS	DNA primase	2.7.7.-		base_tigr	base_lit-s	lit-s	
dGTPase family protein	3.1.5.1	dgt	deoxyguanosinetriphosphate triphosphohydrolase, putative	3.1.5.1	CDS	deoxyguanosinetriphosphate triphosphohydrolase-like protein			base_tigr	0	0	
repair family protein			Beta-propeller domains of methanol dehydrogenase type		CDS	Possible membrane protein			0	0	0	
putative ESAT-6-like protein 6			Proteins of 100 residues with WXG.		CDS	ESAT-6-like protein EsxL			0	0	0	
putative ESAT-6-like protein 7			WXG100 family type VII secretion target		CDS	ESAT-6-like protein EsxK			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG041762: hypothetical protein			lit-s	base_one HP	base_one HP	
phospholipase C 1	3.1.4.3	plcA	Phospholipase C	3.1.4.3	CDS	Phospholipase C 3 PlcC	3.1.4.3		base_ec	base_ec	base_ec	
phospholipase C 2	3.1.4.3	plcB	Phospholipase C	3.1.4.3	CDS	Phospholipase C 3 PlcC	3.1.4.3		base_ec	base_ec	base_ec	
phospholipase C 1	3.1.4.3	plcA	Phospholipase C	3.1.4.3	CDS	Phospholipase C 3 PlcC	3.1.4.3		base_ec	base_ec	base_ec	
hypothetical protein			hypothetical protein		CDS	FIG00822803: hypothetical protein			base_lit-s	base_one HP	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
pentapeptide repeats family protein			Pentapeptide repeats (8 copies).		CDS	PPE family protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
glycine--tRNA ligase	6.1.1.14	glyS	glycyl-tRNA synthetase (EC 6.1.1.14)	6.1.1.14	CDS	Glycyl-tRNA synthetase	6.1.1.14		base_tigr	base_ec	base_ec	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	"Transcriptional regulator, ArsR family"			gs-sh	gs-sh	lit-s	
ferric uptake regulator family protein			zinc uptake regulator, Fur family		CDS	Zinc uptake regulation protein ZUR			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820411: hypothetical protein			lit-s	base_one HP	base_one HP	
di-trans,poly-cis-decaprenylcistransferase	2.5.1.31	uppS	Undecaprenyl pyrophosphate synthetase	2.5.1.86,2.5.1.31	CDS	Undecaprenyl pyrophosphate synthetase	2.5.1.31		base_tigr	base_ec	base_lit-s	
DNA repair protein RecO		recO	DNA replication and repair protein RecO		CDS	DNA recombination and repair protein RecO			base_tigr	pfam-sh	pfam-sh	
GTP-binding protein Era		era	GTP-binding protein Era		CDS	GTP-binding protein Era			base_lit-s	base_lit-s	base_lit-s	
amidase family protein			Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases			0	0	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
transporter associated domain protein			Hemolysins and related proteins containing CBS domains		CDS	Magnesium and cobalt efflux protein CorC			0	0	gs-sh	
putative rRNA maturation factor			metalloprotein, YbeY/UPF0054 family		CDS	"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"			gs-sh	gs-sh	gs-sh	
phosphate starvation-inducible protein PhoH, predicted ATPase			Phosphate starvation-inducible protein PhoH, predicted ATPase		CDS	"Phosphate starvation-inducible protein PhoH, predicted ATPase"			lit-s	lit-s	lit-s	
pucR C-terminal helix-turn-helix domain protein			Regulator of polyketide synthase expression		CDS	Putative transcriptional activator protei			gs-sh	0	0	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
RNA methyltransferase, RsmE family protein	2.1.1.-		RNA methyltransferase, RsmE family	2.1.1.193	CDS	Ribosomal RNA small subunit methyltransferase E	2.1.1.-		base_tigr	0	0	
dnaJ C terminal domain protein			DnaJ-class molecular chaperone with C-terminal Zn finger domain		CDS	Chaperone protein DnaJ			gs-sh	gs-sh	pfam-sh	
heat-inducible transcription repressor HrcA		hrcA	heat-inducible transcription repressor HrcA		CDS	Heat-inducible transcription repressor HrcA			base_lit-s	lit-s	lit-s	
conserved hypothetical protein			Transcription regulator of the Arc/MetJ class		CDS	FIG00996129: hypothetical protein			base_one HP	base_one HP	0	
low molecular weight antigen MTB12		mtb12	hypothetical protein		CDS	Low molecular weight antigen MTB12 precursor			base_one HP	tf_idf	base_one HP	
protein mbtH		mbtH	Uncharacterized protein conserved in bacteria		CDS	Protein MbtH			gs-sh	lit-s	0	
pyridine nucleotide-disulfide oxidoreductase family protein			Lysine/ornithine N-monooxygenase		CDS	L-lysine 6-monooxygenase MbtG	1.14.13.59		0	0	0	
amino acid adenylation domain protein			amino acid adenylation domain		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		lit-s	0	0	
amino acid adenylation domain protein			amino acid adenylation domain		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		base_tigr	0	0	
polysaccharide biosynthesis family protein			Polyketide synthase modules and related proteins		CDS	Polyketide synthetase MbtD			0	0	0	
beta-ketoacyl synthase, C-terminal domain protein			Beta-ketoacyl synthase, N-terminal domain./Beta-ketoacyl synthase, C-terminal domain.		CDS	polyketide synthase			tf_idf	0	0	
phenyloxazoline synthase MbtB	6.3.2.-	mbtB	amino acid adenylation domain		CDS	Phenyloxazoline synthase MbtB	6.3.2.-		gs-sh	lit-s	orth	
2,3-dihydroxybenzoate-AMP ligase	6.3.2.-	dhbE	Peptide arylation enzymes	6.3.2.-	CDS	Bifunctional salicyl-AMP ligase/salicyl-S-arcp synthetase MbtA			gs-sh	pfam-sh	map	
alpha/beta hydrolase fold family protein			Esterase/lipase	3.1.1.-	CDS	Acetyl hydrolase MbtJ			0	0	0	
salicylate synthase	5.4.4.2		salicylate synthase	4.2.99.21, 5.4.4.2,4.1.3.-	CDS	isochorismate synthase MbtI			base_lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820609: hypothetical protein			lit-s	base_one HP	base_one HP	
radical SAM superfamily protein			coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22)	1.3.99.22	CDS	"Hypothetical radical SAM family enzyme in heat shock gene cluster, similarity with CPO of BS HemN-type"			0	0	gs-sh	
conserved hypothetical protein			Predicted permease		CDS	putative sodium-dependent bicarbonate transporter			base_one HP	base_one HP	orth	
transglycosylase-like domain protein			Transglycosylase-like domain.		CDS	Resuscitation-promoting factor RpfD			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
sulfite reductase [ferredoxin]	1.8.7.1	sir	Sulfite reductase, beta subunit (hemoprotein)	1.8.7.1	CDS	"Ferredoxin--sulfite reductase, actinobacterial type"	1.8.7.1		base_ec	base_ec	base_ec	
adenylylsulfate reductase, thioredoxin dependent family protein	1.8.4.10		phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8)	1.8.4.8	CDS	Phosphoadenylyl-sulfate reductase [thioredoxin] / Adenylyl-sulfate reductase [thioredoxin]	1.8.4.8, 1.8.4.10		base_ec-d	base_ec-d	base_ec-d	
cbiX family protein			Uncharacterized conserved protein		CDS	Sirohydrochlorin ferrochelatase	4.99.1.4		gs-sh	0	0	
gamma-glutamyltranspeptidase family protein			gamma-glutamyltransferase 1 (EC:2.3.2.2). Threonine peptidase. MEROPS family T03	2.3.2.2	CDS	Gamma-glutamyltranspeptidase	2.3.2.2		map	lit-s	base_ec	
oligopeptide transporter, OPT family			putative oligopeptide transporter, OPT family		CDS	Oligopeptide transporter			lit-s	orth	tf_idf	
conserved hypothetical protein						FIG00820713: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
sulfate/thiosulfate import ATP-binding protein CysA	3.6.3.25	cysA	sulfate ABC transporter, ATP-binding protein	3.6.3.25	CDS	Sulfate and thiosulfate import ATP-binding protein CysA	3.6.3.25		base_ec	base_ec	base_ec	
sulfate ABC transporter, permease protein CysW		cysW	sulfate ABC transporter, permease protein CysW		CDS	Sulfate transport system permease protein CysW			base_lit-s	gs-sh	map	
sulfate ABC transporter, permease protein CysT		cysT	sulfate ABC transporter, permease protein CysT		CDS	Sulfate transport system permease protein CysT			base_lit-s	gs-sh	orth	
sulfate ABC transporter, sulfate-binding family protein			sulfate/thiosulfate-binding protein		CDS	Sulfate and thiosulfate binding protein CysP			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
glycosyl hydrolases 15 family protein			Glucoamylase and related glycosyl hydrolases		CDS	Glucoamylase	3.2.1.3		0	0	0	
pknH-like extracellular domain protein			PknH-like extracellular domain.		CDS	Lipoprotein LppR			lit-s	0	0	
GTP-binding protein LepA	3.6.5.-	lepA	GTP-binding protein LepA		CDS	Translation elongation factor LepA			base_lit-s	pfam-sh	pfam-sh	
pemK-like family protein			PemK-like protein.		CDS	RNA 3'-terminal phosphate cyclase	6.5.1.4		lit-s	0	0	
conserved hypothetical protein			Predicted signal-transduction protein containing cAMP-binding and CBS domains		CDS	CBS domain protein			base_one HP	base_one HP	pfam-sh	
hypothetical protein						FIG00822338: hypothetical protein			base_one HP	base_one HP	base_one miss	
metallo-beta-lactamase superfamily protein			Metal-dependent hydrolases of the beta-lactamase superfamily III	3.1.26.11	CDS	metallo-beta-lactamase family protein			map	lit-s	orth	
transglutaminase-like superfamily protein			Transglutaminase-like enzymes, putative cysteine proteases		CDS	"Protein containing transglutaminase-like domain, putative cysteine protease"			0	0	lit-s	
A predicted alpha-helical domain with a conserved ER motif family protein			Uncharacterized protein conserved in bacteria		CDS	Protein containing domains DUF403			0	0	lit-s	
A circularly permuted ATPgrasp family protein			Uncharacterized conserved protein		CDS	"Protein containing domains DUF404, DUF407"			0	0	lit-s	
ribosomal protein S20		rpsT	SSU ribosomal protein S20P		CDS	SSU ribosomal protein S20p			base_tigr	map	lit-s	
DNA polymerase III, delta subunit			DNA polymerase III, delta subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III delta subunit	2.7.7.7		lit-s	lit-s	base_ec	
comEC/Rec2-related domain protein			ComEC/Rec2-related protein		CDS	DNA internalization-related competence protein ComEC/Rec2			base_tigr	0	0	
competence ComEA helix-hairpin-helix repeat region domain protein			competence protein ComEA helix-hairpin-helix repeat region		CDS	Putative competence protein ComEA			base_tigr	0	0	
putative predicted protein						FIG00820458: hypothetical protein			base_one miss	lit-s	base_one miss	
acetyltransferase domain protein			Predicted acetyltransferase involved in intracellular survival and related acetyltransferases		CDS	Enhanced intracellular survival protein			0	0	0	
EDD, DegV family domain protein			EDD domain protein, DegV family		CDS	"Hypothetical protein DUF194, DegV family"			base_tigr	pfam-sh	pfam-sh	
GDSL-like Lipase/Acylhydrolase family protein			GDSL-like Lipase/Acylhydrolase family.		CDS	FIG00999365: hypothetical protein			lit-s	0	0	
histidine phosphatase super family protein			Fructose-2,6-bisphosphatase	5.4.2.1	CDS	Phosphoglycerate mutase family			0	0	0	
oligomerisation domain protein			iojap-like ribosome-associated protein		CDS	Iojap protein			0	0	0	
nicotinate (nicotinamide) nucleotide adenylyltransferase	2.7.7.18	nadD	nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)	2.7.7.18	CDS	Nicotinate-nucleotide adenylyltransferase	2.7.7.18		base_ec	base_ec	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00823750: hypothetical protein			base_lit-s	base_one HP	base_one HP	
tellurite resistance TehB family protein			Dimethyladenosine transferase (rRNA methylation)		CDS	SAM-dependent methyltransferases			0	0	0	
transposase IS116/IS110/IS902 family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
VWA domain containing CoxE-like family protein			Protein containing von Willebrand factor type A (vWA) domain		CDS	VWA containing CoxE family protein			0	pfam-sh	0	
ATPase associated with various cellular activities family protein			MoxR-like ATPases		CDS	MoxR-like ATPases			0	0	base_lit-s	
glutamate-5-semialdehyde dehydrogenase	1.2.1.41	proA	glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41)	1.2.1.41	CDS	Gamma-glutamyl phosphate reductase	1.2.1.41		base_tigr	base_ec	base_ec	
putative hydrogen peroxide-inducible gene activator			hypothetical protein		CDS				base_one HP	base_one miss	base_one HP	
						FIG00826286: hypothetical protein			base_both miss	base_one miss	base_one miss	
bacterial regulatory helix-turn-helix , lysR family protein			Bacterial regulatory helix-turn-helix protein, lysR family.		CDS	FIG00820063: hypothetical protein			lit-s	0	0	
alkyl hydroperoxide reductase subunit C	1.11.1.15	ahpC	Peroxiredoxin	1.11.1.15	CDS	Alkyl hydroperoxide reductase protein C	1.6.4.-		base_ec	lit-s	map	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
alkylhydroperoxidase, AhpD family protein	1.11.1.15	ahpD	alkylhydroperoxidase, AhpD family		CDS	Alkylhydroperoxidase protein D			lit-s	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
hypothetical protein						FIG00823203: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative methyltransferase type 11			hypothetical protein		CDS	FIG00823410: hypothetical protein			base_one HP	0	base_one HP	
cyclic nucleotide-binding domain protein			Small-conductance mechanosensitive channel		CDS	Small-conductance mechanosensitive channel membrane protein			0	0	lit-s	
HAMP domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.-	CDS	Adenylate cyclase	4.6.1.1		pfam-sh	0	0	
						FIG00830561: hypothetical protein			base_both miss	base_one miss	base_one miss	
hypothetical protein									base_one HP	base_one HP	base_both miss	
RIBOKINASE RBSK	2.7.1.15	rbsK	Sugar kinases, ribokinase family	2.7.1.15	CDS	Ribokinase	2.7.1.15		base_ec	base_ec	base_ec	
putative predicted protein						FIG00820419: hypothetical protein			base_one miss	lit-s	base_one miss	
glutamine-dependent NAD(+) synthetase	6.3.5.1	nadE	NAD synthase	6.3.5.1	CDS	NAD synthetase / Glutamine amidotransferase chain of NAD synthetase	6.3.1.5		base_ec	base_ec-d	base_ec-d	
isoprenylcysteine carboxyl methyltransferase family protein			Phospholipid methyltransferase.		CDS	Putative protein-S-isoprenylcysteine methyltransferase			0	0	0	
glutamate 5-kinase	2.7.2.11	proB	glutamate 5-kinase	2.7.2.11	CDS	Glutamate 5-kinase / RNA-binding C-terminal domain PUA	2.7.2.11		base_lit-s	base_ec	base_ec	
obg family GTPase CgtA		cgtA	Obg family GTPase CgtA		CDS	Obg			lit-s	0	0	
ribosomal protein L27		rpmA	LSU ribosomal protein L27P		CDS	LSU ribosomal protein L27p			base_tigr	map	lit-s	
ribosomal protein L21		rplU	LSU ribosomal protein L21P		CDS	LSU ribosomal protein L21p			base_tigr	map	lit-s	
conserved hypothetical protein						FIG00822907: hypothetical protein			base_one HP	base_one HP	base_one miss	
ribonuclease, Rne/Rng family domain protein	3.1.4.-		ribonuclease, Rne/Rng family	3.1.26.12	CDS	Ribonuclease E	3.1.26.12		base_tigr	map	base_ec	
			Na+/H+-dicarboxylate symporters		CDS				base_one miss	base_both miss	base_one miss	
nucleoside diphosphate kinase	2.7.4.6	ndk	nucleoside diphosphate kinase (EC 2.7.4.6)	2.7.4.6	CDS	Nucleoside diphosphate kinase	2.7.4.6		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF4233).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
bifunctional FolC family protein	6.3.2.-	folC	folylpolyglutamate synthase/dihydrofolate synthase	6.3.2.12, 6.3.2.17	CDS	Dihydrofolate synthase / Folylpolyglutamate synthase	6.3.2.12, 6.3.2.17		base_tigr	map	base_ec	
valine--tRNA ligase	6.1.1.9	valS	valyl-tRNA synthetase (EC 6.1.1.9)	6.1.1.9	CDS	Valyl-tRNA synthetase	6.1.1.9		base_tigr	base_ec	base_ec	
putative trans-acting enoyl reductase Rv2449c			Uncharacterized conserved protein		CDS	Possible membrane protein			0	0	0	
transglycosylase-like domain protein			Transglycosylase-like domain.		CDS	Putative saccharopine dehydrogenase			lit-s	0	0	
mobA-like NTP transferase domain protein			molybdenum cofactor guanylyltransferase	2.7.7.77	CDS	Molybdopterin-guanine dinucleotide biosynthesis protein MobA			gs-sh	gs-sh	gs-sh	
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit	1.2.7.3	CDS	"2-oxoglutarate oxidoreductase, beta subunit"	1.2.7.3		0	0	base_ec	
acceptor oxidoreductase, alpha subunit			2-oxoacid:acceptor oxidoreductase, alpha subunit	1.2.7.3	CDS	"2-oxoglutarate oxidoreductase, alpha subunit"	1.2.7.3		base_tigr	map	base_ec	
major Facilitator Superfamily protein			Sugar phosphate permease		CDS	Integral membrane transport protein			0	0	0	
ATP-dependent Clp protease, ATP-binding subunit ClpX		clpX	ATP-dependent Clp protease ATP-binding subunit ClpX	3.4.21.92	CDS	ATP-dependent Clp protease ATP-binding subunit ClpX			base_tigr	lit-s	base_lit-s	
homocysteine S-methyltransferase	2.1.1.10	mmuM	homocysteine S-methyltransferase (EC 2.1.1.10)	2.1.1.10	CDS	Homocysteine S-methyltransferase	2.1.1.10		base_ec	base_ec	base_ec	
multidrug resistance protein stp		stp	Arabinose efflux permease		CDS	Multidrug resistance integral membrane efflux protein EmrB			gs-sh	0	0	
ATP-dependent Clp protease proteolytic subunit 2	3.4.21.92	clpP2	ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	3.4.21.92	CDS	ATP-dependent Clp protease proteolytic subunit	3.4.21.92		base_ec	base_ec	base_ec	
ATP-dependent Clp protease proteolytic subunit 1	3.4.21.92	clpP1	ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92)	3.4.21.92	CDS	ATP-dependent Clp protease proteolytic subunit	3.4.21.92		base_ec	base_ec	base_ec	
trigger factor	5.2.1.8	tig	trigger factor		CDS	Cell division trigger factor	5.2.1.8		base_lit-s	base_ec	orth	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Esterase A			0	0	0	
formamidopyrimidine-DNA glycosylase H2TH domain protein			Formamidopyrimidine-DNA glycosylase	3.2.2.-, 4.2.99.18	CDS	Formamidopyrimidine-DNA glycosylase	3.2.2.23		0	0	base_lit-s	
ribose-5-phosphate isomerase B	5.3.1.6	rpiB	ribose 5-phosphate isomerase	5.3.1.6	CDS	Ribose 5-phosphate isomerase B / Galactose 6-phosphate isomerase	5.3.1.6		base_ec	base_ec	base_ec	
DSBA-like thioredoxin domain protein			Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis		CDS	hypothetical protein			0	base_one HP	base_one HP	
aminopeptidase N	3.4.11.2	pepN	Membrane alanyl aminopeptidase (EC 3.4.11.2). Metallo peptidase. MEROPS family M01	3.4.11.2	CDS	Membrane alanine aminopeptidase N	3.4.11.2		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00997368: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821364: hypothetical protein			lit-s	base_one HP	base_one HP	
HNH endonuclease family protein			Restriction endonuclease		CDS	HNH endonuclease family protein			0	base_lit-s	0	
group 2 truncated hemoglobin glbO		glbO	Truncated hemoglobins		CDS	Hemoglobin-like protein HbO			gs-sh	0	0	
alpha amylase, catalytic domain protein			Glycosidases	3.2.1.20	CDS	Alpha-glucosidase	3.2.1.20		0	0	base_ec	
hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG01001213: hypothetical protein			lit-s	base_one HP	base_one HP	
acyl-ACP thioesterase family protein			Predicted thioesterase	3.1.2.-	CDS	FIG00995656: hypothetical protein			0	0	0	
bacterial NAD-glutamate dehydrogenase family protein			glutamate dehydrogenase (NAD) (EC 1.4.1.2)	1.4.1.2	CDS	"NAD-specific glutamate dehydrogenase, large form"	1.4.1.2		0	0	base_ec	
heme ABC exporter, ATP-binding protein CcmA	3.6.3.41	ccmA	ATP-binding cassette protein, ChvD family		CDS	ABC transporter ATP-binding protein			gs-sh	gs-sh	map	
single-strand binding family protein			Single-stranded DNA-binding protein		CDS	Single-strand DNA binding protein			0	0	orth	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
acyltransferase family protein			glycerol-3-phosphate acyltransferase (EC 2.3.1.15)	2.3.1.15	CDS	Glycerol-3-phosphate acyltransferase	2.3.1.15		tf_idf	tf_idf	base_ec	
HAD phosphoserine phosphatase-like hydrolase, IB family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase	3.1.3.3, 2.3.1.51,2.3.1.51	CDS	Phosphoserine phosphatase / 1-acyl-sn-glycerol-3-phosphate acyltransferase	3.1.3.3, 2.3.1.51		0	0	base_ec-d	
acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		Diacylglycerol O-acyltransferase	2.3.1.20	CDS	"Acyltransferase, ws/dgat/mgat subfamily protein"			base_tigr	lit-s	map	
hypothetical protein						FIG00822297: hypothetical protein			base_one HP	base_one HP	base_one miss	
alpha/beta hydrolase fold family protein			Esterase/lipase		CDS	Carboxylesterase LipQ			0	0	orth	
putative enoyl-CoA hydratase echA14			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		0	0	base_ec	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
bacterial regulatory s, luxR family protein			Predicted ATPase		CDS	"Adenylyl cyclase class-3/4/guanylyl cyclase / Disease resistance domain-containing protein / Tetratricopeptide repeat-containing protein / Transcriptional regulator, LuxR family"			gs-sh	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
hypothetical protein			hypothetical protein		CDS	FIG00822820: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			TIGR00725 family protein		CDS	Rossmann-fold nucleotide-binding protein			base_one HP	base_one HP	0	
thymidylate synthase family protein			Thymidylate synthase		CDS	FIG00824247: hypothetical protein			lit-s	0	0	
antitoxin VapB39		vapB39				FIG00823232: hypothetical protein			base_one miss	0	base_one miss	
putative ribonuclease VapC39			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Toxin 1, PIN domain"			0	0	pfam-sh	
putative DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE E2 COMPONENT PDHC			Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes	2.3.1.12	CDS	Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex	2.3.1.168		0	0	base_ec-d	
transketolase, pyrimidine binding domain protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit	1.2.4.1	CDS	"Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit"	1.2.4.4		0	0	base_ec-d	
pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit	1.2.4.1	pdhA	pyruvate dehydrogenase E1 component, alpha subunit	1.2.4.1	CDS	"Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit"	1.2.4.4		base_tigr	base_ec-d	base_ec-d	
citrate lyase subunit beta-like protein	4.1.-.-	citE	Citrate lyase beta subunit	4.1.3.34, 4.1.3.6	CDS	Hydroxymethylglutaryl-CoA lyase	4.1.3.4		gs-sh	0	base_ec-d	
maoC like domain protein			Acyl dehydratase		CDS	Oxidase regulatory-related protein			gs-sh	map	orth	
acyl-CoA dehydrogenase, N-terminal domain protein			butyryl-CoA dehydrogenase	1.3.99.2	CDS	Isovaleryl-CoA dehydrogenase	1.3.99.10		0	0	base_ec-d	
acetyl-/propionyl-coenzyme A carboxylase alpha chain	6.3.4.14	accA1	Acetyl/propionyl-CoA carboxylase, alpha subunit	6.3.4.14	CDS	Methylcrotonyl-CoA carboxylase biotin-containing subunit	6.4.1.4		base_ec	base_ec-d	base_ec-d	
carboxyl transferase domain protein			Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)	6.4.1.4	CDS	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit	6.4.1.4		0	0	base_ec	
3-oxoacid CoA-transferase, B subunit	2.8.3.-		3-oxoacid CoA-transferase, B subunit	2.8.3.5	CDS	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B	2.8.3.5		base_lit-s	orth	base_ec	
3-oxoacid CoA-transferase, A subunit	2.8.3.-		3-oxoacid CoA-transferase, A subunit	2.8.3.5	CDS	Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A	2.8.3.5		base_lit-s	orth	base_ec	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Acetoacetyl-CoA synthetase / Long-chain-fatty-acid--CoA ligase	6.2.1.16, 6.2.1.3		pfam-sh	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
major Facilitator Superfamily protein			Permeases of the major facilitator superfamily		CDS	Permease of the major facilitator transporter superfamily			0	tf_idf	0	
mycobacterium membrane family protein			Mycobacterium membrane protein.		CDS	POSSIBLE CONSERVED PROLINE RICH MEMBRANE PROTEIN			lit-s	0	0	
short chain dehydrogenase family protein			Short-chain dehydrogenases of various substrate specificities		CDS	Short-chain dehydrogenase/reductase SDR			0	0	0	
ftsK/SpoIIIE family protein			Predicted ATPase		CDS	ATPase			gs-sh	map	lit-s	
oligoribonuclease	3.1.-.-	orn	Oligoribonuclease (3'->5' exoribonuclease)	3.1.-	CDS	3'-to-5' oligoribonuclease (orn)			gs-sh	gs-sh	gs-sh	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820308: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822709: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821053: hypothetical protein			base_one HP	base_one HP	0	
helix-turn-helix family protein			Predicted Zn peptidase		CDS	DNA-binding protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821793: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820249: hypothetical protein			lit-s	base_one HP	base_one HP	
L,D-transpeptidase catalytic domain protein			Uncharacterized protein conserved in bacteria		CDS	Lipoprotein LppS			0	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF3618).		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	base_one HP	gs-sh	
peptidase M20/M25/M40 family protein			Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases		CDS	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A"			0	0	0	
putative peroxiredoxin Rv2521/MT2597			Peroxiredoxin	1.11.1.15	CDS	"Thiol peroxidase, Bcp-type"	1.11.1.15		0	0	base_ec	
holo-[acyl-carrier-protein] synthase	2.7.8.7	acpS	phosphopantetheine--protein transferase domain	2.7.8.7	CDS	Holo-[acyl-carrier protein] synthase	2.7.8.7		base_ec	base_ec	base_ec	
beta-ketoacyl synthase, C-terminal domain protein			fatty acid synthase, bacterial type (EC 2.3.1.-)	2.3.1.-	CDS	[Acyl-carrier-protein] acetyl transferase of FASI / Enoyl-[acyl-carrier-protein] reductase of FASI / 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase of FASI / [Acyl-carrier-protein] malonyl transferase of FASI / [Acyl-carrier-protein] palmitoyl transferase of FASI / Acyl carrier protein of FASI / 3-oxoacyl-[acyl-carrier-protein] reductase of FASI / 3-oxoacyl-[acyl-carrier-protein] synthase of FASI	2.3.1.38, 1.3.1.9, 4.2.1.61, 2.3.1.39, 2.3.1.-, 1.1.1.100, 2.3.1.41		0	0	0	
conserved hypothetical protein			TAT (twin-arginine translocation) pathway signal sequence./Domain of unknown function (DUF1906).		CDS	Putative secreted protein			base_one HP	base_one HP	0	
putative antitoxin VapB17			Uncharacterized protein conserved in bacteria (DUF2191).		CDS	FIG01257073: hypothetical protein			0	0	lit-s	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821417: hypothetical protein			pfam-sh	0	0	
restriction endonuclease family protein			Restriction endonuclease		CDS	Mrr restriction system protein			lit-s	tf_idf	orth	
transcriptional regulator, AbrB family domain protein						FIG00825978: hypothetical protein			base_one miss	0	base_one miss	
lsr2 family protein			ERCC4-type nuclease		CDS	ERCC4 domain-containing protein			gs-sh	map	pfam-sh	
putative ribonuclease VapC39			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Toxin 1, PIN domain"			0	0	pfam-sh	
antitoxin VapB39		vapB39				FIG00820351: hypothetical protein			base_one miss	0	base_one miss	
orn/Lys/Arg decarboxylase, major domain protein			Arginine/lysine/ornithine decarboxylases	4.1.1.19	CDS	Arginine decarboxylase	4.1.1.19		gs-sh	map	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822125: hypothetical protein			lit-s	base_one HP	base_one HP	
transcription antitermination factor NusB		nusB	NusB antitermination factor		CDS	Transcription termination protein NusB			base_tigr	pfam-sh	pfam-sh	
translation elongation factor P		efp	translation elongation factor P (EF-P)		CDS	Translation elongation factor P			base_tigr	lit-s	tf_idf	
putative metallopeptidase			Xaa-Pro aminopeptidase		CDS	"Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)"			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF1282).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
3-dehydroquinate dehydratase, type II	4.2.1.10	aroQ	3-dehydroquinate dehydratase (EC 4.2.1.10)	4.2.1.10	CDS	3-dehydroquinate dehydratase II	4.2.1.10		base_tigr	base_ec	base_ec	
3-dehydroquinate synthase	4.2.3.4	aroB	3-dehydroquinate synthase (EC 4.2.3.4)	4.2.3.4	CDS	3-dehydroquinate synthase	4.2.3.4		base_tigr	base_lit-s	base_ec	
shikimate kinase family protein			shikimate kinase (EC 2.7.1.71)	2.7.1.71	CDS	Shikimate kinase I	2.7.1.71		lit-s	tf_idf	base_ec	
chorismate synthase	4.2.3.5	aroC	chorismate synthase (EC 4.2.3.5)	4.2.3.5	CDS	Chorismate synthase	4.2.3.5		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2580).		CDS	FIG00824306: hypothetical protein			base_one HP	base_one HP	lit-s	
alpha/beta hydrolase family protein			Alpha/beta hydrolase.		CDS	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN			lit-s	0	0	
putative lipoprotein lppA			hypothetical protein		CDS	Lipoprotein LppA			base_one HP	lit-s	base_one HP	
putative lipoprotein lppA			hypothetical protein		CDS	Lipoprotein LppA			base_one HP	lit-s	base_one HP	
hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein			Transcription regulator of the Arc/MetJ class		CDS	hypothetical protein Rv2545			base_one HP	base_one HP	0	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			pfam-sh	map	gs-sh	
putative antitoxin VapB19			Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain		CDS	"DNA-binding protein, CopG family"			0	0	gs-sh	
putative ribonuclease VapC19			Predicted nucleic acid-binding protein, contains PIN domain		CDS	PIN domain protein			0	0	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821055: hypothetical protein			lit-s	base_one HP	base_one HP	
putative ribonuclease VapC20			Predicted nucleic acid-binding protein, contains PIN domain		CDS	hypothetical protein Rv2549c			0	0	0	
antitoxin VapB20		vapB20	Ribbon-helix-helix protein, copG family.		CDS	"DNA-binding protein, CopG family"			0	0	gs-sh	
type IV leader peptidase family protein			Type II secretory pathway, prepilin signal peptidase PulO and related peptidases	3.4.23.43, 2.1.1.-	CDS	probable type IV peptidase			0	0	0	
shikimate-5-dehydrogenase	1.1.1.25	aroE	shikimate dehydrogenase (EC 1.1.1.25)	1.1.1.25	CDS	Shikimate 5-dehydrogenase I alpha	1.1.1.25		base_tigr	base_ec	base_ec	
yceG-like family protein			Predicted periplasmic solute-binding protein		CDS	FIG004453: protein YceG like			gs-sh	gs-sh	map	
conserved hypothetical protein			RNAse H-fold protein YqgF	3.1.-	CDS	Putative Holliday junction resolvase YggF			base_one HP	base_one HP	0	
alanine--tRNA ligase	6.1.1.7	alaS	alanyl-tRNA synthetase (EC 6.1.1.7)	6.1.1.7	CDS	Alanyl-tRNA synthetase	6.1.1.7		base_tigr	base_ec	base_ec	
conserved hypothetical protein			secondary thiamine-phosphate synthase enzyme		CDS	FIG027887: hypothetical protein			base_one HP	base_one HP	0	
antibiotic biosynthesis monooxygenase family protein			hypothetical protein		CDS	hypothetical protein Rv2558			base_one HP	0	base_one HP	
antibiotic biosynthesis monooxygenase family protein			hypothetical protein		CDS	FIG030001: hypothetical protein			base_one HP	0	base_one HP	
sigma-54 interaction domain protein			Recombination protein MgsA		CDS	"ATPase, AAA family"			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Predicted integral membrane protein		CDS	PROBABLE PROLINE AND GLYCINE RICH TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	orth	
putative predicted protein						FIG00825530: hypothetical protein			base_one miss	lit-s	base_one miss	
			Protein of unknown function (DUF2652).		CDS				base_one miss	base_both miss	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF2652).		CDS	FIG00821041: hypothetical protein			base_one HP	base_one HP	lit-s	
ftsX-like permease family protein			ABC-type transport system, involved in lipoprotein release, permease component		CDS	Glutamine-transport transmembrane protein ABC transporter			gs-sh	0	0	
ABC transporter family protein			ABC-type antimicrobial peptide transport system, ATPase component		CDS	Glutamine-transport ATP-binding protein ABC transporter GlnQ			map	tf_idf	gs-sh	
cyclic nucleotide-binding domain protein			Predicted esterase of the alpha-beta hydrolase superfamily		CDS	Uncharacterized NTE family protein			0	0	0	
transglutaminase-like superfamily protein			Uncharacterized protein conserved in bacteria		CDS	Large protein containing transglutaminase-like domain			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00821164: hypothetical protein			base_one HP	base_one HP	lit-s	
A circularly permuted ATPgrasp family protein			Uncharacterized conserved protein		CDS	"Protein containing domains DUF404, DUF407, DUF403"			0	0	lit-s	
transglutaminase-like superfamily protein			Transglutaminase-like enzymes, putative cysteine proteases		CDS	"Protein containing transglutaminase-like domain, putative cysteine protease"			0	0	lit-s	
conserved hypothetical protein			Predicted membrane protein		CDS	Possible membrane protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00822845: hypothetical protein			base_one HP	base_one HP	lit-s	
aspartate--tRNA ligase	6.1.1.-	aspS	aspartyl-tRNA synthetase, bacterial type	6.1.1.12	CDS	Aspartyl-tRNA synthetase @ Aspartyl-tRNA(Asn) synthetase	6.1.1.12, 6.1.1.23		base_tigr	gs-sh	base_ec-d	
2-dehydropantoate 2-reductase family protein	1.1.1.-		ketopantoate reductase (EC 1.1.1.169)	1.1.1.169	CDS	2-dehydropantoate 2-reductase	1.1.1.169		base_tigr	lit-s	base_ec	
polyketide cyclase / dehydrase and lipid transport family protein			Uncharacterized conserved protein		CDS	FIG00820672: hypothetical protein			0	0	lit-s	
neutral zinc metallopeptidase family protein			Predicted metalloprotease		CDS	"YpfJ protein, zinc metalloprotease superfamily"			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Possible membrane protein			lit-s	base_one HP	base_one HP	
calcineurin-like phosphoesterase family protein			Predicted phosphohydrolases		CDS	Acid phosphatase	3.1.3.2		0	0	0	
radical SAM superfamily protein			DNA repair photolyase		CDS	Radical SAM domain protein			orth	lit-s	orth	
haloalkane dehalogenase 3	3.8.1.5	dhaA	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.8.1.5	CDS	Haloalkane dehalogenase	3.8.1.5		base_ec	base_ec	base_ec	
histidine--tRNA ligase	6.1.1.21	hisS	histidyl-tRNA synthetase (EC 6.1.1.21)	6.1.1.21	CDS	Histidyl-tRNA synthetase	6.1.1.21		base_tigr	base_ec	base_ec	
metallo-beta-lactamase superfamily protein			Zn-dependent hydrolases, including glyoxylases		CDS	Hydroxyacylglutathione hydrolase	3.1.2.6		0	orth	0	
cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein			Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	5.2.1.8	CDS	Peptidyl-prolyl cis-trans isomerase	5.2.1.8		0	0	base_ec	
bifunctional (p)ppGpp synthase/hydrolase relA	3.1.7.2	relA	(p)ppGpp synthetase, RelA/SpoT family	2.7.6.5	CDS	"GTP pyrophosphokinase, (p)ppGpp synthetase I"	2.7.6.5		base_ec-d	base_ec-d	base_ec	
adenine phosphoribosyltransferase	2.4.2.7	apt	Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins	2.4.2.7	CDS	Adenine phosphoribosyltransferase	2.4.2.7		base_ec	base_ec	base_ec	
bacterial extracellular solute-binding s, 5 Middle family protein			Bacterial extracellular solute-binding proteins, family 5 Middle.		CDS	"Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)"			tf_idf	map	gs-sh	
-export membrane protein SecF		secF	protein translocase subunit secF		CDS	Protein-export membrane protein SecF (TC 3.A.5.1.1)			gs-sh	gs-sh	gs-sh	
-export membrane protein SecD		secD	protein-export membrane protein, SecD/SecF family		CDS	Protein-export membrane protein SecD (TC 3.A.5.1.1)			gs-sh	0	0	
preprotein translocase, YajC subunit		yajC	preprotein translocase, YajC subunit		CDS	Preprotein translocase subunit YajC (TC 3.A.5.1.1)			base_lit-s	lit-s	lit-s	
4-aminobutyrate transaminase	2.6.1.19	gabT	4-aminobutyrate aminotransferase apoenzyme	2.6.1.19, 2.6.1.22,2.6.1.19	CDS	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase	2.6.1.19		base_tigr	base_ec	base_ec-d	
thioester reductase domain protein			thioester reductase domain		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		base_tigr	0	0	
PE family protein			PE family.		CDS	PE-PGRS virulence associated protein			lit-s	0	0	
holliday junction DNA helicase RuvB	3.6.4.12	ruvB	Holliday junction DNA helicase subunit RuvB	3.6.4.12	CDS	Holliday junction DNA helicase RuvB			base_tigr	lit-s	lit-s	
holliday junction DNA helicase RuvA	3.6.4.12	ruvA	Holliday junction DNA helicase subunit RuvA	3.6.4.12	CDS	Holliday junction DNA helicase RuvA			base_tigr	lit-s	lit-s	
crossover junction endodeoxyribonuclease RuvC	3.1.22.4	ruvC	Holliday junction endonuclease RuvC (EC 3.1.22.4)	3.1.22.4	CDS	Crossover junction endodeoxyribonuclease RuvC	3.1.22.4		base_tigr	base_ec	base_ec	
antitoxin VapB40		vapB40	looped-hinge helix DNA binding domain, AbrB family		CDS	FIG00823117: hypothetical protein			0	0	0	
putative ribonuclease VapC40			PIN domain.		CDS	"Toxin 1, PIN domain"			0	0	pfam-sh	
conserved hypothetical protein			Domain of unknown function (DUF4178).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function DUF2617.		CDS	FIG00993990: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Domain of unknown function (DUF4247).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Domain of Unknown Function (DUF350).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
spermine/spermidine synthase family protein			Predicted spermidine synthase with an N-terminal membrane domain	2.5.1.16	CDS	Spermidine synthase	2.5.1.16		0	0	base_ec	
antitoxin VapB41		vapB41	hypothetical protein		CDS	FIG00821819: hypothetical protein			base_one HP	0	base_one HP	
putative ribonuclease VapC41			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00820912: hypothetical protein			0	0	0	
conserved hypothetical protein			DNA-binding regulatory protein, YebC/PmpR family		CDS	FIG000859: hypothetical protein YebC			base_one HP	base_one HP	0	
pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2	2.6.-.-	pdxT	pyridoxal phosphate synthase yaaE subunit	2.6.-	CDS	"Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit"	2.4.2.-		base_tigr	0	0	
acyl-CoA thioesterase II	3.1.2.-	tesB	acyl-CoA thioesterase II	3.1.2.-	CDS	Acyl-CoA thioesterase II	3.1.2.-		base_lit-s	lit-s	lit-s	
pyridoxal 5'-phosphate synthase, synthase subunit Pdx1			pyridoxal phosphate synthase yaaD subunit	4.-	CDS	"Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit"	2.4.2.-		base_tigr	0	0	
pyridoxamine 5'-phosphate oxidase	1.4.3.5	pdxH	Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5)	1.4.3.5	CDS	Pyridoxamine 5'-phosphate oxidase	1.4.3.5		base_tigr	base_ec	base_ec	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
NUDIX domain protein			NTP pyrophosphohydrolases including oxidative damage repair enzymes		CDS	FIG019327: Probable conserved membrane protein			0	0	0	
GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase	2.4.1.57	pimA	Phosphatidylinositol alpha-mannosyltransferase (EC 2.4.1.57)	2.4.1.57	CDS	Phosphatidylinositol alpha-mannosyltransferase	2.4.1.57		base_ec	base_ec	base_ec	
phosphatidylinositol mannoside acyltransferase	2.3.1.-		Lauroyl/myristoyl acyltransferase	2.3.1.-	CDS	Lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis (Lauroyl/myristoyl acyltransferase)			0	0	0	
CDP-diacylglycerol--inositol 3-phosphatidyltransferase	2.7.8.11	pgsA1	CDP-diacylglycerol inositol 3-phosphatidyltransferase	2.7.8.5,2.7.8.11	CDS	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5		base_ec-d	base_ec-d	base_ec-d	
AP-4-A phosphorylase	2.7.7.53		Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases		CDS	FIG049476: HIT family protein			0	0	pfam-sh	
threonine--tRNA ligase	6.1.1.3	thrS	threonyl-tRNA synthetase (EC 6.1.1.3)	6.1.1.3	CDS	Threonyl-tRNA synthetase	6.1.1.3		base_tigr	base_ec	base_ec	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG037376: hypothetical protein			base_one HP	base_one HP	lit-s	
doxX family protein			DoxX.		CDS	Possible membrane protein			lit-s	0	0	
cupin domain protein			Uncharacterized conserved protein, contains double-stranded beta-helix domain		CDS	FIG00821167: hypothetical protein			orth	0	0	
helix-turn-helix domain protein			Predicted transcriptional regulator		CDS	Putative transcriptional regulatory protein			0	0	0	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
iclR helix-turn-helix domain protein			Predicted transcriptional regulator		CDS	Putative transcriptional regulatory protein			gs-sh	map	tf_idf	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Possible methyltransferase (Methylase)			0	0	0	
universal stress protein Rv2005c/MT2061			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	0	0	
universal stress protein Rv2624c/MT2699			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	0	0	
CBS domain protein			Zn-dependent proteases		CDS	Probable conserved transmembrane alanine and leucine rich protein			0	0	0	
hypoxic response protein 1			Predicted transcriptional regulator with C-terminal CBS domains		CDS	CBS domain protein			0	0	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821576: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820447: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Peptide chain release factor 1 (eRF1)		CDS	FIG00822103: hypothetical protein			base_one HP	base_one HP	0	
archease family protein			Uncharacterized conserved protein		CDS	Archease			0	lit-s	0	
conserved hypothetical protein			Uncharacterized conserved protein	6.5.1.3	CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF1876).		CDS	FIG00823991: hypothetical protein			base_one HP	base_one HP	lit-s	
hemerythrin HHE cation binding domain protein			Hemerythrin HHE cation binding domain.		CDS	FIG00822335: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822363: hypothetical protein			lit-s	base_one HP	base_one HP	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
chloramphenicol phosphotransferase-like family protein			Chloramphenicol 3-O-phosphotransferase		CDS	FIG00822113: hypothetical protein			0	0	0	
conserved hypothetical protein			Uncharacterized membrane-associated protein		CDS	DedA protein			base_one HP	base_one HP	gs-sh	
anti-anti-sigma factor family protein			anti-anti-sigma factor		CDS	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV			base_tigr	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG035174: membrane protein			base_one HP	base_one HP	0	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	"regulatory protein, ArsR"			gs-sh	lit-s	pfam-sh	
cadmium-induced protein CadI		cadI	Lactoylglutathione lyase and related lyases		CDS	Lactoylglutathione lyase	4.4.1.5		gs-sh	orth	map	
bacterial regulatory , arsR family protein			transcriptional regulator, ArsR family		CDS	Arsenical resistance operon repressor			gs-sh	gs-sh	orth	
arsenical-resistance protein		arsB	arsenical-resistance protein		CDS	PROBABLE ARSENIC-TRANSPORT INTEGRAL MEMBRANE PROTEIN ARSC			base_lit-s	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3018).		CDS	FIG00823111: hypothetical protein			base_one HP	base_one HP	lit-s	
hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821032: hypothetical protein			lit-s	base_one HP	base_one HP	
phage integrase family protein			Site-specific recombinase XerD		CDS	phage integrase family protein			0	base_lit-s	0	
parB-like nuclease domain protein			Predicted transcriptional regulators		CDS	FIG00822089: hypothetical protein			gs-sh	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
hypothetical protein						hypothetical protein			base_one HP	base_lit-s	base_one HP	
phage major capsid protein, HK97 family			phage major capsid protein, HK97 family		CDS	Phage major capsid protein			base_lit-s	0	0	
phage prohead protease, HK97 family	3.4.-.-		prohead peptidase. Unknown type peptidase. MEROPS family U35		CDS	"PhiRv1 phage, prohead protease, HK97 family"			base_tigr	0	0	
phage terminase, small subunit, P27 family			phage terminase, small subunit, putative, P27 family		CDS	Probable phiRv1 phage protein			base_tigr	0	0	
toxin Rv2653c/MT2730			hypothetical protein		CDS	FIG040773: hypothetical phiRv2 prophage protein			base_one HP	0	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG050287: hypothetical phiRv2 prophage protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3631).		CDS	FIG00821016: hypothetical phiRv2 prophage protein			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF2742).		CDS	Probable phiRv1 phage protein			base_one HP	base_one HP	0	
DNA binding , excisionase family domain protein			DNA binding domain, excisionase family		CDS	"gene 36 protein, putative"			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821498: hypothetical protein			lit-s	base_one HP	base_one HP	
phage integrase family protein			Site-specific recombinase XerD		CDS	Integrase			0	orth	0	
conserved hypothetical protein						"Mb2678c, -, len: 73 aa. Equivalent to Rv2660c, len: 75 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 73 aa overlap). (questionable orf). Hypothetical unknown protein. REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a large 10982 bp deletion leads to deletion of genes between Mb2677c and Mb2678c compared to Mycobacterium tuberculosis strain H37Rv."			base_one HP	base_one HP	base_one miss	
hypothetical protein			hypothetical protein		CDS	FIG00820863: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820935: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821862: hypothetical protein			lit-s	base_one HP	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
clp amino terminal domain protein			Clp amino terminal domain.		CDS	putative ATP-dependent protease ATP-binding subunit clpX'( EC:3.4.- )			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Putative alanine and valine rich exported protein			lit-s	base_one HP	base_one HP	
AFG1-like ATPase family protein			Predicted ATPase		CDS	putative ATP/GTP-binding integral membrane protein			tf_idf	map	orth	
acetyltransferase family protein			Acetyltransferases		CDS	FIG00820775: hypothetical protein			0	0	0	
ribD C-terminal domain protein			Pyrimidine reductase, riboflavin biosynthesis	3.5.4.26, 1.1.1.193	CDS	5-amino-6-(5-phosphoribosylamino)uracil reductase homolog	1.1.1.193		gs-sh	0	base_ec-d	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	FIG00995896: hypothetical protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2029).		CDS	Putative membrane protein Q2 colocalized with Q			base_one HP	base_one HP	0	
methionine-R-sulfoxide reductase	1.8.4.-	msrB	methionine-R-sulfoxide reductase	1.8.4.12	CDS	Peptide methionine sulfoxide reductase MsrB	1.8.4.12		base_lit-s	gs-sh	base_ec	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase colocalized with Q	2.1.1.-		0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
protoporphyrinogen oxidase	1.3.3.4	hemG	protoporphyrinogen oxidase (EC 1.3.3.4)	1.3.3.4	CDS	"Protoporphyrinogen IX oxidase, aerobic"	1.3.3.4		base_tigr	base_ec	base_ec	
uroporphyrinogen decarboxylase	4.1.1.37	hemE	uroporphyrinogen decarboxylase (EC 4.1.1.37)	4.1.1.37	CDS	Uroporphyrinogen III decarboxylase	4.1.1.37		base_tigr	base_ec	base_ec	
enoyl-CoA hydratase EchA15		echA15	Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		gs-sh	gs-sh	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3000).		CDS	Uncharacterized protein Q1 colocalized with Q			base_one HP	base_one HP	0	
1-deoxy-D-xylulose-5-phosphate synthase	2.2.1.7	dxs	1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)	2.2.1.7	CDS	1-deoxy-D-xylulose 5-phosphate synthase	2.2.1.7		base_tigr	base_ec	base_ec	
3'-5' exonuclease family protein			Ribonuclease D	3.1.13.5	CDS	Ribonuclease D	3.1.26.3		0	0	base_lit-s	
hypothetical protein						hypothetical protein			base_one HP	base_lit-s	base_one HP	
CBS domain protein			CBS domain.		CDS	FIG00822000: hypothetical protein			lit-s	0	0	
arsenical pump membrane family protein			possible tyrosine transporter P-protein (TC 2.A.45.2.1)		CDS	Na+/H+ antiporter NhaD type			0	0	0	
arsenical pump membrane family protein			possible tyrosine transporter P-protein (TC 2.A.45.2.1)		CDS	Na+/H+ antiporter NhaD type			0	0	0	
fluoroquinolones export permease protein Rv2686c/MT2760			hypothetical protein		CDS	PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND ALANINE AND VALINE RICH PROTEIN ABC TRANSPORTER			base_one HP	0	base_one HP	
fluoroquinolones export permease protein Rv2687c/MT2761			hypothetical protein		CDS	PROBABLE ANTIBIOTIC-TRANSPORT INTEGRAL MEMBRANE LEUCINE AND VALINE RICH PROTEIN ABC TRANSPORTER			base_one HP	0	base_one HP	
fluoroquinolones export ATP-binding protein Rv2688c/MT2762	3.6.3.-		ABC-type multidrug transport system, ATPase component		CDS	"ABC transporter, ATP-binding protein"			0	0	0	
conserved hypothetical protein			SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase		CDS	23S rRNA (Uracil-5-) -methyltransferase RumA	2.1.1.-		base_one HP	base_one HP	gs-sh	
hypothetical protein									base_one HP	base_one HP	base_both miss	
amino acid permease family protein			amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE AND VALINE AND LEUCINE RICH PROTEIN			0	0	0	
trkA-C domain protein			K+ transport systems, NAD-binding component		CDS	Trk system potassium uptake protein TrkA			gs-sh	gs-sh	gs-sh	
trkA-C domain protein			K+ transport systems, NAD-binding component		CDS	Trk system potassium uptake protein TrkA			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF3159).		CDS	PROBABLE CONSERVED INTEGRAL MEMBRANE ALANINE AND LEUCINE RICH PROTEIN			base_one HP	base_one HP	0	
putative nucleic acid binding, OB-fold, tRNA/helicase-type			ATP-dependent DNA helicase RecG	3.6.1.-	CDS	FIG00945047: hypothetical protein			gs-sh	0	0	
alpha/beta hydrolase fold family protein			Alpha/beta hydrolase family.		CDS	FIG00994821: hypothetical protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3710).		CDS	FIG00822685: hypothetical protein			base_one HP	base_one HP	lit-s	
deoxyuridine 5'-triphosphate nucleotidohydrolase	3.6.1.23	dut	deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)	3.6.1.23	CDS	Deoxyuridine 5'-triphosphate nucleotidohydrolase	3.6.1.23		base_ec	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3093).		CDS	PROBABLE CONSERVED ALANINE RICH TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	0	
conserved hypothetical protein			Domain of unknown function (DUF4193).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
lytR cell envelope-related transcriptional attenuator family protein			LytR cell envelope-related transcriptional attenuator.		CDS	Possible secreted alanine rich protein			lit-s	0	0	
inositol-1-monophosphatase SuhB	3.1.3.25	suhB	Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family	3.1.3.25	CDS	Inositol-1-monophosphatase	3.1.3.25		base_ec	base_ec	base_ec	
ROK family protein			Polyphosphate glucokinase (EC 2.7.1.63)	2.7.1.63	CDS	Polyphosphate glucokinase	2.7.1.63		map	orth	base_ec	
RNA polymerase sigma factor RpoD		rpoD	RNA polymerase sigma factor, sigma-70 family		CDS	"COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)"			gs-sh	gs-sh	map	
			Uncharacterized protein conserved in bacteria		CDS				base_one miss	base_both miss	base_one miss	
endoribonuclease L-PSP family protein			Putative translation initiation inhibitor, yjgF family		CDS	"Putative translation initiation inhibitor, YjgF family"			gs-sh	map	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820633: hypothetical protein			lit-s	base_one HP	base_one HP	
virulence factor BrkB family protein			Predicted membrane protein		CDS	hypothetical protein			0	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3039).		CDS	FIG00998432: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF3099).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
RNA polymerase sigma factor, sigma-70 family protein			RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma factor SigB			base_tigr	0	0	
iron-dependent repressor IdeR		ideR	iron (metal) dependent repressor, DtxR family		CDS	Iron-dependent repressor IdeR/DtxR			gs-sh	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4192).		CDS	FIG00999418: hypothetical protein			base_one HP	base_one HP	lit-s	
pyridine nucleotide-disulfide oxidoreductase family protein			Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.6.1.1	CDS	Soluble pyridine nucleotide transhydrogenase	1.6.1.1		0	0	base_ec	
PAC2 family protein			PAC2 family.		CDS	FIG00994994: hypothetical protein			lit-s	0	0	
dienelactone hydrolase family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	"Hydrolase, alpha/beta fold family"			0	0	0	
phenazine biosynthesis , PhzF family protein			Predicted epimerase, PhzC/PhzF homolog		CDS	Phenazine biosynthesis protein PhzF like			base_tigr	lit-s	map	
conserved hypothetical protein			Domain of unknown function (DUF1794).		CDS	DUF1794			base_one HP	base_one HP	lit-s	
hypothetical protein						FIG00821726: hypothetical protein			base_one HP	base_one HP	base_one miss	
transcriptional regulator NrdR		nrdR	transcriptional regulator NrdR		CDS	Ribonucleotide reductase transcriptional regulator NrdR			base_lit-s	gs-sh	map	
lysM domain protein			LysM domain.		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			lit-s	gs-sh	gs-sh	
repressor LexA	3.4.21.88	lexA	SOS-response transcriptional repressor, LexA	3.4.21.88	CDS	SOS-response repressor and protease LexA	3.4.21.88		base_tigr	base_ec	base_ec	
LGFP repeat family protein			Uncharacterized protein potentially involved in peptidoglycan biosynthesis		CDS	Possible conserved transmembrane alanine and glycine rich protein			0	0	0	
integral membrane , TerC family protein			integral membrane protein, TerC family		CDS	Integral membrane protein TerC			base_tigr	lit-s	lit-s	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	"putative acyl-CoA dehydrogenase fadE20( EC:1.3.99.-,EC:1.3.99.13 )"			0	0	0	
GTP-binding protein HflX		hflX	GTP-binding protein HflX	3.1.5.-	CDS	GTP-binding protein HflX			base_lit-s	base_lit-s	base_lit-s	
diaminopimelate epimerase	5.1.1.7	dapF	diaminopimelate epimerase (EC 5.1.1.7)	5.1.1.7	CDS	Diaminopimelate epimerase	5.1.1.7		base_tigr	base_ec	base_ec	
tRNA dimethylallyltransferase	2.5.1.75	miaA	tRNA dimethylallyltransferase	2.5.1.75	CDS	tRNA dimethylallyltransferase	2.5.1.75		base_lit-s	base_lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG01121091: hypothetical protein			lit-s	base_one HP	base_one HP	
putative membrane protein			hypothetical protein		CDS	"Putative conserved alanine, valine and leucine rich integral membrane protein"			base_one HP	0	base_one HP	
hypothetical protein						FIG00821119: hypothetical protein			base_one HP	base_one HP	base_one miss	
hypothetical protein						FIG00820016: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative transmembrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Domain of Unknown Function (DUF349).		CDS	ATPase involved in DNA repair			base_one HP	base_one HP	0	
tRNA-i(6)A37 thiotransferase enzyme MiaB	2.-.-.-	miaB	tRNA-i(6)A37 thiotransferase enzyme MiaB		CDS	tRNA-i(6)A37 methylthiotransferase			base_lit-s	gs-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG032330: hypothetical protein			lit-s	base_one HP	base_one HP	
			Bacteriophage protein gp37		CDS				base_one miss	base_both miss	base_one miss	
recX family protein			Uncharacterized protein conserved in bacteria		CDS	Regulatory protein RecX			gs-sh	0	0	
protein RecA		recA	intein/RecA protein		CDS	RecA protein @ intein-containing			pfam-sh	pfam-sh	pfam-sh	
fhuF 2Fe-2S C-terminal domain protein						Conserved hypothetical cysteine rich protein			base_one miss	0	base_one miss	
conserved hypothetical protein			Protein of unknown function (DUF3046).		CDS	FIG00820724: hypothetical protein			base_one HP	base_one HP	lit-s	
glycosyltransferase family 28 C-terminal domain protein			Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	Alanine rich transferase			0	0	0	
snoaL-like domain protein			Limonene-1,2-epoxide hydrolase	3.3.2.8	CDS	FIG00820841: hypothetical protein			0	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
hypothetical protein						FIG00823950: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative alanine rich transmembrane protein			hypothetical protein		CDS	Possible conserved membrane alanine rich protein			base_one HP	tf_idf	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821935: hypothetical protein			lit-s	base_one HP	base_one HP	
pspA/IM30 family protein			phage shock protein A (PspA) family protein		CDS	"Phage shock protein A (IM30) , suppresses sigma54-dependent transcription"			gs-sh	0	0	
helix-turn-helix family protein			Predicted transcriptional regulators		CDS	"Transcriptional regulator, XRE family"			0	0	tf_idf	
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5	pgsA	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5)	2.7.8.5	CDS	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	2.7.8.5		base_tigr	base_lit-s	base_ec	
acetyltransferase family protein			N-acetylglutamate synthase (EC 2.3.1.1)	2.3.1.1	CDS	"Acetyltransferase, GNAT family"			0	0	0	
ftsK/SpoIIIE family protein			DNA segregation ATPase FtsK/SpoIIIE and related proteins		CDS	Cell division protein FtsK			gs-sh	gs-sh	gs-sh	
antibiotic biosynthesis monooxygenase family protein			Uncharacterized conserved protein		CDS	Antibiotic biosynthesis monooxygenase			0	lit-s	0	
oxidoreductase, SDR family protein			oxidoreductase, SDR family		CDS	Dehydrogenase			base_tigr	0	0	
putative ribonuclease J Rv2752c			Predicted hydrolase of the metallo-beta-lactamase superfamily		CDS	Ribonuclease J2 (endoribonuclease in RNA processing)			0	0	0	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	O-Methyltransferase involved in polyketide biosynthesis			base_tigr	0	0	
dihydrodipicolinate synthase	4.2.1.52	dapA	dihydrodipicolinate synthase (EC 4.2.1.52)	4.2.1.52	CDS	Dihydrodipicolinate synthase	4.2.1.52		base_tigr	base_ec	base_ec	
thymidylate synthase, flavin-dependent	2.1.1.148	thyX	thymidylate synthase (FAD) (EC 2.1.1.148)	2.1.1.148	CDS	Thymidylate synthase thyX	2.1.1.-		base_tigr	gs-sh	gs-sh	
type I restriction-modification system specificity subunit S domain protein	3.1.21.3								base_one miss	base_one miss	base_both miss	
N-6 DNA Methylase family protein			Type I restriction-modification system methyltransferase subunit	2.1.1.72	CDS	"Type I restriction-modification system, DNA-methyltransferase subunit M"	2.1.1.72		0	0	base_ec	
putative ribonuclease VapC21			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"PilT protein, N-terminal"			0	0	gs-sh	
antitoxin VapB21		vapB21	Transcription regulator of the Arc/MetJ class		CDS	FIG00821100: hypothetical protein			0	0	0	
putative ribonuclease VapC28			Uncharacterized protein conserved in bacteria		CDS	"Toxin 1, PIN domain"			0	0	0	
rv0623-like transcription factor family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820737: hypothetical protein			0	0	lit-s	
type I restriction modification DNA specificity domain protein			Restriction endonuclease S subunits		CDS	"Type I restriction-modification system, specificity subunit S"	3.1.21.3		0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
dihydrofolate reductase	1.5.1.3	folA	dihydrofolate reductase (EC 1.5.1.3)	1.5.1.3	CDS	Dihydrofolate reductase	1.5.1.3		base_ec	base_ec	base_ec	
thymidylate synthase	2.1.1.45	thyA	thymidylate synthase (EC 2.1.1.45)	2.1.1.45	CDS	Thymidylate synthase	2.1.1.45		base_tigr	base_ec	base_ec	
dienelactone hydrolase family protein			Dienelactone hydrolase and related enzymes	3.1.1.45	CDS	Dienelactone hydrolase family			lit-s	lit-s	lit-s	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		0	0	0	
						hypothetical protein Rv2767c			base_both miss	base_one miss	base_one miss	
hypothetical protein						FIG00820771: hypothetical protein			base_one HP	base_one HP	base_one miss	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PE family protein			Polymorphic PE/PPE proteins C terminal./PE family.		CDS	PE family protein			0	base_lit-s	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
NADPH-dependent FMN reductase family protein			NADPH-dependent FMN reductase.		CDS	Multimeric flavodoxin WrbA			lit-s	map	gs-sh	
putative conserved membrane protein			hypothetical protein		CDS	FIG00820747: hypothetical protein			base_one HP	0	base_one HP	
dihydrodipicolinate reductase	1.3.1.26	dapB	dihydrodipicolinate reductase (EC 1.3.1.26)	1.3.1.26	CDS	Dihydrodipicolinate reductase	1.3.1.26		base_tigr	base_ec	base_ec	
acetyltransferase family protein			Acetyltransferases		CDS	"Acetyltransferase, GNAT family"			0	0	0	
2Fe-2S iron-sulfur cluster binding domain protein			Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	Vanillate O-demethylase oxidoreductase	1.14.13.-		0	0	0	
putative metal-dependent hydrolase family protein			Predicted metal-dependent hydrolase		CDS	FF domain protein			lit-s	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00820821: hypothetical protein			lit-s	0	0	
asnC family protein			Transcriptional regulators		CDS	"Transcriptional regulator, AsnC family"			gs-sh	map	tf_idf	
alanine dehydrogenase	1.4.1.1	ald	alanine dehydrogenase	1.4.1.1	CDS	Alanine dehydrogenase	1.4.1.1		base_lit-s	base_ec	base_ec	
putative 2-nitropropane dioxygenase			nitroalkane oxidase	1.13.12.16,1.7.3.1	CDS	2-nitropropane dioxygenase	1.13.11.32		0	lit-s	base_ec-d	
peptidase M16 inactive domain protein			Predicted Zn-dependent peptidases		CDS	"FIG007959: peptidase, M16 family"			0	0	0	
polyribonucleotide nucleotidyltransferase	2.7.7.8	pnp	polyribonucleotide nucleotidyltransferase	2.7.7.8	CDS	Polyribonucleotide nucleotidyltransferase	2.7.7.8		base_lit-s	base_ec	base_ec	
putative lipoprotein LppU			hypothetical protein		CDS	Lipoprotein LppU			base_one HP	lit-s	base_one HP	
ribosomal protein S15		rpsO	SSU ribosomal protein S15P		CDS	SSU ribosomal protein S15p (S13e)			base_tigr	0	0	
riboflavin biosynthesis protein RibF	2.7.1.26	ribF	FMN adenylyltransferase/riboflavin kinase	2.7.1.26, 2.7.7.2,2.7.7.2, 2.7.1.26	CDS	Riboflavin kinase / FMN adenylyltransferase	2.7.1.26, 2.7.7.2		base_tigr	base_ec-d	base_ec-d	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	ATPases involved in chromosome partitioning			gs-sh	map	base_lit-s	
iron dependent repressor, N-terminal DNA binding domain protein			iron (metal) dependent repressor, DtxR family		CDS	Mn-dependent transcriptional regulator MntR			tf_idf	map	orth	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	acyl-CoA dehydrogenase FadE21			0	tf_idf	0	
thiolase, C-terminal domain protein			Acetyl-CoA acetyltransferase	2.3.1.16	CDS	3-ketoacyl-CoA thiolase	2.3.1.16		0	0	base_ec	
putative transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
resolvase, N terminal domain protein			Predicted site-specific integrase-resolvase		CDS	Possible resolvase			0	0	0	
tRNA pseudouridine(55) synthase	5.4.99.25	truB	tRNA pseudouridine synthase B	5.4.99.25,4.2.1.70	CDS	tRNA pseudouridine synthase B	4.2.1.70		base_tigr	base_ec-d	base_lit-s	
4'-phosphopantetheinyl transferase superfamily protein			Phosphopantetheinyl transferase component of siderophore synthetase		CDS	4'-phosphopantetheinyl transferase EntD	2.7.8.-		0	tf_idf	0	
calcineurin-like phosphoesterase family protein			Predicted phosphohydrolases		CDS	putative SimX4 homolog			0	0	0	
putative conserved lipoprotein LppV			hypothetical protein		CDS	PROBABLE CONSERVED LIPOPROTEIN LPPV			base_one HP	lit-s	base_one HP	
cutinase family protein			Alpha/beta hydrolase.		CDS	FIG00822807: hypothetical protein			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821480: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3558).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
hydrolase CocE/NonD family protein			putative hydrolase, CocE/NonD family		CDS	Possible hydrolase			base_tigr	0	0	
mRNA interferase MazF9	3.1.-.-	mazF9	Growth inhibitor	3.1.-	CDS	Programmed cell death toxin YdcE			0	0	0	
antitoxin MazE9		mazE9	hypothetical protein		CDS	Programmed cell death antitoxin YdcD			base_one HP	0	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00823567: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820757: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
conserved hypothetical protein						GCN5-related N-acetyltransferase; Histone acetyltransferase HPA2 and related acetyltransferases			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821656: hypothetical protein			lit-s	base_one HP	base_one HP	
hypothetical protein						FIG00822506: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
integrase core domain protein			Integrase core domain.		CDS	Integrase core domain-containing protein			lit-s	lit-s	lit-s	
			hypothetical protein		CDS	FIG00822019: hypothetical protein			base_one HP	base_one miss	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00821734: hypothetical protein			base_lit-s	base_one HP	base_one HP	
transposase family protein						COG3464: Transposase and inactivated derivatives			base_one miss	0	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820260: hypothetical protein			lit-s	base_one HP	base_one HP	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
AAA domain protein			Type II secretory pathway, component ExeA (predicted ATPase)		CDS	"Type II secretory pathway, component ExeA"			0	0	gs-sh	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
CRISPR-associated endoribonuclease Cas2		cas2	CRISPR-associated protein, Cas2 family		CDS	CRISPR-associated protein Cas2			base_tigr	gs-sh	lit-s	
CRISPR-associated endonuclease Cas1	3.1.-.-	cas1	CRISPR-associated protein, Cas1 family		CDS	CRISPR-associated protein Cas1			base_tigr	gs-sh	lit-s	
CRISPR-associated family protein			CRISPR type III-A/MTUBE-associated protein Csm6		CDS	CRISPR-associated protein Csm6			0	0	0	
RAMP superfamily protein			CRISPR-associated protein, Csm5 family		CDS	"CRISPR-associated protein, Csm5 family"			0	0	lit-s	
conserved hypothetical protein			CRISPR-associated protein, Csm4 family		CDS	"CRISPR-associated RAMP protein, Csm4 family"			base_one HP	base_one HP	0	
RAMP superfamily protein			CRISPR-associated protein, Csm3 family		CDS	CRISPR-associated RAMP Csm3			map	pfam-sh	tf_idf	
conserved hypothetical protein			CRISPR type III-A/MTUBE-associated protein Csm2		CDS	"CRISPR-associated protein, Csm2 family"			base_one HP	base_one HP	0	
csm1 family CRISPR-associated protein		csm1	CRISPR-associated protein, Csm1 family		CDS	"CRISPR-associated protein, Csm1 family"			lit-s	lit-s	lit-s	
CRISPR-associated endoribonuclease Cas6	3.1.-.-	cas6	CRISPR-associated protein, Cas6 family		CDS	CRISPR repeat RNA endoribonuclease Cas6			base_tigr	pfam-sh	pfam-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820705: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00821357: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820907: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820705: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	COGs COG0840			base_one HP	base_one HP	0	
ribonuclease VapC22	3.1.-.-	vapC22	Uncharacterized protein conserved in bacteria		CDS	FIG00824270: hypothetical protein			0	0	lit-s	
antitoxin VapB22		vapB22	prevent-host-death family protein		CDS	FIG00821747: hypothetical protein			0	0	0	
echA16_2		echA16	Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		gs-sh	gs-sh	base_ec	
ABC transporter family protein			carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)	3.6.3.20	CDS	"Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3)"			0	tf_idf	0	
bacterial extracellular solute-binding family protein			carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)		CDS	"Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)"			0	0	0	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)		CDS	"Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3)"			0	0	0	
binding--dependent transport system inner membrane component family protein			carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)		CDS	"Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3)"			0	0	0	
MATE efflux family protein			putative efflux protein, MATE family		CDS	putative DNA-damage-inducible protein F			base_tigr	orth	map	
DHHA1 domain protein			Exopolyphosphatase-related proteins		CDS	"FIG146085: 3'-to-5' oligoribonuclease A, Bacillus type"			0	0	0	
ribosome-binding factor A		rbfA	ribosome-binding factor A		CDS	Ribosome-binding factor A			base_lit-s	lit-s	lit-s	
translation initiation factor IF-2		infB	bacterial translation initiation factor 2 (bIF-2)		CDS	Translation initiation factor 2			gs-sh	tf_idf	map	
putative translation initiation factor IF-2 infB						FIG00820868: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein						COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination			base_one HP	base_one HP	base_one miss	
transcription elongation protein nusA		nusA	NusA antitermination factor		CDS	Transcription termination protein NusA			gs-sh	gs-sh	pfam-sh	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG000325: clustered with transcription termination protein NusA			base_one HP	base_one HP	lit-s	
putative conserved transmembrane alanine rich protein			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE ALANINE RICH PROTEIN			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00999285: hypothetical protein			lit-s	base_one HP	base_one HP	
proline--tRNA ligase	6.1.1.15	proS	prolyl-tRNA synthetase (EC 6.1.1.15)	6.1.1.15	CDS	prolyl-tRNA synthetase( EC:6.1.1.15 )			base_tigr	gs-sh	gs-sh	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	EmrB/QacA family drug resistance transporter			0	0	0	
uroporphyrinogen-III C-methyltransferase	2.1.1.107	cobA	uroporphyrinogen-III C-methyltransferase	4.99.1.4, 2.1.1.107, 1.3.1.76,2.1.1.107	CDS	Siroheme synthase / Precorrin-2 oxidase / Sirohydrochlorin ferrochelatase / Uroporphyrinogen-III methyltransferase	1.3.1.76, 4.99.1.4, 2.1.1.107		base_lit-s	base_ec-d	base_ec-d	
cobyrinic acid a,c-diamide synthase	6.3.1.-	cobB	hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing) (EC 6.3.5.9)/cobyrinate a,c-diamide synthase (EC 6.3.5.11)	6.3.5.9, 6.3.5.11	CDS	"Cobyrinic acid A,C-diamide synthase"			base_tigr	lit-s	tf_idf	
cob(I)yrinic acid a,c-diamide adenosyltransferase	2.5.1.17	cobO	cob(I)yrinic acid a,c-diamide adenosyltransferase (EC 2.5.1.17)	2.5.1.17	CDS	Cob(I)alamin adenosyltransferase	2.5.1.17		base_tigr	base_ec	base_ec	
AAA domain family protein			Mg-chelatase subunit ChlI	6.6.1.1	CDS	ChlI component of cobalt chelatase involved in B12 biosynthesis / ChlD component of cobalt chelatase involved in B12 biosynthesis			0	0	pfam-sh	
acetyltransferase domain protein			Predicted acyltransferase		CDS	ElaA protein			map	gs-sh	gs-sh	
malate dehydrogenase	1.1.5.4	mqo	malate:quinone-oxidoreductase	1.1.5.4	CDS	Malate:quinone oxidoreductase	1.1.5.4		base_tigr	base_ec	base_ec	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
alpha/beta hydrolase family protein			Lysophospholipase		CDS	Lysophospholipase	3.1.1.5		0	0	base_lit-s	
mycothione reductase	1.8.1.15	mtr	mycothione reductase	1.8.1.7	CDS	NADPH-dependent mycothiol reductase Mtr			base_lit-s	gs-sh	orth	
high-affinity nickel transport protein		hoxN	high-affinity nickel-transporter, HoxN/HupN/NixA family		CDS	HoxN/HupN/NixA family nickel/cobalt transporter			gs-sh	0	0	
cobW/HypB/UreG, nucleotide-binding domain protein			Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase		CDS	[NiFe] hydrogenase nickel incorporation-associated protein HypB			gs-sh	gs-sh	gs-sh	
cobW/HypB/UreG, nucleotide-binding domain protein			Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase		CDS	[NiFe] hydrogenase nickel incorporation-associated protein HypB			gs-sh	gs-sh	gs-sh	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Short-chain dehydrogenase/reductase in hypothetical Actinobacterial gene cluster			0	0	0	
aldehyde dehydrogenase family protein			NAD-dependent aldehyde dehydrogenases	1.2.1.3	CDS	Aldehyde dehydrogenase in hypothetical Actinobacterial gene cluster			0	0	0	
glutamine amidotransferase class-I family protein			Predicted glutamine amidotransferases		CDS	COG2071: predicted glutamine amidotransferases in hypothetical Actinobacterial gene cluster			0	0	0	
glutamine synthetase, catalytic domain protein			L-glutamine synthetase (EC 6.3.1.2)	6.3.1.2	CDS	Glutamine synthetase family protein in hypothetical Actinobacterial gene cluster			0	0	0	
methionine aminopeptidase, type I	3.4.11.18	map	methionine aminopeptidase, type I (EC 3.4.11.18)	3.4.11.18	CDS	Methionine aminopeptidase	3.4.11.18		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Domain of unknown function (DUF1707).		CDS	FIG020268: hypothetical protein			base_one HP	base_one HP	lit-s	
putative antitoxin VapB23						FIG00825957: hypothetical protein			base_one miss	0	base_one miss	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	Putative uncharacterized protein BCG_2885			pfam-sh	0	0	
penicillin binding transpeptidase domain protein			Cell division protein FtsI/penicillin-binding protein 2		CDS	Cell division protein FtsI [Peptidoglycan synthetase]	2.4.1.129		0	0	gs-sh	
antitoxin RelF		relF	prevent-host-death family protein		CDS	RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE)			gs-sh	gs-sh	gs-sh	
toxin RelG	3.1.-.-	relG	Cytotoxic translational repressor of toxin-antitoxin stability system		CDS	RelE/StbE replicon stabilization toxin			0	0	gs-sh	
acetyltransferase family protein			Predicted acetyltransferase		CDS	"GCN5-related N-acetyltransferase, FIGfam019367"			lit-s	0	0	
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1.17.7.1	ispG	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	1.17.7.1,1.17.4.3	CDS	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	1.17.7.1		base_lit-s	base_ec	base_ec-d	
peptidase M50 family protein			Predicted membrane-associated Zn-dependent proteases 1		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			0	0	0	
1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267	dxr	1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.267)	1.1.1.267	CDS	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267		base_tigr	base_lit-s	base_ec	
antitoxin VapB43		vapB43				FIG00823326: hypothetical protein			base_one miss	0	base_one miss	
putative ribonuclease VapC43			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00821346: hypothetical protein			0	0	0	
immunogenic protein MPB70		mpb70	Secreted and surface protein containing fasciclin-like repeats		CDS	Immunogenic protein Mpt70			gs-sh	0	0	
putative antitoxin VapB5			prevent-host-death family protein		CDS	FIG00822496: hypothetical protein			0	0	0	
dipZ domain protein		dipZ				FIG00823410: hypothetical protein			base_one miss	0	base_one miss	
protein dipZ		dipZ	Cytochrome c biogenesis protein		CDS	DipZ protein			gs-sh	lit-s	map	
immunogenic protein MPB70		mpb70	Secreted and surface protein containing fasciclin-like repeats		CDS	Immunogenic protein Mpt70			gs-sh	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2631).		CDS	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	0	
cytochrome C biogenesis transmembrane region family protein			Cytochrome c biogenesis protein		CDS	1-deoxy-D-xylulose 5-phosphate reductoisomerase	1.1.1.267		tf_idf	0	0	
soluble secreted antigen MPT53		mpt53	Peroxiredoxin		CDS	Soluble secreted antigen MPT53 precursor			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein	2.1.1.192	CDS	Ribosomal RNA large subunit methyltransferase N	2.1.1.-		lit-s	base_one HP	base_one HP	
putative 23S rRNA methyltransferase						Ribosomal RNA large subunit methyltransferase N	2.1.1.-		base_one miss	0	base_one miss	
cytidylyltransferase family protein			CDP-diglyceride synthetase	2.7.7.41	CDS	Phosphatidate cytidylyltransferase	2.7.7.41		0	0	base_ec	
ribosome recycling factor		frr	ribosome recycling factor		CDS	Ribosome recycling factor			base_lit-s	lit-s	lit-s	
UMP kinase	2.7.4.22	pyrH	uridylate kinase (EC 2.7.4.22)	2.7.4.22	CDS	Uridylate kinase	2.7.4.-		base_tigr	gs-sh	lit-s	
transcriptional regulatory , C terminal family protein			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	Transcriptional regulatory protein glnR			0	0	gs-sh	
putative transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
resolvase, N terminal domain protein			Predicted site-specific integrase-resolvase		CDS	Resolvase			0	0	0	
marR family protein			Transcriptional regulators		CDS	"Transcriptional regulator, MarR family"			gs-sh	gs-sh	gs-sh	
amidase family protein			Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	Putative amidase amiC	3.5.1.4		map	gs-sh	base_ec	
translation elongation factor Ts		tsf	translation elongation factor Ts (EF-Ts)		CDS	Translation elongation factor Ts			base_tigr	lit-s	tf_idf	
ribosomal protein S2		rpsB	SSU ribosomal protein S2P		CDS	SSU ribosomal protein S2p (SAe)			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821596: hypothetical protein			lit-s	base_one HP	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
phage integrase family protein			tyrosine recombinase XerC subunit		CDS	Tyrosine recombinase XerC			orth	orth	lit-s	
putative F420-dependent oxidoreductase, MSMEG_2516 family protein			probable F420-dependent oxidoreductase, MSMEG_2516 family		CDS	POSSIBLE OXIDOREDUCTASE	1.-.-.-		base_tigr	0	0	
siderophore-interacting FAD-binding domain protein			Siderophore-interacting protein		CDS	Iron utilization protein			0	0	orth	
DNA protecting protein DprA		dprA	DNA protecting protein DprA		CDS	Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake			base_lit-s	0	0	
sigma-54 interaction domain protein			Mg chelatase-related protein		CDS	MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein			0	0	gs-sh	
conserved hypothetical protein			TIGR00252 family protein		CDS	Predicted endonuclease distantly related to archaeal Holliday junction resolvase			base_one HP	base_one HP	0	
formate dehydrogenase family accessory protein FdhD			formate dehydrogenase family accessory protein FdhD		CDS	Formate dehydrogenase chain D	1.2.1.2		base_lit-s	orth	orth	
molydopterin dinucleotide binding domain protein			oxidoreductase alpha (molybdopterin) subunit		CDS	Putative formate dehydrogenase oxidoreductase protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2469).		CDS	Protein often found in Actinomycetes clustered with signal peptidase and/or RNaseHII			base_one HP	base_one HP	0	
ribonuclease HII family protein			RNase HII (EC 3.1.26.4)	3.1.26.4	CDS	Ribonuclease HII	3.1.26.4		map	lit-s	base_ec	
signal peptidase I	3.4.21.89	lepB	signal peptidase I (EC:3.4.21.89). Serine peptidase. MEROPS family S26A	3.4.21.89	CDS	Signal peptidase I	3.4.21.89		base_tigr	base_ec	base_ec	
ribosomal protein L19		rplS	LSU ribosomal protein L19P		CDS	LSU ribosomal protein L19p			base_tigr	map	lit-s	
putative lipoprotein lppW			hypothetical protein		CDS	Putative lipoprotein lppW precursor			base_one HP	gs-sh	base_one HP	
tRNA (guanine(37)-N(1))-methyltransferase		trmD	tRNA (Guanine37-N(1)-) methyltransferase	2.1.1.31	CDS	tRNA (Guanine37-N1) -methyltransferase	2.1.1.31		base_tigr	gs-sh	base_ec	
16S rRNA processing protein RimM		rimM	16S rRNA processing protein RimM		CDS	16S rRNA processing protein RimM			base_lit-s	base_lit-s	base_lit-s	
conserved hypothetical protein			Predicted RNA-binding protein (contains KH domain)		CDS	KH domain RNA binding protein YlqC			base_one HP	base_one HP	0	
ribosomal protein S16		rpsP	SSU ribosomal protein S16P		CDS	SSU ribosomal protein S16p			base_tigr	orth	lit-s	
lumazine-binding family protein			SnoaL-like domain.		CDS	FIG00821456: hypothetical protein			0	0	0	
D-alanyl-D-alanine carboxypeptidase family protein			D-alanyl-D-alanine carboxypeptidase	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		lit-s	lit-s	base_lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
amidohydrolase family protein			N-acyl-D-aspartate/D-glutamate deacylase		CDS	N-acyl-D-glutamate amidohydrolase			orth	orth	orth	
serine/threonine-protein kinase pknF	2.7.11.1	pknF	Protein kinase domain.	2.7.11.1	CDS	Transmembrane serine/threonine-protein kinase I PknI	2.7.11.1		base_ec	base_ec	base_ec	
amidohydrolase family protein			Pro-Hyp dipeptidase. Metallo peptidase. MEROPS family M38		CDS	"Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific)"			0	0	0	
signal recognition particle protein		ffh	signal recognition particle subunit FFH/SRP54 (srp54)		CDS	"Signal recognition particle, subunit Ffh SRP54 (TC 3.A.5.1.1)"			base_tigr	tf_idf	pfam-sh	
DEAD/DEAH box helicase family protein			DNA or RNA helicases of superfamily II		CDS	DNA or RNA helicase of superfamily protein II			0	0	orth	
protein-P-II uridylyltransferase	2.7.7.59	glnD	UTP--GlnB (protein PII) uridylyltransferase, GlnD	2.7.7.59	CDS	[Protein-PII] uridylyltransferase	2.7.7.59		base_tigr	base_ec	base_ec	
nitrogen regulatory protein P-II		glnB	nitrogen regulatory protein P-II family		CDS	Nitrogen regulatory protein P-II			lit-s	lit-s	lit-s	
ammonium transporter family protein		amt	ammonium transporter (TC 1.A.11)		CDS	Ammonium transporter			base_tigr	lit-s	lit-s	
signal recognition particle-docking protein FtsY		ftsY	signal recognition particle-docking protein FtsY		CDS	Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1)			base_lit-s	gs-sh	gs-sh	
chromosome segregation protein SMC		smc	condensin subunit Smc		CDS	Chromosome partition protein smc			base_tigr	gs-sh	gs-sh	
acylphosphatase family protein			Acylphosphatases	3.6.1.7	CDS	"Acylphosphate phosphohydrolase, putative"	3.6.1.7		0	0	base_ec	
osmC-like family protein			Predicted redox protein, regulator of disulfide bond formation		CDS	FIG00997866: hypothetical protein			gs-sh	0	0	
formamidopyrimidine-DNA glycosylase	3.2.2.23	mutM	formamidopyrimidine-DNA glycosylase (fpg)	4.2.99.18, 3.2.2.23	CDS	Formamidopyrimidine-DNA glycosylase	3.2.2.23		base_tigr	base_ec	base_ec-d	
ribonuclease III	3.1.26.3	rnc	RNAse III (EC 3.1.26.3)	3.1.26.3	CDS	Ribonuclease III	3.1.26.3		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Predicted metal-binding, possibly nucleic acid-binding protein		CDS	"COG1399 protein, clustered with ribosomal protein L32p"			base_one HP	base_one HP	0	
ATP synthase B/B' CF family protein			Cell division initiation protein		CDS	Cell division initiation protein			0	0	base_lit-s	
alpha/beta hydrolase fold family protein			Predicted thioesterase involved in non-ribosomal peptide biosynthesis		CDS	Thioesterase TesA			0	0	gs-sh	
long-chain-fatty-acid--AMP ligase FadD26	6.2.1.-	fadD26	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsA	2.3.1.41	ppsA	Polyketide synthase modules and related proteins		CDS	Phenolpthiocerol synthesis polyketide synthase ppsA			gs-sh	gs-sh	gs-sh	
phthiocerol/phenolphthiocerol synthesis polyketide synthase type I PpsB	2.3.1.41	ppsB	Polyketide synthase modules and related proteins		CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		gs-sh	base_ec-d	0	
phthiocerol synthesis polyketide synthase type I PpsC	2.3.1.41	ppsC	Polyketide synthase modules and related proteins		CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		gs-sh	base_ec-d	0	
phthiocerol synthesis polyketide synthase type I PpsC	2.3.1.41	ppsC	Polyketide synthase modules and related proteins		CDS	PHENOLPTHIOCEROL SYNTHESIS TYPE-I POLYKETIDE SYNTHASE PPSD			gs-sh	0	0	
phthiocerol synthesis polyketide synthase type I PpsE	2.3.1.41	ppsE	Polyketide synthase modules and related proteins		CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		gs-sh	base_ec-d	0	
doxorubicin resistance ATP-binding protein DrrA	3.6.3.-	drrA	daunorubicin resistance ABC transporter ATP-binding subunit		CDS	Daunorubicin-DIM-transport ATP-binding protein ABC transporter DrrA			gs-sh	map	tf_idf	
doxorubicin resistance ABC transporter permease protein drrB		drrB	ABC transporter efflux protein, DrrB family		CDS	Daunorubicin-DIM-transport integral membrane protein ABC transporter DrrB			gs-sh	map	tf_idf	
daunorubicin resistance C family protein			daunorubicin resistance protein C		CDS	Daunorubicin-DIM-transport integral membrane protein ABC transporter DrrC			lit-s	map	orth	
condensation domain protein			Condensation domain.		CDS	Putative conserved polyketide synthase-associated protein PapA5			lit-s	0	0	
mycocerosic acid synthase	2.3.1.111	mas	Polyketide synthase modules and related proteins		CDS	putative mycocerosic synthase			gs-sh	gs-sh	map	
long-chain-fatty-acid--AMP ligase FadD28	6.2.1.-	fadD28	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
MMPL family protein			Predicted drug exporters of the RND superfamily		CDS	Putative membrane protein MmpL7			0	0	0	
conserved hypothetical protein						FIG00822453: hypothetical protein			base_one HP	base_one HP	base_one miss	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
istB-like ATP binding family protein			DNA replication protein		CDS	Mobile element protein			gs-sh	0	0	
putative lipoprotein lppX			Protein of unknown function (DUF1396).		CDS	Putative lipoprotein LppX precursor			gs-sh	tf_idf	0	
phenolphthiocerol synthesis polyketide synthase type I Pks15/1	2.3.1.41	pks15/1	KR domain./Alcohol dehydrogenase GroES-like domain./Acyl transferase domain./Zinc-binding dehydrogenase./Phosphopantetheine attachment site.		CDS	Malonyl CoA-acyl carrier protein transacylase	2.3.1.39		gs-sh	base_ec-d	0	
beta-ketoacyl synthase, C-terminal domain protein			Beta-ketoacyl synthase, C-terminal domain.		CDS	"(MTCY24G1.02), len: 496 aa, Probable polyketide synthase, almost identical to G560508 PKS002B (495 aa), fasta scores, opt: 3270, E(): 0, (99.6% identity in 496 aa overlap); contains PS00606 Beta-ketoacyl synthases active site; similar to MTCY338.20 (49.9% identity in 465 aa overlap) and MTCY24G1.09 (50.2% identity in 454 aa overlap) and MTCY22H8.03 (47.6% identity in 437 aa overlap)"			lit-s	0	0	
p-hydroxybenzoic acid--AMP ligase FadD22	6.2.1.-	fadD22	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II			pfam-sh	pfam-sh	lit-s	
			chorismate lyase	4.1.3.40	CDS				base_one miss	base_both miss	base_one miss	
long-chain-fatty-acid--AMP ligase FadD29	6.2.1.-	fadD29	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	"Long-chain fatty-acid-AMP ligase, Mycobacterial subgroup FadD29"			pfam-sh	pfam-sh	pfam-sh	
						FIG00820720: hypothetical protein			base_both miss	base_one miss	base_one miss	
luciferase-like monooxygenase family protein			Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	1.2.-	CDS	Phthiodiolone/phenolphthiodiolone dimycocerosates ketoreductase			0	0	0	
ubiE/COQ5 methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Phthiotriol/phenolphthiotriol dimycocerosates methyltransferase			gs-sh	0	0	
putative trans-acting enoyl reductase Rv2449c			Uncharacterized conserved protein	1.3.1.-	CDS	Trans-acting enoyl reductase			0	0	0	
methyltransferase domain protein			Dimethyladenosine transferase (rRNA methylation)		CDS	FIG00821261: hypothetical protein			0	0	0	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
methyltransferase, FkbM family domain protein			methyltransferase, FkbM family		CDS	"methyltransferase, FkbM family domain protein"			base_tigr	lit-s	lit-s	
methyltransferase FkbM domain protein			methyltransferase, FkbM family		CDS	gsc			lit-s	0	0	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	PGL/p-HBAD biosynthesis glycosyltransferase			0	0	0	
putative predicted protein						FIG00822491: hypothetical protein			base_one miss	lit-s	base_one miss	
PGL/p-HBAD biosynthesis glycosyltransferase Rv2958c/MT3034	2.4.1.-		Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	UDP-glucoronosyl and UDP-glucosyltransferases family protein			0	0	0	
cephalosporin hydroxylase family protein			Cephalosporin hydroxylase		CDS	POSSIBLE METHYLTRANSFERASE (METHYLASE)			lit-s	0	0	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	PROBABLE TRANSPOSASE			0	0	0	
PGL/p-HBAD biosynthesis glycosyltransferase Rv2958c/MT3034	2.4.1.-		Glycosyl transferases, related to UDP-glucuronosyltransferase		CDS	PGL/p-HBAD biosynthesis rhamnosyltransferase			0	0	0	
putative permease family protein			Predicted permeases		CDS	PROBABLE INTEGRAL MEMBRANE PROTEIN			0	0	orth	
formyltetrahydrofolate deformylase	3.5.1.10	purU	formyltetrahydrofolate deformylase (EC 3.5.1.10)	3.5.1.10	CDS	Formyltetrahydrofolate deformylase	3.5.1.10		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820984: hypothetical protein			lit-s	base_one HP	base_one HP	
pantetheine-phosphate adenylyltransferase	2.7.7.3	coaD	Phosphopantetheine adenylyltransferase (EC 2.7.7.3)	2.7.7.3	CDS	Phosphopantetheine adenylyltransferase	2.7.7.3		base_ec	base_ec	base_ec	
RNA methyltransferase, RsmD family	2.1.1.-		RNA methyltransferase, RsmD family		CDS	16S rRNA (guanine(966)-N(2))-methyltransferase ## SSU rRNA m(2)G966	2.1.1.171		base_lit-s	map	gs-sh	
pyruvate carboxylase	6.4.1.1	pyc	pyruvate carboxylase	6.4.1.1	CDS	Pyruvate carboxyl transferase	6.4.1.1		base_lit-s	base_ec	base_ec	
vitamin K epoxide reductase family protein			Predicted membrane protein		CDS	Putative ESX-1 secretion system component Rv3877			0	0	0	
thioredoxin family protein			Protein-disulfide isomerase		CDS	POSSIBLE CONSERVED MEMBRANE OR SECRETED PROTEIN			0	0	orth	
alpha/beta hydrolase fold family protein			Esterase/lipase	3.1.1.-	CDS	lipase-esterase (lipN)			0	0	gs-sh	
conserved hypothetical protein			Aldo/keto reductases, related to diketogulonate reductase		CDS	"putative oxidoreductase( EC:1.-,EC:1.1.1.274 )"			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF1524).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
ATP-dependent DNA helicase RecG	3.6.4.12	recG	ATP-dependent DNA helicase RecG	3.6.4.12,3.6.1.-	CDS	ATP-dependent DNA helicase RecG	3.6.1.-		base_lit-s	base_lit-s	base_lit-s	
dihydroxyacetone kinase family protein			DAK2 domain fusion protein YloV		CDS	Dihydroxyacetone kinase family protein			0	lit-s	0	
conserved hypothetical protein			hypothetical protein		CDS	Dihydroxyacetone kinase family protein			lit-s	base_one HP	base_one HP	
ribosomal protein L28		rpmB	ribosomal protein L28		CDS	LSU ribosomal protein L28p			base_lit-s	0	0	
uracil-DNA glycosylase	3.2.2.27	ung	Uracil-DNA glycosylase	3.2.2.27,3.2.2.-	CDS	"Uracil-DNA glycosylase, family 1"			base_tigr	gs-sh	tf_idf	
thiamine-monophosphate kinase	2.7.4.16	thiL	thiamine-phosphate kinase	2.7.4.16	CDS	Thiamine-monophosphate kinase	2.7.4.16		base_tigr	base_ec	base_ec	
putative transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
resolvase, N terminal domain protein			Predicted site-specific integrase-resolvase		CDS	Resolvase			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF3515).		CDS	Possible membrane protein			base_one HP	base_one HP	0	
D-alanine--D-alanine ligase	6.3.2.4	ddl	D-alanine--D-alanine ligase (EC 6.3.2.4)	6.3.2.4	CDS	D-alanine--D-alanine ligase	6.3.2.4		base_ec	base_lit-s	base_ec	
NAD-dependent glycerol-3-phosphate dehydrogenase family protein			glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC 1.1.1.94)	1.1.1.94	CDS	Glycerol-3-phosphate dehydrogenase [NAD(P)+]	1.1.1.94		map	tf_idf	base_ec	
2-phospho-L-lactate guanylyltransferase	2.7.7.68	cofC	2-phospho-L-lactate guanylyltransferase	2.7.7.68	CDS	2-phospho-L-lactate guanylyltransferase	2.7.7.68		base_lit-s	base_lit-s	base_lit-s	
polyphosphate kinase 1	2.7.4.1	ppk1	polyphosphate kinase 1	2.7.4.1	CDS	Polyphosphate kinase	2.7.4.1		base_lit-s	base_ec	base_ec	
NUDIX domain protein			ADP-ribose pyrophosphatase		CDS	Possible hydrolase mutT1	3.-.-.-		0	0	0	
conserved hypothetical protein			bacterial nucleoid protein Hbs		CDS	"DNA-binding protein HU / low-complexity, AKP-rich domain"			base_one HP	base_one HP	0	
3-isopropylmalate dehydratase small subunit	4.2.1.33	leuD	3-isopropylmalate dehydratase, small subunit	4.2.1.35, 4.2.1.33,4.2.1.33	CDS	3-isopropylmalate dehydratase small subunit	4.2.1.33		base_ec-d	base_lit-s	base_ec-d	
3-isopropylmalate dehydratase, large subunit	4.2.1.33	leuC	3-isopropylmalate dehydratase, large subunit	4.2.1.35, 4.2.1.33,4.2.1.33	CDS	3-isopropylmalate dehydratase large subunit	4.2.1.33		base_lit-s	base_ec	base_ec-d	
bacterial transcriptional regulator family protein			transcriptional regulator, IclR family		CDS	"Transcriptional regulator, IclR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	Putative uncharacterized protein BCG_3011c			lit-s	base_one HP	base_one HP	
						FIG00822238: hypothetical protein			base_both miss	base_one miss	base_one miss	
PPOX class putative F420-dependent enzyme family protein			PPOX class probable F420-dependent enzyme		CDS	FIG00820161: hypothetical protein			base_tigr	0	0	
glutamate--tRNA ligase	6.1.1.17	gltX	glutamyl-tRNA synthetase (EC 6.1.1.17)	6.1.1.17	CDS	Glutamyl-tRNA synthetase @ Glutamyl-tRNA(Gln) synthetase	6.1.1.17, 6.1.1.24		base_tigr	base_ec-d	base_ec-d	
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase			2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)		CDS	"2-hydroxyhepta-2,4-diene-1,7-dioate isomerase / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase"	5.3.3.-, 4.1.1.68		0	0	0	
3-isopropylmalate dehydrogenase	1.1.1.85	leuB	3-isopropylmalate dehydrogenase (EC 1.1.1.85)	1.1.1.85	CDS	3-isopropylmalate dehydrogenase	1.1.1.85		base_ec	base_lit-s	base_ec	
			Sugar phosphate permease		CDS				base_one miss	base_both miss	base_one miss	
phosphoglycerate dehydrogenase	1.1.1.95	serA	D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)	1.1.1.95	CDS	D-3-phosphoglycerate dehydrogenase	1.1.1.95		base_tigr	base_ec	base_ec	
NAD(P)-binding Rossmann-like domain protein			Phytoene dehydrogenase and related proteins		CDS	Phytoene dehydrogenase and related proteins			0	0	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820572: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Domain of Unknown Function (DUF1259).		CDS	Putative lipoprotein LppY			base_one HP	base_one HP	0	
conserved hypothetical protein			ABC-type uncharacterized transport system, permease component		CDS	YbbM seven transmembrane helix protein			base_one HP	base_one HP	0	
ketol-acid reductoisomerase	1.1.1.86	ilvC	ketol-acid reductoisomerase (EC 1.1.1.86)	1.1.1.86	CDS	Ketol-acid reductoisomerase	1.1.1.86		base_tigr	base_ec	base_ec	
acetolactate synthase, small subunit	2.2.1.6	ilvN	acetolactate synthase, small subunit (EC 2.2.1.6)	2.2.1.6	CDS	Acetolactate synthase small subunit	2.2.1.6		base_tigr	base_ec	base_ec	
acetolactate synthase, large subunit, biosynthetic type	2.2.1.6	ilvB	acetolactate synthase, large subunit (EC 2.2.1.6)	2.2.1.6	CDS	Acetolactate synthase large subunit	2.2.1.6		base_tigr	base_ec	base_ec	
low molecular weight protein antigen 6		cfp6	Protein of unknown function (DUF2581).		CDS	Low molecular weight protein antigen 6			gs-sh	lit-s	0	
doxX family protein			Predicted membrane protein		CDS	"Membrane protein 2, distant similarity to thiosulphate:quinone oxidoreductase DoxD"			gs-sh	0	0	
glucose / Sorbosone dehydrogenase family protein			Glucose/sorbosone dehydrogenases		CDS	"Glucose/sorbosone dehydrogenase, lipoprotein LppZ"			0	0	0	
flavin reductase like domain protein			Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	Oxidoreductase			0	0	0	
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit	6.3.5.-	gatB	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	6.3.5.7, 6.3.5.6,6.3.5.-	CDS	Aspartyl-tRNA(Asn) amidotransferase subunit B @ Glutamyl-tRNA(Gln) amidotransferase subunit B	6.3.5.6, 6.3.5.7		base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized membrane protein		CDS	FIG00820079: hypothetical protein			base_one HP	base_one HP	0	
6-phosphofructokinase	2.7.1.11	pfkA	6-phosphofructokinase (EC 2.7.1.11)	2.7.1.11	CDS	6-phosphofructokinase	2.7.1.11		base_ec	base_lit-s	base_ec	
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit	6.3.5.-	gatA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	6.3.5.6, 6.3.5.7,6.3.5.-	CDS	Aspartyl-tRNA(Asn) amidotransferase subunit A @ Glutamyl-tRNA(Gln) amidotransferase subunit A	6.3.5.6, 6.3.5.7		base_tigr	gs-sh	gs-sh	
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit	6.3.5.-	gatC	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	6.3.5.7, 6.3.5.6,6.3.5.-	CDS	Aspartyl-tRNA(Asn) amidotransferase subunit C @ Glutamyl-tRNA(Gln) amidotransferase subunit C	6.3.5.6, 6.3.5.7		base_tigr	gs-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
DNA ligase, NAD-dependent	6.5.1.2	ligA	DNA ligase, NAD-dependent	6.5.1.2	CDS	DNA ligase	6.5.1.2		base_lit-s	base_ec	base_ec	
cobalamin-independent synthase, Catalytic domain protein			Methionine synthase II (cobalamin-independent)		CDS	vitamin-B12 independent methionine synthase family protein			0	0	0	
pknH-like extracellular domain protein			PknH-like extracellular domain.		CDS	Lipoprotein LpqA			lit-s	0	0	
putative eSAT-6-like protein esxQ			Uncharacterized protein conserved in bacteria		CDS	ESAT-6-like protein EsxQ			gs-sh	lit-s	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
hypothetical protein			hypothetical protein		CDS	FIG00822816: hypothetical protein			base_lit-s	base_one HP	base_one HP	
ESAT-6-like protein esxR		esxR	WXG100 family type VII secretion target		CDS	10 kDa antigen CFP7			gs-sh	0	0	
pe family protein			Proteins of 100 residues with WXG.		CDS	PE family protein			0	lit-s	0	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	2.1.1.61	trmU	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	2.8.1.-,2.1.1.61	CDS	tRNA-specific 2-thiouridylase MnmA			base_lit-s	gs-sh	gs-sh	
aminotransferase class-V family protein			Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes	2.8.1.7	CDS	Cysteine desulfurase	2.8.1.7		0	0	base_ec	
acyltransferase family protein			lyso-ornithine lipid acyltransferase		CDS	1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51		orth	0	0	
acetyltransferase domain protein			ornithine-acyl[acyl carrier protein] N-acyltransferase		CDS	Putative hemolysin			0	0	0	
electron transfer flavodomain protein			electron transfer flavoprotein alpha subunit apoprotein		CDS	"Electron transfer flavoprotein, alpha subunit"			0	0	tf_idf	
electron transfer flavodomain protein			electron transfer flavoprotein beta subunit		CDS	"Electron transfer flavoprotein, beta subunit"			0	0	lit-s	
methyltransferase domain protein			Methyltransferase domain.		CDS	Methyltransferase	2.1.1.-		lit-s	lit-s	lit-s	
glycosyl hydrolase 57 family protein			Uncharacterized conserved protein	2.4.1.18	CDS	"Glycogen branching enzyme, GH-57-type, archaeal"	2.4.1.18		0	0	base_ec	
glycosyl transferases group 1 family protein			Glycosyltransferase	2.4.1.11	CDS	"Glycosyl transferase, group 1"			map	lit-s	orth	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820699: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4333).		CDS	FIG00820106: hypothetical protein			base_one HP	base_one HP	lit-s	
bacterial transferase hexapeptide family protein			Acetyltransferase (isoleucine patch superfamily)		CDS	Galactoside O-acetyltransferase	2.3.1.18		0	0	0	
immunogenic protein MPT64		mpt64	Protein of unknown function (DUF3298).		CDS	Possible membrane protein			gs-sh	0	0	
PQQ enzyme repeat family protein			FOG: WD40-like repeat		CDS	FIG00995884: hypothetical protein			0	0	0	
putative sAM-dependent methyltransferase			hypothetical protein		CDS	Methyltransferase	2.1.1.-		base_one HP	0	base_one HP	
ubiE/COQ5 methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase domain			gs-sh	gs-sh	map	
enoyl-CoA hydratase/isomerase family protein			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		map	tf_idf	base_ec	
NUDIX domain protein			NUDIX domain.		CDS	FIG00996530: hypothetical protein			lit-s	0	0	
ABC transporter family protein			ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA	3.6.3.34	CDS	ABC transporter ATP-binding protein			map	tf_idf	orth	
phosphoserine phosphatase SerB	3.1.3.3	serB	phosphoserine phosphatase (EC 3.1.3.3)	3.1.3.3	CDS	Phosphoserine phosphatase	3.1.3.3		base_ec	base_ec	base_ec	
cytochrome c oxidase, subunit I	1.9.3.1	ctaD	cytochrome c oxidase, subunit I	1.9.3.1	CDS	Cytochrome c oxidase polypeptide I	1.9.3.1		base_lit-s	base_ec	base_ec	
conserved hypothetical protein						FIG00824201: hypothetical protein			base_one HP	base_one HP	base_one miss	
periplasmic binding family protein			ABC-type Fe3+-hydroxamate transport system, periplasmic component		CDS	"Iron(III) dicitrate transport system, periplasmic iron-binding protein FecB (TC 3.A.1.14.1)"			0	0	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF3349).		CDS	FIG00822200: hypothetical protein			base_one HP	base_one HP	lit-s	
NADP-dependent alcohol dehydrogenase C	1.1.1.2	adhC	Zn-dependent alcohol dehydrogenases	1.-	CDS	Cinnamyl alcohol dehydrogenase/reductase @ Alcohol dehydrogenase	1.1.1.195, 1.1.1.1		gs-sh	base_ec-d	0	
putative predicted protein						FIG00822353: hypothetical protein			base_one miss	lit-s	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821545: hypothetical protein			lit-s	base_one HP	base_one HP	
ribonucleoside-diphosphate reductase subunit beta nrdF2	1.17.4.1	nrdF2	ribonucleoside-diphosphate reductase class Ib beta subunit (EC 1.17.4.1)	1.17.4.1	CDS	"Ribonucleotide reductase of class Ib (aerobic), beta subunit"	1.17.4.1		base_ec	base_ec	base_ec	
pyridine nucleotide-disulfide oxidoreductase family protein			Predicted flavoprotein involved in K+ transport		CDS	"Monooxygenase, flavin-binding family"			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
ribonucleoside-diphosphate reductase, alpha subunit	1.17.4.1		ribonucleoside-diphosphate reductase class Ib alpha subunit (EC 1.17.4.1)	1.17.4.1	CDS	"Ribonucleotide reductase of class Ib (aerobic), alpha subunit"	1.17.4.1		base_ec	base_ec	base_ec	
nrdI protein		nrdI	ribonucleoside-diphosphate reductase 2, operon protein nrdI		CDS	Ribonucleotide reduction protein NrdI			base_tigr	0	0	
nrdH-redoxin		nrdH	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit	1.17.4.1	CDS	"Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib"			gs-sh	0	0	
NADPH-dependent FMN reductase family protein			Predicted flavoprotein		CDS	NADPH:quinone oxidoreductase			0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
impB/mucB/samB family protein			Nucleotidyltransferase/DNA polymerase involved in DNA repair	2.7.7.7	CDS	DNA polymerase-like protein MT3142			gs-sh	0	0	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	Short chain dehydrogenase			0	lit-s	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
cytochrome P450 family protein			Cytochrome P450		CDS	Cytochrome P450 136			lit-s	tf_idf	tf_idf	
putative predicted protein						FIG00820792: hypothetical protein			base_one miss	lit-s	base_one miss	
bacterial regulatory s, gntR family protein			transcriptional regulator, GntR family		CDS	"Transcriptional regulator, GntR family"			gs-sh	gs-sh	lit-s	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Butyryl-CoA dehydrogenase	1.3.99.2		0	0	0	
DNA ligase I, ATP-dependent family protein	6.5.1.1		DNA ligase I, ATP-dependent (dnl1)	6.5.1.1	CDS	ATP-dependent DNA ligase	6.5.1.1		base_tigr	base_ec	base_ec	
carbon starvation CstA family protein			Carbon starvation protein, predicted membrane protein		CDS	Carbon starvation protein A			gs-sh	tf_idf	tf_idf	
doxX family protein			Predicted membrane protein		CDS	Possible membrane protein			gs-sh	map	lit-s	
multidrug transporter emrE		emrE	Membrane transporters of cations and cationic drugs		CDS	Multidrug resistance protein mmr			gs-sh	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	FIG00823332: hypothetical protein			base_one HP	base_one HP	lit-s	
phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	pgm	phosphoglucomutase, alpha-D-glucose phosphate-specific	5.4.2.2	CDS	Phosphoglucomutase	5.4.2.2		base_lit-s	base_ec	base_ec	
crcB-like family protein			camphor resistance protein CrcB		CDS	Protein CrcB homolog 1			gs-sh	gs-sh	gs-sh	
crcB-like family protein			camphor resistance protein CrcB		CDS	Protein CrcB homolog 2			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00822056: hypothetical protein			base_one HP	base_one HP	lit-s	
luciferase-like monooxygenase family protein			Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases		CDS	Probable F420-dependent oxidoreductase family protein			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG016027: protein of unknown function YeaO			base_one HP	base_one HP	0	
hpcH/HpaI aldolase/citrate lyase family protein			Citrate lyase beta subunit	4.1.3.6, 4.1.3.34	CDS	Citrate lyase beta chain	4.1.3.6		gs-sh	0	base_ec-d	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	FIG029007: hypothetical protein			base_one HP	base_one HP	lit-s	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00820680: hypothetical protein			lit-s	0	0	
sulfatase family protein			Arylsulfatase A and related enzymes		CDS	Choline-sulfatase	3.1.6.6		orth	0	0	
putative membrane protein			hypothetical protein		CDS	Hydroxylaminobenzene mutase hab			base_one HP	0	base_one HP	
putative F420-dependent oxidoreductase, Rv2161c family domain protein			probable F420-dependent oxidoreductase, Rv2161c family		CDS	Probable F420-dependent oxidoreductase family protein			base_tigr	0	0	
serine/threonine-protein kinase pknK	2.7.11.1	pknK	ATP-dependent transcriptional regulator	2.7.11.1	CDS	"Transcriptional activator of maltose regulon, MalT"			base_ec	gs-sh	gs-sh	
conserved hypothetical protein			Nucleotidyl transferase of unknown function (DUF2204).		CDS	FIG00820344: hypothetical protein			base_one HP	base_one HP	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator, AraC family"			pfam-sh	pfam-sh	lit-s	
pyridine nucleotide-disulfide oxidoreductase family protein			Predicted flavoprotein involved in K+ transport		CDS	"Monooxygenase, flavin-binding family"			0	0	0	
alpha/beta hydrolase fold family protein			Esterase/lipase	3.1.1.-	CDS	Esterase/lipase			0	0	base_lit-s	
short chain dehydrogenase family protein			Short-chain alcohol dehydrogenase of unknown specificity		CDS	PROBABLE SHORT-CHAIN TYPE DEHYDROGENASE/REDUCTASE	1.-.-.-		0	0	0	
NDMA-dependent alcohol dehydrogenase, Rxyl_3153 family protein	1.1.99.36		oxidoreductase, Rxyl_3153 family	1.1.1.284, 1.1.1.1	CDS	Alcohol dehydrogenase	1.1.1.1		base_tigr	base_ec-d	base_ec-d	
acyltransferase, WS/DGAT/MGAT family protein	2.3.1.-		Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			base_tigr	0	0	
putative diacyglycerol O-acyltransferase tgs4			Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			0	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
			hypothetical protein		CDS	FIG00821784: hypothetical protein			base_one HP	base_one miss	base_one HP	
SPFH domain / Band 7 family protein			Membrane protease subunits, stomatin/prohibitin homologs		CDS	FIG00821598: hypothetical membrane protein			0	0	0	
patatin-like phospholipase family protein			Predicted esterase of the alpha-beta hydrolase superfamily		CDS	FIG00822615: hypothetical protein			0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	"Membrane protein, putative"			base_one HP	base_one HP	0	
putative F420-dependent oxidoreductase, Rv3093c family protein			probable F420-dependent oxidoreductase, Rv3093c family		CDS	putative oxidoreductase			base_tigr	0	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Pigment protein			0	0	0	
hxlR-like helix-turn-helix family protein			transcriptional regulator, HxlR family		CDS	"Transcriptional regulator, HxlR family"			gs-sh	map	lit-s	
cellulase family protein			Endo-beta-mannanase		CDS	"NADH:flavin oxidoreductases, Old Yellow Enzyme family"			0	0	0	
alpha/beta hydrolase fold family protein			Esterase/lipase		CDS	"(MTCY164.08c), len: 436. Esterase/lipase, identical to TR:P77909 (EMBL:U76006) ESTERASE/LIPASE (TRIACYLGLYCEROL LIPASE) (437 aa); N-terminal similar to N-terminal of M. tuberculosis PE family members, eg Y03A_MYCTU Q10637 hypothetical glycine-rich 49.6 kd pro (603 aa), fasta scores, opt: 334 E(): 4.8e-13, (43.4% identity in 152 aa overlap). Other relatives include MTCY1A11.25c, 7.8e-14; MTCY21B4.13c, 2.4e-12; MTCY270.06, 5.4e-12; MTCY359.33, 1.2e-11; MTC1A11.04, 1.2ee-11; cY130.seq, 1.3e-11"	3.1.1.3		0	0	0	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822995: hypothetical protein			lit-s	base_one HP	base_one HP	
pemK-like family protein			Growth inhibitor	3.1.-	CDS	PemK			gs-sh	gs-sh	gs-sh	
									base_both miss	base_both miss	base_both miss	
conserved hypothetical protein			uncharacterized Actinobacterial protein TIGR03083		CDS	FIG00822482: hypothetical protein			base_one HP	base_one HP	0	
ssrA-binding protein		smpB	SsrA-binding protein		CDS	tmRNA-binding protein SmpB			base_tigr	gs-sh	gs-sh	
ftsX-like permease family protein			cell division protein FtsX		CDS	Cell division protein FtsX			gs-sh	gs-sh	lit-s	
cell division ATP-binding protein FtsE		ftsE	cell division ATP-binding protein FtsE		CDS	"Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1)"			base_lit-s	gs-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
mechanosensitive ion channel family protein			Small-conductance mechanosensitive channel		CDS	Potassium efflux system KefA protein / Small-conductance mechanosensitive channel			0	0	0	
peptide chain release factor 2		prfB	bacterial peptide chain release factor 2 (bRF-2)		CDS	Peptide chain release factor 2			base_tigr	lit-s	tf_idf	
NADPH-ferredoxin reductase fprA	1.18.1.2	fprA	NADPH-dependent glutamate synthase beta chain and related oxidoreductases	1.18.1.2	CDS	"Ferredoxin--NADP(+) reductase, actinobacterial (eukaryote-like) type"	1.18.1.2		base_ec	base_ec	base_ec	
FAD linked oxidase, C-terminal domain protein			FAD/FMN-containing dehydrogenases	2.5.1.26	CDS	Alkyldihydroxyacetonephosphate synthase	2.5.1.26		0	0	base_ec	
putative membrane protein			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
molybdenum cofactor biosynthesis protein A		moaA	cyclic pyranopterin monophosphate synthase subunit MoaA	4.1.99.18	CDS	Molybdenum cofactor biosynthesis protein MoaA			base_tigr	gs-sh	gs-sh	
pterin 4 alpha carbinolamine dehydratase family protein			pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)	4.2.1.96	CDS	Pterin-4-alpha-carbinolamine dehydratase	4.2.1.96		0	0	base_ec	
molybdenum cofactor biosynthesis protein C		moaC	cyclic pyranopterin monophosphate synthase subunit MoaC	4.1.99.18	CDS	Molybdenum cofactor biosynthesis protein MoaC			base_tigr	gs-sh	pfam-sh	
			molybdopterin converting factor, subunit 1, non-archaeal		CDS				base_one miss	base_both miss	base_one miss	
HAD hydrolase, IA, variant 1 family protein			haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	"hydrolase, haloacid dehalogenase-like family"			base_tigr	0	0	
hypothetical protein						FIG00820842: hypothetical protein			base_one HP	base_one HP	base_one miss	
			Cytosine/adenosine deaminases		CDS				base_one miss	base_both miss	base_one miss	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
putative adenylyltransferase/sulfurtransferase MoeZ			Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	Sulfur carrier protein adenylyltransferase ThiF			0	0	gs-sh	
putative thiosulfate sulfurtransferase			thiosulfate sulfurtransferase	2.8.1.2, 2.8.1.1,2.8.1.1	CDS	"Thiosulfate sulfurtransferase, rhodanese"	2.8.1.1		lit-s	tf_idf	base_ec-d	
conserved hypothetical protein			Protein of unknown function (DUF1416).		CDS	probable sseC protein			base_one HP	base_one HP	gs-sh	
molybdopterin synthase catalytic subunit	2.-.-.-	moaE1	Molybdopterin converting factor, large subunit	2.-	CDS	Molybdenum cofactor biosynthesis protein MoaE; Molybdopterin converting factor subunit 2			gs-sh	0	0	
methyltransferase domain protein			Methyltransferase domain.		CDS	Possible methyltransferase	2.1.1.-		lit-s	lit-s	lit-s	
cytochrome P450 family protein			Cytochrome P450		CDS	"Thiosulfate sulfurtransferase, rhodanese"	2.8.1.1		lit-s	0	0	
transposase IS200-family domain protein						hypothetical protein			base_one miss	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820138: hypothetical protein			lit-s	base_one HP	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
transcriptional regulatory , C terminal family protein			DNA-binding transcriptional activator of the SARP family		CDS	"transcriptional regulator, AfsR/DnrI/RedD family"			0	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein						FIG00820866: hypothetical protein			base_one HP	base_one HP	base_one miss	
						FIG00823168: hypothetical protein			base_both miss	base_one miss	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822544: hypothetical protein			lit-s	base_one HP	base_one HP	
nitroreductase family protein			hypothetical protein		CDS	Oxygen-insensitive NADPH nitroreductase	1.-.-.-		base_one HP	0	base_one HP	
putative rv3128c-like protein			hypothetical protein		CDS	Mobile element protein			base_one HP	0	base_one HP	
putative diacyglycerol O-acyltransferase tgs1			Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			0	0	0	
conserved hypothetical protein			Pyridoxamine 5'-phosphate oxidase		CDS	probable DNA-binding protein			base_one HP	base_one HP	0	
response regulator	2.7.13.3	devS	Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./GAF domain.	2.7.13.3	CDS	Two component system sensor histidine kinase DevS			base_ec	gs-sh	map	
putative NAD(P)H nitroreductase RV3131/MT3217			Nitroreductase		CDS	Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2			0	0	0	
transcriptional regulatory protein devR		devR	two component transcriptional regulator, LuxR family		CDS	Two component transcriptional regulatory protein DevR			gs-sh	map	orth	
universal stress family protein			Universal stress protein UspA and related nucleotide-binding proteins		CDS	Universal stress protein family			0	lit-s	0	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
histidinol-phosphatase	3.1.3.15	hisN	histidinol-phosphate phosphatase (EC 3.1.3.15)	3.1.3.15	CDS	Histidinol-phosphatase [alternative form]	3.1.3.15		base_tigr	base_ec	base_ec	
radical SAM superfamily protein			Pyruvate-formate lyase-activating enzyme	1.97.1.4	CDS	"COG1180: Radical SAM, Pyruvate-formate lyase-activating enzyme like"			0	tf_idf	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	"Acyl-CoA dehydrogenase, short-chain specific"	1.3.99.2		0	0	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases	1.3.99.3	CDS	Probable acyl-CoA dehydrogenase	1.3.99.3		map	lit-s	base_ec	
zinc-binding dehydrogenase family protein			NADPH:quinone reductase and related Zn-dependent oxidoreductases	1.6.5.5	CDS	PROBABLE NADPH QUINONE OXIDOREDUCTASE FADB4 (NADPH:QUINONE REDUCTASE) (ZETA-CRYSTALLIN)	1.6.5.5		0	0	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820149: hypothetical protein			lit-s	base_one HP	base_one HP	
response regulator			hypothetical protein		CDS	Probable response regulator			base_one HP	lit-s	base_one HP	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 family protein			NADH dehydrogenase subunit A (EC 1.6.5.3)	1.6.5.3	CDS	NADH ubiquinone oxidoreductase chain A	1.6.5.3		0	0	base_ec	
NADH-quinone oxidoreductase, B subunit			NADH dehydrogenase subunit B (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain B	1.6.5.3		base_tigr	map	base_ec	
NADH-quinone oxidoreductase subunit C	1.6.99.5	nuoC	NADH dehydrogenase subunit C (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain C	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH dehydrogenase (quinone), D subunit	1.6.99.5	nuoD	NADH dehydrogenase subunit D (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain D	1.6.5.3		base_tigr	base_ec-d	base_ec	
NADH-quinone oxidoreductase subunit E	1.6.99.5	nuoE	NADH dehydrogenase subunit E (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain E	1.6.5.3		base_ec-d	base_ec-d	base_ec	
NADH oxidoreductase (quinone), F subunit	1.6.99.5	nuoF	NADH dehydrogenase subunit F (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain F	1.6.5.3		base_tigr	base_ec-d	base_ec	
NADH dehydrogenase (quinone), G subunit	1.6.99.5	nuoG	NADH dehydrogenase subunit G (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain G	1.6.5.3		base_tigr	base_ec-d	base_ec	
NADH dehydrogenase family protein			NADH dehydrogenase subunit H (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain H	1.6.5.3		0	0	base_ec	
NADH-quinone oxidoreductase, chain I family protein			NADH dehydrogenase subunit I (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain I	1.6.5.3		base_tigr	map	base_ec	
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 family protein			NADH dehydrogenase subunit J (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain J	1.6.5.3		0	0	base_ec	
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L family protein			NADH dehydrogenase subunit K (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain K	1.6.5.3		0	0	base_ec	
proton-translocating NADH-quinone oxidoreductase, chain L family protein	1.6.-.-		NADH dehydrogenase subunit L (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain L	1.6.5.3		base_tigr	map	base_ec	
proton-translocating NADH-quinone oxidoreductase, chain M family protein			NADH dehydrogenase subunit M (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain M	1.6.5.3		base_tigr	map	base_ec	
proton-translocating NADH-quinone oxidoreductase, chain N family protein			NADH dehydrogenase subunit N (EC 1.6.5.3)	1.6.5.3	CDS	NADH-ubiquinone oxidoreductase chain N	1.6.5.3		base_tigr	map	base_ec	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
rieske [2Fe-2S] domain protein			Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit		CDS	"Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit"			0	0	lit-s	
putative membrane protein			hypothetical protein		CDS	Possible membrane protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)		CDS	POSSIBLE CONSERVED SECRETED PROTEIN			base_one HP	base_one HP	0	
AAA domain family protein			MoxR-like ATPases	3.6.3.-	CDS	Probable methanol dehydrogenase transcriptional regulatory protein MoxR3			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00997183: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4129).		CDS	FIG00995849: hypothetical protein			base_one HP	base_one HP	lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
phosphotransferase enzyme family protein			Predicted aminoglycoside phosphotransferase		CDS	Phosphotransferase			tf_idf	lit-s	tf_idf	
conserved hypothetical protein			hypothetical protein		CDS	Putative uncharacterized protein BCG_3193			lit-s	base_one HP	base_one HP	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Non-heme haloperoxidase Hpx			0	0	0	
FAD binding domain protein			Monoamine oxidase	1.4.3.4	CDS	Amine oxidase [flavin-containing] A	1.4.3.4		0	0	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
short chain dehydrogenase family protein			Short-chain dehydrogenases of various substrate specificities		CDS	Putative oxidoreductase			orth	0	0	
alpha/beta hydrolase family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Epoxide hydrolase	3.3.2.9		0	0	0	
amidase family protein			Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	putative amidase			0	lit-s	0	
dienelactone hydrolase family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	1.11.1.-	CDS	"hydrolase, alpha/beta hydrolase fold family"			0	0	0	
deazaflavin-dependent oxidoreductase, nitroreductase family protein			deazaflavin-dependent nitroreductase family protein		CDS	AclJ			base_tigr	0	0	
hypothetical protein						FIG00821191: hypothetical protein			base_one HP	base_one HP	base_one miss	
putative alanine rich protein						FIG00820682: hypothetical protein			base_one miss	0	base_one miss	
AAA domain protein			Predicted ATPase (AAA+ superfamily)		CDS	ATPase			0	0	0	
PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG035400: Hypothetical protein			pfam-sh	0	0	
prevent-host-death family protein			prevent-host-death family protein		CDS	FIG031049: Hypothetical protein			base_lit-s	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG032362: Hypothetical protein			base_one HP	base_one HP	lit-s	
helix-turn-helix family protein			Predicted transcriptional regulator with C-terminal CBS domains		CDS	"FIG036183: Transcriptional regulator, XRE family"			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2384).		CDS	FIG046480: Hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG043360: Hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG030803: Hypothetical protein			lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG069748: Hypothetical protein			base_lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG064496: Hypothetical protein			base_lit-s	base_one HP	base_one HP	
integrase core domain protein			Transposase and inactivated derivatives, IS30 family		CDS	PROBABLE TRANSPOSASE			0	0	0	
conserved hypothetical protein						hypothetical protein			base_one HP	lit-s	base_one HP	
luciferase-like monooxygenase family protein			Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases		CDS	Oxidoreductase	1.1.1.-		0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	INTEGRAL MEMBRANE PROTEIN (Rhomboid family)			base_one HP	base_one HP	0	
hypothetical protein			hypothetical protein		CDS	FIG00826712: hypothetical protein			base_lit-s	base_one HP	base_one HP	
lon protease (S16) C-terminal proteolytic domain protein			Predicted secreted protein containing a PDZ domain		CDS	Lon-like protease with PDZ domain			0	0	pfam-sh	
hydrolase family protein			putative hydrolase		CDS	Collagen alpha 1(I) chain precursor			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822196: hypothetical protein			lit-s	base_one HP	base_one HP	
putative conserved protein			hypothetical protein		CDS	FIG00822846: hypothetical protein			base_one HP	lit-s	base_one HP	
phosphotransferase enzyme family protein			Predicted unusual protein kinase		CDS	Ubiquinone biosynthesis monooxygenase UbiB			0	0	gs-sh	
AT hook motif family protein			Transcription factor WhiB./AT hook motif.		CDS	WhiB-family transcriptional regulator			0	0	0	
uvrD/REP helicase N-terminal domain protein			ATP-dependent DNA helicase, Rep family	3.6.4.12	CDS	"ATP-dependent DNA helicase UvrD/PcrA, actinomycete paralog"			gs-sh	gs-sh	gs-sh	
glutaredoxin family protein			Glutaredoxin-like protein		CDS	POSSIBLE GLUTAREDOXIN PROTEIN			map	lit-s	orth	
NUDIX domain protein			NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding	3.6.1.22	CDS	NADH pyrophosphatase	3.6.1.22		0	0	base_ec	
trkA-N domain protein			K+ transport systems, NAD-binding component		CDS	Potassium channel protein			gs-sh	gs-sh	map	
uvrD/REP helicase N-terminal domain protein			Superfamily I DNA and RNA helicases	3.6.4.12	CDS	ATP-dependent DNA helicase SCO5184			gs-sh	tf_idf	map	
uvrD/REP helicase N-terminal domain protein			Superfamily I DNA and RNA helicases		CDS	ATP-dependent DNA helicase SCO5183			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823358: hypothetical protein			lit-s	base_one HP	base_one HP	
esterase family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	possible lipase			0	0	0	
6-O-methylguanine DNA methyltransferase, DNA binding domain protein			O(6)-alkylguanine repair protein YbaZ		CDS	Methylated DNA-protein cysteine methyltransferase			0	0	0	
putative aminoglycoside phosphotransferase			hypothetical protein		CDS	FIG00994019: hypothetical protein			base_one HP	0	base_one HP	
putative adenylyltransferase/sulfurtransferase MoeZ			Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2		CDS	Sulfur carrier protein adenylyltransferase ThiF			0	0	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF3152).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3107).		CDS	putative ATP-binding protein			base_one HP	base_one HP	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
putative hrpA-like helicase			hypothetical protein		CDS	FIG00819977: hypothetical protein			base_one HP	0	base_one HP	
mycobacterium membrane family protein			Mycobacterium membrane protein.		CDS	putative membrane protein			lit-s	0	0	
tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like family protein			Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA		CDS	hypothetical protein			gs-sh	base_one HP	base_one HP	
helicase conserved C-terminal domain protein			Superfamily II DNA and RNA helicases		CDS	putative ATP-dependent RNA helicase			0	0	orth	
putative conserved alanine and valine rich protein			hypothetical protein		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	0	base_one HP	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj			gs-sh	pfam-sh	gs-sh	
histidine phosphatase super family protein			Fructose-2,6-bisphosphatase	5.4.2.1	CDS	putative phosphoglycerate mutase family protein			0	0	0	
isochorismate synthase dhbC	5.4.4.2	dhbC	isochorismate synthase (EC 5.4.4.2)	5.4.4.2	CDS	Isochorismate synthase	5.4.4.2		base_ec	base_ec	base_ec	
putative membrane protein			hypothetical protein		CDS	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN			base_one HP	orth	base_one HP	
acetyltransferase family protein			Acetyltransferases		CDS	Diamine acetyltransferase	2.3.1.57		0	0	0	
diacylglycerol kinase catalytic domain protein			Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase		CDS	Transcription regulator [contains diacylglycerol kinase catalytic domain]			0	tf_idf	0	
transcription factor WhiB family protein			transcription factor WhiB		CDS	WhiB-like transcription regulator			lit-s	0	0	
putative sensor histidine kinase pdtaS			Signal transduction histidine kinase		CDS	"Signal transduction histidine kinase, subgroup 2"			tf_idf	0	0	
biotinylated protein TB7.3			Pyruvate carboxylase		CDS	Biotin carboxyl carrier protein			0	orth	0	
			mycothiol system anti-sigma-R factor		CDS	Anti-sigma factor			base_one miss	base_one miss	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821786: hypothetical protein			lit-s	base_one HP	base_one HP	
RNA polymerase sigma factor		sigR	RNA polymerase sigma-70 factor, TIGR02947 family		CDS	RNA polymerase sigma factor RpoE			gs-sh	gs-sh	gs-sh	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Short-chain dehydrogenase/reductase SDR			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00823618: hypothetical protein			lit-s	base_one HP	base_one HP	
acetyltransferase family protein			Predicted aminoglycoside phosphotransferase		CDS	Putative phosphotransferase			0	0	tf_idf	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG00996837: hypothetical protein			base_one HP	base_one HP	lit-s	
3-phosphoshikimate 1-carboxyvinyltransferase	2.5.1.19	aroA	3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)	2.5.1.19	CDS	5-Enolpyruvylshikimate-3-phosphate synthase	2.5.1.19		base_tigr	base_ec	base_ec	
ribosome small subunit-dependent GTPase A	3.6.-.-	rsgA	ribosome small subunit-dependent GTPase A	3.6.1.-	CDS	Ribosome small subunit-stimulated GTPase EngC			base_lit-s	0	0	
stearoyl-CoA 9-desaturase		desA3	Fatty acid desaturase	1.14.19.3	CDS	POSSIBLE LINOLEOYL-CoA DESATURASE (DELTA(6)-DESATURASE)			gs-sh	0	0	
stearoyl-CoA 9-desaturase electron transfer partner			Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1			0	0	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00996471: hypothetical protein			lit-s	base_one HP	base_one HP	
polyphosphate kinase 2	2.7.4.1	ppk2	polyphosphate kinase 2, PA0141 family		CDS	UDP-galactose-lipid carrier transferase	2.-.-.-		base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			lit-s	base_one HP	base_one HP	
putative diacyglycerol O-acyltransferase tgs3			Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820824: hypothetical protein			lit-s	base_one HP	base_one HP	
sodium/hydrogen exchanger family protein			potassium/proton antiporter membrane subunit, CPA2 family (TC 2.A.37.5.2)		CDS	putative transmembrane transport protein			0	0	0	
trkA-C domain protein			potassium/proton antiporter regulatory subunit, CPA2 family (TC 2.A.37.5.2)		CDS	"TrkA, Potassium channel"			gs-sh	gs-sh	gs-sh	
nnrU family protein			Putative protein-S-isoprenylcysteine methyltransferase		CDS	putative conserved integral membrane protein			gs-sh	0	0	
H+ antiporter-2 family protein			drug resistance transporter, EmrB/QacA subfamily		CDS	Multidrug resistance protein B			base_tigr	0	0	
preprotein translocase, SecA subunit		secA	protein translocase subunit secA		CDS	Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1)			base_tigr	gs-sh	gs-sh	
ribosomal subunit interface protein		raiA	ribosomal subunit interface protein		CDS	Ribosomal subunit interface protein			base_lit-s	lit-s	lit-s	
phosphoribosyl transferase domain protein			Predicted amidophosphoribosyltransferases		CDS	"Competence protein F homolog, phosphoribosyltransferase domain; protein YhgH required for utilization of DNA as sole source of carbon and energy"			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2993).		CDS	FIG00820662: hypothetical protein			base_one HP	base_one HP	lit-s	
lipoLpqB beta-propeller domain protein			Sporulation and spore germination./Lipoprotein LpqB beta-propeller domain.		CDS	LpqB			0	0	0	
HAMP domain protein			Signal transduction histidine kinase	2.7.13.3	CDS	Sensor histidine kinase MtrB	2.7.3.-		gs-sh	gs-sh	gs-sh	
response regulator		mtrA	Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	DNA-binding response regulator mtrA			gs-sh	gs-sh	gs-sh	
thymidylate kinase	2.7.4.9	tmk	thymidylate kinase (EC 2.7.4.9)	2.7.4.9	CDS	Thymidylate kinase	2.7.4.9		base_ec	base_ec	base_ec	
adenosylhomocysteinase	3.3.1.1	ahcY	adenosylhomocysteinase (EC 3.3.1.1)	3.3.1.1	CDS	Adenosylhomocysteinase	3.3.1.1		base_tigr	base_ec	base_ec	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
rubredoxin		rubA	Rubredoxin		CDS	Rubredoxin			lit-s	lit-s	base_lit-s	
rubredoxin-2		alkG	Rubredoxin		CDS	Rubredoxin			gs-sh	gs-sh	base_lit-s	
fatty acid desaturase family protein			alkane 1-monooxygenase (EC 1.14.15.3)	1.14.15.3	CDS	Alkane-1 monooxygenase	1.14.15.3		0	0	base_ec	
amino acid permease family protein			amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3)		CDS	Amino acid permease			0	lit-s	0	
mannose-6-phosphate isomerase, class I	5.3.1.8	manA	mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8)	5.3.1.8	CDS	Mannose-6-phosphate isomerase	5.3.1.8		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	putative secreted protein			lit-s	base_one HP	base_one HP	
putative tobH			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
phosphoglucomutase/phosphomannomutase, C-terminal domain protein			phosphomannomutase	5.4.2.8	CDS	Phosphomannomutase	5.4.2.8		0	0	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF3499).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
possibl zinc metallo-peptidase family protein			Possibl zinc metallo-peptidase.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
transcription factor WhiB family protein			transcription factor WhiB		CDS	Sporulation regulatory protein WhiB			lit-s	0	0	
FO 2-phospho-L-lactate transferase	2.7.8.-	cofD	LPPG:FO 2-phospho-L-lactate transferase (EC 2.7.8.28)	2.7.8.28	CDS	"Lactyl (2) diphospho-(5')guanosine:7,8-didemethyl-8-hydroxy-5-deazariboflavin 2-phospho-L-lactate transferase"			base_tigr	0	0	
gamma-glutamyl ligase	6.3.2.-	cofE	coenzyme F420-0 gamma-glutamyl ligase	6.3.2.31, 6.3.2.34,6.3.2.31	CDS	Coenzyme F420-0:L-glutamate ligase @ Coenzyme F420-1:L-glutamate ligase / domain of unknown function			gs-sh	0	0	
eco57I restriction-modification methylase family protein			Adenine-specific DNA methylase		CDS	probable DNA methylase			0	0	orth	
bacterial transferase hexapeptide family protein			Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)	2.7.7.13	CDS	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase			0	0	0	
dTDP-Rha:alpha-D-GlcNAc-pyrophosphate polyprenol, alpha-3-L-rhamnosyltransferase	2.4.-.-	wbbL	Predicted glycosyltransferases		CDS	"dTDP-Rha:A-D-GlcNAc-diphosphoryl polyprenol, A-3-L-rhamnosyl transferase WbbL"			gs-sh	0	0	
dTDP-4-dehydrorhamnose reductase	1.1.1.133	rfbD	dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133)	1.1.1.133	CDS	dTDP-4-dehydrorhamnose reductase	1.1.1.133		base_tigr	base_lit-s	base_ec	
cell envelope-related function transcriptional attenuator common domain protein			transcriptional attenuator, LytR family		CDS	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"			base_tigr	map	pfam-sh	
AMP-binding enzyme family protein			TIGR03089 family protein		CDS	FIG00996117: hypothetical protein			0	0	lit-s	
conserved hypothetical protein			Protein of unknown function (DUF1490).		CDS	FIG00821109: hypothetical protein			base_one HP	base_one HP	lit-s	
cation efflux family protein			Predicted Co/Zn/Cd cation transporters		CDS	Possible membrane protein			0	0	0	
copper-translocating P-type ATPase	3.6.3.4		copper-(or silver)-translocating P-type ATPase	3.6.3.-	CDS	Probable cation-transporting P-type ATPase C (Metal-transporting ATPase Mta72)	3.6.3.-		0	0	0	
coA-transferase III family protein			Predicted acyl-CoA transferases/carnitine dehydratase		CDS	L-carnitine dehydratase/bile acid-inducible protein F	2.8.3.16		0	0	0	
acyl-CoA dehydrogenase	1.3.99.3		Acyl-CoA dehydrogenases		CDS	Butyryl-CoA dehydrogenase	1.3.99.2		0	base_ec-d	0	
sulfate transporter family protein			Sulfate permease and related transporters (MFS superfamily)	4.2.1.1	CDS	Carbonic anhydrase	4.2.1.1		0	0	base_ec	
N5-carboxyaminoimidazole ribonucleotide mutase	5.4.99.18	purE	5-(carboxyamino)imidazole ribonucleotide mutase	5.4.99.18	CDS	Phosphoribosylaminoimidazole carboxylase catalytic subunit	4.1.1.21		base_ec	base_ec-d	base_ec-d	
phosphoribosylaminoimidazole carboxylase, ATPase subunit	4.1.1.21	purK	5-(carboxyamino)imidazole ribonucleotide synthase	6.3.4.18	CDS	Phosphoribosylaminoimidazole carboxylase ATPase subunit	4.1.1.21		base_tigr	base_ec	base_ec-d	
bacterial PH domain protein			Predicted membrane protein		CDS	FIG00995613: hypothetical protein			0	0	0	
gtrA-like family protein			Predicted membrane protein		CDS	FIG00821069: hypothetical protein			gs-sh	0	0	
biotin--[acetyl-CoA-carboxylase] ligase	6.3.4.15		birA, biotin-[acetyl-CoA-carboxylase] ligase region	6.3.4.15	CDS	Biotin-protein ligase	6.3.4.15		base_tigr	base_ec	base_ec	
putative propionyl-CoA carboxylase beta chain 5			Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)	6.4.1.3	CDS	Methylcrotonyl-CoA carboxylase carboxyl transferase subunit	6.4.1.4		0	0	base_ec-d	
acyl-CoA carboxylase epsilon subunit			Acyl-CoA carboxylase epsilon subunit.		CDS	FIG00820143: hypothetical protein			lit-s	0	0	
septum formation protein Maf		maf	MAF protein		CDS	Septum formation protein Maf			base_tigr	lit-s	orth	
putative thiosulfate sulfurtransferase sseA			Rhodanese-related sulfurtransferase	2.8.1.2, 2.8.1.1	CDS	"Thiosulfate sulfurtransferase, rhodanese"	2.8.1.1		gs-sh	tf_idf	base_ec-d	
fe-S metabolism associated domain protein			SufE protein probably involved in Fe-S center assembly		CDS	Sulfur acceptor protein SufE for iron-sulfur cluster assembly			0	0	pfam-sh	
carbamoyl-phosphate synthase L chain, ATP binding domain protein			biotin carboxyl carrier protein/biotin carboxylase (EC 6.3.4.14)	6.3.4.14	CDS	Biotin carboxylase of acetyl-CoA carboxylase / Biotin carboxyl carrier protein of acetyl-CoA carboxylase	6.3.4.14		0	0	base_ec	
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily protein			RNA polymerase sigma-70 factor, sigma-B/F/G subfamily		CDS	RNA polymerase sigma factor SigB			lit-s	0	0	
histidine kinase-like ATPase domain protein			Anti-sigma regulatory factor (Ser/Thr protein kinase)		CDS	Serine-protein kinase RsbW	2.7.11.1		0	0	gs-sh	
putative usfY protein			hypothetical protein		CDS	Putative uncharacterized protein usfY			base_one HP	lit-s	base_one HP	
putative membrane protein			hypothetical protein		CDS	Possible transmembrane protein			base_one HP	0	base_one HP	
L-lysine 6-transaminase	2.6.1.36	lat	L-lysine 6-transaminase precursor (EC 2.6.1.36)	2.6.1.36	CDS	Probable L-lysine-epsilon aminotransferase (L-lysine aminotransferase) (Lysine 6-aminotransferase)	2.6.1.36		base_tigr	base_ec	base_ec	
asnC family protein			transcriptional regulator, AsnC family		CDS	"Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system"			gs-sh	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Uncharacterized protein Rv3292/MT3391			base_one HP	base_one HP	0	
aldehyde dehydrogenase family protein			delta-1-piperideine-6-carboxylate dehydrogenase	1.2.1.3,1.2.1.-	CDS	Aldehyde dehydrogenase B	1.2.1.22		0	tf_idf	0	
conserved hypothetical protein			Domain of unknown function (DUF4143).		CDS	Possible AAA family ATPase			base_one HP	base_one HP	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
DEAD/DEAH box helicase family protein			ATP dependent helicase, Lhr family	3.6.4.-	CDS	Probable ATP-dependent helicase lhr	3.6.1.-		0	0	0	
formamidopyrimidine-DNA glycosylase H2TH domain protein			Formamidopyrimidine-DNA glycosylase	4.2.99.18, 3.2.2.-	CDS	Formamidopyrimidine-DNA glycosylase	3.2.2.23		0	0	base_lit-s	
prolyl oligopeptidase family protein			Poly(3-hydroxybutyrate) depolymerase		CDS	POSSIBLE ESTERASE LIPOPROTEIN LPQC			0	0	gs-sh	
sulfatase family protein			Arylsulfatase A and related enzymes	3.1.6.1	CDS	Arylsulfatase	3.1.6.1		0	0	base_ec	
RNA pseudouridylate synthase family protein			Pseudouridylate synthases, 23S RNA-specific	5.4.99.28, 5.4.99.29	CDS	RNA pseudouridylate synthase family protein			0	base_lit-s	0	
phosphate transport system regulatory protein PhoU		phoU	phosphate transport system regulatory protein PhoU		CDS	Phosphate transport system regulatory protein PhoU			base_lit-s	lit-s	lit-s	
FAD binding domain protein			Glycerol-3-phosphate dehydrogenase	1.1.5.3	CDS	Glycerol-3-phosphate dehydrogenase	1.1.5.3		0	0	base_lit-s	
NAD	1.6.5.2	lpdA	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes	1.8.1.4	CDS	Dihydrolipoamide dehydrogenase	1.8.1.4		base_ec-d	base_ec-d	base_ec	
AIG2-like family protein			AIG2-like family.		CDS	FIG01122412: hypothetical protein			lit-s	0	0	
amidohydrolase family protein			amidohydrolase	3.5.1.-	CDS	Possible N-acyl-L-amino acid amidohydrolase amiA1	3.5.1.-		base_tigr	map	orth	
amidohydrolase family protein			amidohydrolase		CDS	"Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A"			base_tigr	0	0	
purine nucleotide phosphorylase	2.4.2.1		purine nucleotide phosphorylase	2.4.2.1	CDS	Purine nucleoside phosphorylase	2.4.2.1		base_lit-s	base_ec	base_ec	
phosphoglucomutase/phosphomannomutase, C-terminal domain protein			Phosphomannomutase		CDS	Phosphomannomutase	5.4.2.8		0	0	base_lit-s	
uracil phosphoribosyltransferase	2.4.2.9	upp	uracil phosphoribosyltransferase (EC 2.4.2.9)	2.4.2.9	CDS	uracil phosphoribosyltransferase			base_tigr	base_lit-s	lit-s	
phosphoesterase family protein			Phosphoesterase family.	3.1.3.2	CDS	Possible acid phosphatase	3.1.3.2		lit-s	map	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG026501: hypothetical protein			lit-s	base_one HP	base_one HP	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	"Hydrolase, alpha/beta hydrolase fold family"			0	lit-s	0	
hypothetical protein			hypothetical protein		CDS	FIG00820553: hypothetical protein			base_lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	SECRETED PROTEIN ANTIGEN			base_lit-s	base_one HP	base_one HP	
adenosine deaminase	3.5.4.4	add	adenosine deaminase (EC 3.5.4.4)	3.5.4.4	CDS	Adenosine deaminase	3.5.4.4		base_tigr	base_ec	base_ec	
pyrimidine-nucleoside phosphorylase family protein	2.4.2.2	pdp	thymidine phosphorylase (EC 2.4.2.4)	2.4.2.4	CDS	Thymidine phosphorylase	2.4.2.4		base_tigr	base_ec-d	base_ec	
cytidine deaminase	3.5.4.5	cdd	cytidine deaminase (EC 3.5.4.5)	3.5.4.5	CDS	Cytidine deaminase	3.5.4.5		base_ec	base_ec	base_ec	
succinate dehydrogenase, cytochrome b556 subunit		sdhC	succinate dehydrogenase subunit C	1.3.5.1	CDS	Succinate dehydrogenase cytochrome b-556 subunit			base_tigr	gs-sh	map	
succinate dehydrogenase/Fumarate reductase transmembrane subunit			succinate dehydrogenase subunit D	1.3.5.1	CDS	Succinate dehydrogenase hydrophobic membrane anchor protein			0	0	0	
succinate dehydrogenase, flavoprotein subunit		sdhA	succinate dehydrogenase subunit A	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase flavoprotein subunit	1.3.99.1		gs-sh	lit-s	base_ec-d	
succinate dehydrogenase and fumarate reductase iron-sulfur family protein			succinate dehydrogenase subunit B	1.3.99.1,1.3.5.1	CDS	Succinate dehydrogenase iron-sulfur protein	1.3.99.1		base_tigr	tf_idf	base_ec-d	
putative ribonuclease VapC39			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Toxin 1, PIN domain"			0	0	pfam-sh	
ribbon-helix-helix , copG family protein			Ribbon-helix-helix protein, copG family.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
methyltransferase domain protein			Methyltransferase domain.		CDS	Possible methyltransferase	2.1.1.-		lit-s	lit-s	lit-s	
molybdopterin converting factor, subunit 1		moaD	molybdopterin synthase subunit MoaE/molybdopterin synthase subunit MoaD	2.-,2.8.1.12, 2.8.1.12	CDS	Molybdenum cofactor biosynthesis protein MoaE			base_tigr	map	pfam-sh	
molybdenum cofactor biosynthesis protein C		moaC	molybdenum cofactor biosynthesis protein MoaC		CDS	Molybdenum cofactor biosynthesis protein MoaC			base_tigr	gs-sh	lit-s	
putative pterin-4-alpha-carbinolamine dehydratase moaB3			hypothetical protein		CDS	Pterin-4-alpha-carbinolamine dehydratase	4.2.1.96		base_one HP	0	base_one HP	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
			RNA polymerase sigma factor, sigma-70 family		CDS				base_one miss	base_both miss	base_one miss	
carboxymuconolactone decarboxylase family protein			Uncharacterized conserved protein		CDS	Mobile element protein			0	0	0	
aminotransferase class-III family protein			Adenosylmethionine-8-amino-7-oxononanoate aminotransferase		CDS	Omega-amino acid--pyruvate aminotransferase	2.6.1.18		0	0	0	
hypothetical protein						FIG00822519: hypothetical protein			base_one HP	base_one HP	base_one miss	
D-alanyl-D-alanine carboxypeptidase family protein			D-alanyl-D-alanine carboxypeptidase	3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		lit-s	lit-s	base_lit-s	
MFS transporter, sugar porter family protein			MFS transporter, sugar porter (SP) family		CDS	Sugar-transport integral membrane proteinSugI			base_tigr	0	0	
N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25	nagA	N-acetylglucosamine 6-phosphate deacetylase (EC 3.5.1.25)	3.5.1.25	CDS	N-acetylglucosamine-6-phosphate deacetylase	3.5.1.25		base_tigr	base_lit-s	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	Hydroxyproline-rich glycoprotein DZ-HRGP precursor			base_one HP	base_one HP	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
merR regulatory family protein			Predicted transcriptional regulators		CDS	Mercuric resistance operon regulatory protein			gs-sh	0	0	
inner membrane protein YhjD		yhjD	ribonuclease, putative		CDS	putative membrane protein			base_tigr	0	0	
tryptophan--tRNA ligase	6.1.1.2	trpS	tryptophanyl-tRNA synthetase (EC 6.1.1.2)	6.1.1.2	CDS	Tryptophanyl-tRNA synthetase	6.1.1.2		base_tigr	base_ec	base_ec	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Alpha/beta hydrolase family			0	tf_idf	0	
isocitrate dehydrogenase, NADP-dependent	1.1.1.42		isocitrate dehydrogenase (NADP) (EC 1.1.1.42)	1.1.1.42	CDS	Isocitrate dehydrogenase [NADP]	1.1.1.42		base_tigr	base_ec	base_ec	
putative nADP-dependent isocitrate dehydrogenase			hypothetical protein		CDS	FIG00822939: hypothetical protein			base_one HP	0	base_one HP	
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein			O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	2.5.1.49	CDS	O-acetylhomoserine sulfhydrylase / O-succinylhomoserine sulfhydrylase	2.5.1.49, 2.5.1.48		base_tigr	0	base_ec-d	
homoserine O-acetyltransferase	2.3.1.31	metX	homoserine O-acetyltransferase (EC 2.3.1.31)	2.3.1.31	CDS	Homoserine O-acetyltransferase	2.3.1.31		base_tigr	base_ec	base_ec	
ubiE/COQ5 methyltransferase family protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	Methyltransferase	2.1.1.-		gs-sh	gs-sh	map	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
hypothetical protein			hypothetical protein		CDS	PE_PGRS family protein			base_lit-s	base_one HP	base_one HP	
PE family protein			hypothetical protein		CDS	PE-PGRS FAMILY PROTEIN			base_one HP	0	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3017).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
transposase family protein						Mobile element protein			base_one miss	0	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
putative transposase						"ISMsm4, transposase"			base_one miss	0	base_one miss	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
berberine and berberine like family protein			Berberine and berberine like.		CDS	probable oxidoreductase			lit-s	0	0	
FAD binding domain protein			FAD/FMN-containing dehydrogenases		CDS	probable oxidoreductase			0	0	0	
putative oxidoreductase			hypothetical protein		CDS	POSSIBLE OXIDOREDUCTASE			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF732).		CDS	Possible lipoprotein LprJ			base_one HP	base_one HP	0	
conserved hypothetical protein			Protein of unknown function (DUF3017).		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
bifunctional protein FolD	3.5.4.9	folD	5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase	1.5.1.5, 3.5.4.9	CDS	Methylenetetrahydrofolate dehydrogenase (NADP+) / Methenyltetrahydrofolate cyclohydrolase	1.5.1.5, 3.5.4.9		base_ec-d	base_ec-d	base_ec	
antitoxin RelJ		relJ	prevent-host-death family protein		CDS	YefM protein (antitoxin to YoeB)			0	0	0	
addiction module toxin, Txe/YoeB family			toxin-antitoxin system, toxin component, Txe/YoeB family		CDS	YoeB toxin protein			base_tigr	0	0	
dihydrouridine synthase family protein			NADH:flavin oxidoreductases, Old Yellow Enzyme family		CDS	"NADH:flavin oxidoreductases, Old Yellow Enzyme family"			0	0	lit-s	
pentapeptide repeat family protein			Uncharacterized low-complexity proteins		CDS	pentapeptide repeat family protein			0	base_lit-s	0	
FHA domain protein			FOG: FHA domain		CDS	ABC transporter ATP-binding protein			lit-s	0	0	
elongation factor Tu GTP binding domain protein			Predicted GTPase		CDS	Putative ATP/GTP-binding protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF742).		CDS	FIG00995222: hypothetical protein			base_one HP	base_one HP	lit-s	
roadblock/LC7 domain protein			Uncharacterized distant relative of homeotic protein bithoraxoid		CDS	FIG01121836: hypothetical protein			0	0	0	
histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein			Signal transduction histidine kinase		CDS	putative sensor-like histidine kinase			0	0	0	
spoU rRNA Methylase family protein			Predicted rRNA methylase (SpoU class)	2.1.1.207	CDS	tRNA (cytidine(34)-2'-O)-methyltransferase ## TrmL	2.1.1.207		gs-sh	gs-sh	base_ec	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
nitroreductase family protein			Nitroreductase		CDS	putative oxidoreductase			lit-s	orth	orth	
pyridoxamine 5'-phosphate oxidase family protein			PPOX class probable F420-dependent enzyme, Rv3369 family		CDS	FIG00820233: hypothetical protein			0	0	0	
DNA polymerase III, alpha subunit	2.7.7.7	dnaE	error-prone DNA polymerase, DnaE-like (EC 2.7.7.7)	2.7.7.7	CDS	Error-prone repair homolog of DNA polymerase III alpha subunit	2.7.7.7		base_tigr	base_ec	base_ec	
putative diacyglycerol O-acyltransferase tgs1			acyltransferase, WS/DGAT/MGAT		CDS	hypothetical protein			0	base_one HP	base_one HP	
trehalose-phosphatase	3.1.3.12	otsB	trehalose 6-phosphatase (EC 3.1.3.12)	3.1.3.12	CDS	Trehalose-6-phosphate phosphatase	3.1.3.12		base_ec	base_ec	base_ec	
enoyl-CoA hydratase/isomerase family protein			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	PROBABLE ENOYL-COA HYDRATASE ECHA18 (ENOYL HYDRASE) (UNSATURATED ACYL-COA HYDRATASE) (CROTONASE)( EC:4.2.1.17 )			0	0	0	
putative enoyl-CoA hydratase echA18_1			hypothetical protein	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		base_one HP	0	base_one HP	
amidase family protein			Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases	3.5.1.4	CDS	Glutamyl-tRNA(Gln) amidotransferase subunit A-like protein			0	0	gs-sh	
HAD hydrolase, IA, variant 1 family protein			haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E		CDS	hydrolase			0	0	0	
prenyltransferase-like family protein			Squalene cyclase		CDS	Ent-copalyl diphosphate synthase			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS				lit-s	base_one HP	base_one HP	
1-deoxy-D-xylulose-5-phosphate synthase	2.2.1.7	dxs	Deoxyxylulose-5-phosphate synthase	2.2.1.7	CDS	1-deoxy-D-xylulose 5-phosphate synthase	2.2.1.7		base_ec	base_ec	base_ec	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2	ispH	4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)	1.17.1.2	CDS	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	1.17.1.2		base_tigr	base_lit-s	base_ec	
putative polyprenyl synthatase			Geranylgeranyl pyrophosphate synthase	2.5.1.10, 2.5.1.29, 2.5.1.1	CDS	POSSIBLE POLYPRENYL SYNTHETASE IDSB (POLYPRENYL TRANSFERASE) (POLYPRENYL DIPHOSPHATE SYNTHASE)			0	0	0	
putative ribonuclease VapC46			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00822190: hypothetical protein			0	0	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
antitoxin VapB46		vapB46	prevent-host-death family protein		CDS	FIG00821458: hypothetical protein			0	0	0	
conserved hypothetical protein			transposase, IS5 family		CDS	Mobile element protein			base_one HP	base_one HP	0	
transposase DDE domain protein			Transposase and inactivated derivatives, IS5 family		CDS	PROBABLE TRANSPOSASE			0	0	0	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
maoC like domain protein			Acyl dehydratase		CDS	Enoyl-CoA hydratase			gs-sh	gs-sh	map	
histidine phosphatase super family protein			Fructose-2,6-bisphosphatase		CDS	Lipoprotein LpqD			0	0	0	
fatty acyl-CoA reductase domain protein	1.2.1.n2	acr1	Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes		CDS	"Oxidoreductase, short-chain dehydrogenase/reductase family"			gs-sh	0	0	
cyclopropane mycolic acid synthase 1	2.1.1.79	cmaA1	Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	Cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79		base_ec	base_ec	base_ec	
inosine-uridine preferring nucleoside hydrolase family protein			Inosine-uridine nucleoside N-ribohydrolase	3.2.2.1	CDS	Inosine-uridine preferring nucleoside hydrolase	3.2.2.1		map	lit-s	base_ec	
impB/mucB/samB family protein			Nucleotidyltransferase/DNA polymerase involved in DNA repair		CDS	DNA polymerase IV-like protein ImuB			gs-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821108: hypothetical protein			lit-s	base_one HP	base_one HP	
putative membrane protein			hypothetical protein		CDS	PROBABLE MEMBRANE PROTEIN			base_one HP	lit-s	base_one HP	
GMP synthase [glutamine-hydrolyzing]	6.3.5.2	guaA	GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2)	6.3.5.2	CDS	bifunctional GMP synthase/glutamine amidotransferase protein			base_ec	gs-sh	map	
squalene synthase HpnD	2.5.1.21	hpnD	farnesyl-diphosphate farnesyltransferase	2.5.1.32,2.5.1.21	CDS	Phytoene synthase	2.5.1.32		base_tigr	base_ec-d	base_ec-d	
putative polyprenyl synthatase			Geranylgeranyl pyrophosphate synthase	2.5.1.1, 2.5.1.10, 2.5.1.29	CDS	polyprenyl diphosphate synthase			0	0	tf_idf	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	O-Methyltransferase involved in polyketide biosynthesis			base_tigr	0	0	
HAD hydrolase, IA, variant 3 family protein			haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/beta-phosphoglucomutase family hydrolase		CDS	"Hydrolase, haloacid dehalogenase-like family"			0	0	0	
glycosyl hydrolase family 65 central catalytic domain protein			Trehalose and maltose hydrolases (possible phosphorylases)		CDS	Maltose phosphorylase / Trehalose phosphorylase	2.4.1.8, 2.4.1.64		0	0	0	
conserved hypothetical protein			hypothetical protein		CDS				lit-s	base_one HP	base_one HP	
degT/DnrJ/EryC1/StrS aminotransferase family protein			Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis		CDS	DegT/DnrJ/EryC1 family protein			gs-sh	gs-sh	gs-sh	
FAD-NAD(P)-binding family protein			Uncharacterized protein conserved in bacteria		CDS	"Zn-dependent hydrolases, including glyoxylases"			0	0	0	
formyl transferase family protein			Methionyl-tRNA formyltransferase		CDS	Methionyl-tRNA formyltransferase			0	0	base_lit-s	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	"Transcriptional regulator, TetR family"			gs-sh	gs-sh	lit-s	
alpha-ketoglutarate-dependent taurine dioxygenase	1.14.11.17		Probable taurine catabolism dioxygenase	1.14.11.17	CDS	Alpha-ketoglutarate-dependent taurine dioxygenase	1.14.11.17		base_ec	base_ec	base_ec	
antitoxin VapB47		vapB47	hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
putative ribonuclease VapC47			Predicted nucleic acid-binding protein, contains PIN domain		CDS	FIG00822687: hypothetical protein			0	0	0	
cholesterol oxidase	1.1.3.6	choD	Choline dehydrogenase and related flavoproteins	1.1.3.6	CDS	Cholesterol oxidase	1.1.3.6		base_ec	base_ec	base_ec	
conserved hypothetical protein			IMP dehydrogenase family protein	1.1.1.205	CDS	Inosine-5'-monophosphate dehydrogenase	1.1.1.205		base_one HP	base_one HP	base_ec	
inosine-5'-monophosphate dehydrogenase	1.1.1.205	guaB	inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)	1.1.1.205	CDS	Inosine-5'-monophosphate dehydrogenase	1.1.1.205		base_tigr	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00997706: hypothetical protein			lit-s	base_one HP	base_one HP	
RNA polymerase sigma factor, sigma-70 family protein			RNA polymerase sigma factor, sigma-70 family		CDS	RNA polymerase sigma-70 factor			base_tigr	tf_idf	tf_idf	
conserved hypothetical protein			hypothetical protein		CDS	FIG00996157: hypothetical protein			lit-s	base_one HP	base_one HP	
transcription factor WhiB family protein			Transcription factor WhiB.		CDS	Sporulation regulatory protein WhiD			lit-s	0	0	
chaperonin GroL		groL	chaperonin GroL		CDS	Heat shock protein 60 family chaperone GroEL			base_lit-s	0	0	
10 kDa chaperonin		groS	Co-chaperonin GroES (HSP10)		CDS	Heat shock protein 60 family co-chaperone GroES			gs-sh	0	0	
metallohydrolase, glycoprotease/Kae1 family protein			O-sialoglycoprotein endopeptidase (EC 3.4.24.57)	3.4.24.57	CDS	"TsaD/Kae1/Qri7 protein, required for threonylcarbamoyladenosine t(6)A37 formation in tRNA"			0	0	gs-sh	
ribosomal-protein-alanine acetyltransferase	2.3.1.128	rimI	ribosomal-protein-alanine acetyltransferase	2.3.1.128	CDS	Ribosomal-protein-S18p-alanine acetyltransferase	2.3.1.-		base_lit-s	gs-sh	map	
glycoprotease family protein			universal bacterial protein YeaZ		CDS	"Inactive homolog of metal-dependent proteases, putative molecular chaperone"			0	0	0	
conserved hypothetical protein			ATPase, YjeE family		CDS	"ATPase YjeE, predicted to have essential role in cell wall biosynthesis"			base_one HP	base_one HP	0	
alanine racemase	5.1.1.1	alr	alanine racemase (EC 5.1.1.1)	5.1.1.1	CDS	Alanine racemase	5.1.1.1		base_tigr	base_ec	base_ec	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
putative predicted protein						hypothetical protein			base_one miss	base_one HP	base_one HP	
			PPE family.		CDS				base_one miss	base_both miss	base_one miss	
istB-like ATP binding family protein			DNA replication protein		CDS	Mobile element protein			gs-sh	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
putative predicted protein			hypothetical protein		CDS	Mobile element protein			base_one HP	0	base_one HP	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
			PPE family.		CDS				base_one miss	base_both miss	base_one miss	
putative predicted protein						FIG00822099: hypothetical protein			base_one miss	lit-s	base_one miss	
transposase of ISCARN54, ORFA, IS3 family IS3 group			hypothetical protein		CDS	FIG00825126: hypothetical protein			base_one HP	0	base_one HP	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Transposase			0	orth	0	
glutamate decarboxylase	4.1.1.15		glutamate decarboxylase (EC 4.1.1.15)	4.1.1.15	CDS	GadB( EC:4.1.1.15 )			base_tigr	0	0	
yjeF-related family protein			yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region		CDS	NAD(P)HX epimerase / NAD(P)HX dehydratase			gs-sh	0	0	
putative membrane protein			hypothetical protein		CDS	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	orth	base_one HP	
putative cONSERVED TRANSMEMBRANE PROTEIN			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	lit-s	base_one HP	
						FIG00820835: hypothetical protein			base_both miss	base_one miss	base_one miss	
glutamine-fructose-6-phosphate transaminase	2.6.1.16	glmS	glutamine--fructose-6-phosphate transaminase	2.6.1.16	CDS	Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]	2.6.1.16		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Protein of unknown function (DUF2510).		CDS	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	0	
dienelactone hydrolase family protein			Dienelactone hydrolase and related enzymes		CDS	FIG00996653: hypothetical protein			lit-s	0	0	
putative conserved alanine and proline rich protein			hypothetical protein		CDS	Conserved alanine and proline rich protein			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820542: hypothetical protein			lit-s	base_one HP	base_one HP	
phosphoglucosamine mutase	5.4.2.10	glmM	phosphoglucosamine mutase (EC 5.4.2.10)	5.4.2.10	CDS	Phosphoglucosamine mutase	5.4.2.10		base_tigr	base_ec	base_ec	
30S ribosomal protein S9		rpsI	SSU ribosomal protein S9P		CDS	SSU ribosomal protein S9p (S16e)			gs-sh	0	0	
ribosomal protein L13		rplM	LSU ribosomal protein L13P		CDS	LSU ribosomal protein L13p (L13Ae)			base_tigr	0	0	
WXG100 type VII secretion target family protein			WXG100 family type VII secretion target		CDS	probable secreted protein			base_tigr	0	0	
s of 100 residues with WXG family protein			Uncharacterized protein conserved in bacteria		CDS	ESAT-6 like protein EsxU			0	0	0	
conserved hypothetical protein			type VII secretion-associated protein, Rv3446c family, C-terminal domain		CDS	Type VII secretion-associated protein			base_one HP	base_one HP	0	
type VII secretion protein EccCb		eccCb	type VII secretion protein EccCa/type VII secretion protein EccCb		CDS	FtsK/SpoIIIE family protein			0	0	gs-sh	
hypothetical protein						FIG00824274: hypothetical protein			base_one HP	base_one HP	base_one miss	
type VII secretion integral membrane protein EccD		eccD	type VII secretion integral membrane protein EccD		CDS	PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN			base_lit-s	0	0	
type VII secretion protein EccB		eccB	type VII secretion protein EccB, Actinobacterial		CDS	PROBABLE CONSERVED MEMBRANE PROTEIN			base_tigr	0	0	
type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	subtilase family protein			base_lit-s	0	0	
cutinase family protein			Cutinase.	3.1.1.74	CDS	"serine esterase, cutinase family"			lit-s	0	0	
cutinase family protein			Cutinase.	3.1.1.-	CDS	"serine esterase, cutinase family"			lit-s	0	0	
putative membrane protein			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	0	base_one HP	
tRNA pseudouridine synthase family protein			pseudouridylate synthase I	5.4.99.12	CDS	tRNA pseudouridine synthase A	4.2.1.70		gs-sh	gs-sh	base_ec-d	
putative membrane protein			Purine-cytosine permease and related proteins		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			0	orth	0	
ribosomal protein L17		rplQ	LSU ribosomal protein L17P		CDS	LSU ribosomal protein L17p			base_tigr	orth	lit-s	
DNA-directed RNA polymerase, alpha subunit	2.7.7.6	rpoA	DNA-directed RNA polymerase subunit alpha (EC 2.7.7.6)	2.7.7.6	CDS	DNA-directed RNA polymerase alpha subunit	2.7.7.6		base_tigr	base_ec	base_ec	
ribosomal protein S4		rpsD	SSU ribosomal protein S4P		CDS	SSU ribosomal protein S4p (S9e)			base_tigr	0	0	
30S ribosomal protein S11		rpsK	SSU ribosomal protein S11P		CDS	SSU ribosomal protein S11p (S14e)			base_tigr	0	0	
30S ribosomal protein S13		rpsM	SSU ribosomal protein S13P		CDS	SSU ribosomal protein S13p (S18e)			base_tigr	0	0	
translation initiation factor IF-1		infA	bacterial translation initiation factor 1 (bIF-1)		CDS	Translation initiation factor 1			base_tigr	gs-sh	map	
putative F420-dependent oxidoreductase, MSMEG_4141 family protein			probable F420-dependent oxidoreductase, MSMEG_4141 family		CDS	"Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases"			base_tigr	0	0	
dTDP-glucose 4,6-dehydratase	4.2.1.46	rfbB	dTDP-glucose 4,6-dehydratase (EC 4.2.1.46)	4.2.1.46	CDS	"dTDP-glucose 4,6-dehydratase"	4.2.1.46		base_tigr	base_ec	base_ec	
dTDP-4-dehydrorhamnose 3,5-epimerase	5.1.3.13	rfbC	dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13)	5.1.3.13	CDS	"dTDP-4-dehydrorhamnose 3,5-epimerase"	5.1.3.13		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Domain of unknown function (DUF222).		CDS	Partial REP13E12 repeat protein			base_one HP	base_one HP	0	
polysaccharide biosynthesis family protein			Nucleoside-diphosphate-sugar epimerases	4.2.1.46	CDS	UDP-glucose 4-epimerase	5.1.3.2		0	0	base_ec-d	
HMGL-like family protein			Isopropylmalate/homocitrate/citramalate synthases	4.1.3.39	CDS	4-hydroxy-2-oxovalerate aldolase	4.1.3.39		0	0	base_ec	
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]	2.2.1.6	CDS	Acetohydroxy acid synthase			0	0	0	
cupin domain protein			Mannose-6-phosphate isomerase		CDS	Mannose-6-phosphate isomerase			0	0	base_lit-s	
snoaL-like domain protein			SnoaL-like domain.		CDS	FIG00820398: hypothetical protein			lit-s	0	0	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Peroxidase BpoA			0	0	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
integrase core domain protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
sugar (and other) transporter family protein			Arabinose efflux permease		CDS	dicarboxylic acid transporter PcaT			0	0	0	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
patatin-related domain protein			patatin-related protein		CDS	POSSIBLE TRANSMEMBRANE PROTEIN			base_tigr	0	0	
putative diacyglycerol O-acyltransferase tgs2			acyltransferase, WS/DGAT/MGAT		CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2910).		CDS	PROBABLE INTEGRAL MEMBRANE PROTEIN			base_one HP	base_one HP	0	
conserved hypothetical protein			hypothetical protein		CDS	PROBABLE CONSERVED MEMBRANE PROTEIN			lit-s	base_one HP	base_one HP	
lppP/LprE lipofamily protein			LppP/LprE lipoprotein.		CDS	Lipoprotein LppP/LprE			gs-sh	map	lit-s	
cell envelope-related function transcriptional attenuator common domain protein			transcriptional attenuator, LytR family		CDS	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"			base_tigr	map	pfam-sh	
polysaccharide biosynthesis family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase			0	0	0	
alpha/beta hydrolase fold family protein			Esterase/lipase		CDS	putative esterase			0	0	0	
doxX-like family protein			Predicted membrane protein		CDS	hypothetical protein			gs-sh	base_one HP	base_one HP	
transcriptional regulator PadR-like family protein			Predicted transcriptional regulators		CDS	"Transcriptional regulator, PadR family"			tf_idf	pfam-sh	tf_idf	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820754: hypothetical protein			lit-s	base_one HP	base_one HP	
trehalose-phosphate synthase	2.4.1.-	otsA	trehalose 6-phosphate synthase (EC 2.4.1.15)	2.4.1.15	CDS	"Alpha,alpha-trehalose-phosphate synthase [UDP-forming]"	2.4.1.15		gs-sh	gs-sh	base_ec	
macrophage killing with similarity to conjugation family protein			Macrophage killing protein with similarity to conjugation protein.		CDS	MCE-associated transmembrane protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820113: hypothetical protein			lit-s	base_one HP	base_one HP	
putative mCE associated alanine and valine rich protein			hypothetical protein		CDS	MCE-associated alanine and valine rich protein			base_one HP	0	base_one HP	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1F			gs-sh	0	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family lipoprotein LprK (MCE-family lipoprotein Mce1e)			gs-sh	0	0	
conserved hypothetical protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1D			base_one HP	base_one HP	0	
conserved hypothetical protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1C			base_one HP	base_one HP	0	
mce related family protein			virulence factor Mce family protein		CDS	MCE-family protein Mce1B			gs-sh	0	0	
mce related family protein			ABC-type transport system involved in resistance to organic solvents, periplasmic component		CDS	MCE-family protein Mce1A			gs-sh	0	0	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1B			0	0	0	
permease family protein			ABC-type transport system involved in resistance to organic solvents, permease component		CDS	Conserved hypothetical integral membrane protein YrbE1A			0	0	0	
short chain dehydrogenase			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	Probable short-chain type dehydrogenase/reductase	1.-.-.-		0	0	0	
conserved hypothetical protein			Ferredoxin		CDS	Ferredoxin			base_one HP	base_one HP	base_lit-s	
acyl-CoA dehydrogenase, N-terminal domain protein			Acyl-CoA dehydrogenases		CDS	FadE30			0	0	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	"Acyl-CoA dehydrogenase, short-chain specific"	1.3.99.2		0	0	0	
long-chain-fatty-acid--CoA ligase FadD17	6.2.1.3	fadD17	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		gs-sh	base_ec	map	
PE family protein			PE family.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
PE family protein			PE family.		CDS	PE-PGRS virulence associated protein			lit-s	0	0	
thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein			Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]	2.2.1.6	CDS	COG0028: Thiamine pyrophosphate-requiring enzymes			0	0	0	
amidohydrolase family protein			Predicted metal-dependent hydrolase of the TIM-barrel fold		CDS	PROBABLE ANTIBIOTIC-RESISTANCE PROTEIN			0	0	0	
hypothetical protein			hypothetical protein		CDS	hypothetical protein			base_lit-s	base_lit-s	base_lit-s	
PE family protein			PE family.		CDS	PE-PGRS family protein			lit-s	0	0	
hypothetical protein			hypothetical protein		CDS	Merozoite surface protein 2			base_lit-s	base_one HP	base_one HP	
hypothetical protein						"peptidase C14, caspase catalytic subunit p20"			base_one HP	base_one HP	base_one miss	
hypothetical protein						PE-PGRS virulence associated protein			base_one HP	base_one HP	base_one miss	
AMP-binding enzyme family protein						Long-chain-fatty-acid--CoA ligase	6.2.1.3		base_one miss	0	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
PE family protein						PE-PGRS FAMILY PROTEIN			base_one miss	0	base_one miss	
long-chain-fatty-acid--CoA ligase FadD19	6.2.1.3	fadD19	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		gs-sh	base_ec	map	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
enoyl-CoA hydratase EchA1		echA1	short chain enoyl-CoA hydratase (EC 4.2.1.17)	4.2.1.17	CDS	Enoyl-CoA hydratase	4.2.1.17		gs-sh	gs-sh	base_ec	
conserved hypothetical protein			Domain of unknown function (DUF4095).		CDS	FIG00821502: hypothetical protein			base_one HP	base_one HP	lit-s	
putative cytochrome P450 142			Cytochrome P450		CDS	putative cytochrome P450 hydroxylase			orth	tf_idf	tf_idf	
acetoacetate decarboxylase family protein			Acetoacetate decarboxylase (ADC).		CDS	Acetoacetate decarboxylase family protein			0	lit-s	0	
putative F420-dependent oxidoreductase, Rv3520c family protein			probable F420-dependent oxidoreductase, Rv3520c family		CDS	Coenzyme F420-dependent oxidoreductase			base_tigr	0	0	
conserved hypothetical protein			Predicted nucleic-acid-binding protein containing a Zn-ribbon		CDS	FIG00996312: hypothetical protein			base_one HP	base_one HP	0	
putative lipid transfer protein/keto acyl-CoA thiolase Ltp4			Acetyl-CoA acetyltransferase		CDS	Lipid-transfer protein			0	0	0	
putative lipid carrier protein/keto acyl-CoA thiolase Ltp3			Acetyl-CoA acetyltransferase	2.3.1.9	CDS	3-ketoacyl-CoA thiolase			0	0	0	
NHL repeat family protein			NHL repeat.		CDS	Serine/threonine protein kinase	2.7.11.1		lit-s	0	0	
bacterial transferase hexapeptide family protein			Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily		CDS	"carbonic anhydrase, family 3"			0	0	0	
3-ketosteroid-9-alpha-hydroxylase oxygenase subunit	1.17.1.-	kshA	Rieske [2Fe-2S] domain.		CDS	Terminal oxygenase KshA			gs-sh	gs-sh	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820011: hypothetical protein			lit-s	base_one HP	base_one HP	
putative methyltransferase			hypothetical protein		CDS	FIG00820460: hypothetical protein			base_one HP	0	base_one HP	
transposase domain protein			hypothetical protein		CDS	FIG00821812: hypothetical protein			base_one HP	0	base_one HP	
transposase domain protein						FIG00822113: hypothetical protein			base_one miss	0	base_one miss	
sulfotransferase domain protein			Sulfotransferase family.		CDS	FIG00994930: hypothetical protein			lit-s	0	0	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	short chain dehydrogenase			0	lit-s	0	
conserved hypothetical protein			Protein of unknown function (DUF1214).		CDS	FIG00994788: hypothetical protein			base_one HP	base_one HP	lit-s	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
4-hydroxy-2-oxovalerate aldolase	4.1.3.39	dmpG	4-hydroxy-2-oxovalerate aldolase	4.1.3.39	CDS	4-hydroxy-2-oxovalerate aldolase	4.1.3.39		base_lit-s	base_lit-s	base_lit-s	
acetaldehyde dehydrogenase	1.2.1.10		acetaldehyde dehydrogenase (EC 1.2.1.10)	1.2.1.10	CDS	"Acetaldehyde dehydrogenase, acetylating, in gene cluster for degradation of phenols, cresols, catechol"	1.2.1.10		base_tigr	base_ec	base_ec	
fumarylacetoacetate (FAA) hydrolase family protein			2-keto-4-pentenoate hydratase	4.2.1.80	CDS	2-keto-4-pentenoate hydratase			0	0	base_lit-s	
3-oxosteroid 1-dehydrogenase	1.3.99.4	kstD	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	1.3.99.4	CDS	3-oxosteroid 1-dehydrogenase	1.3.99.4		base_ec	base_lit-s	base_ec	
maoC like domain protein			Acyl dehydratase		CDS	Enoyl-CoA hydratase			gs-sh	gs-sh	map	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
putative exopolyphosphatase			Acetyl-CoA acetyltransferase		CDS	Lipid carrier protein IgrF			0	0	0	
maoC like domain protein			hypothetical protein		CDS	Enoyl coenzyme A hydratase IgrE			base_one HP	0	base_one HP	
conserved hypothetical protein			Predicted nucleic-acid-binding protein containing a Zn-ribbon		CDS	Conserved protein IgrD			base_one HP	base_one HP	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Probable acyl-CoA dehydrogenase FadE29; Acyl-CoA dehydrogenase IgrC	1.3.99.-		0	tf_idf	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Probable acyl-CoA dehydrogenase FadE28; Acyl-CoA dehydrogenase IgrB	1.3.99.-		0	tf_idf	0	
steroid C27-monooxygenase	1.14.13.-	cyp125	Cytochrome P450		CDS	Putative cytochrome P450 125; Putative cytochrome P450 IgrA	1.14.-.-		gs-sh	map	tf_idf	
acetyl-CoA C-acetyltransferase family protein			acetyl-CoA acetyltransferases	2.3.1.9	CDS	Probable acetyl-CoA acetyltransferase FadA5	2.3.1.9		base_tigr	map	base_ec	
deazaflavin-dependent nitroreductase	1.-.-.-	ddn	deazaflavin-dependent nitroreductase family protein		CDS	Putative uncharacterized protein BCG_3611			lit-s	0	0	
short chain dehydrogenase			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Putative uncharacterized protein (Hypothetical short-chain type dehydrogenase/reductase)			0	0	0	
short chain dehydrogenase family protein			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)		CDS	Probable short-chain type dehydrogenase/reductase	1.-.-.-		0	0	0	
enoyl-CoA hydratase/isomerase family protein			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Probable enoyl-CoA hydratase EchA20	4.2.1.17		map	orth	base_ec	
coenzyme A transferase family protein			Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit		CDS	Putative CoA-transferase subunit alpha Rv3551/MT3655	2.8.3.-		0	0	0	
putative 3-oxoadipate CoA-transferase			Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit		CDS	Putative CoA-transferase subunit beta Rv3552/MT3656	2.8.3.-		0	0	orth	
nitronate monooxygenase family protein			Dioxygenases related to 2-nitropropane dioxygenase		CDS	2-nitropropane dioxygenase	1.13.11.32		0	0	0	
2Fe-2S iron-sulfur cluster binding domain protein			Fatty acid desaturase		CDS	Possible electron transfer protein FdxB	1.-.-.-		0	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	Putative uncharacterized protein BCG_3619c			base_one HP	base_one HP	0	
acetyl-CoA C-acetyltransferase family protein			acetyl-CoA acetyltransferases	2.3.1.9	CDS	Probable acetyl-CoA acetyltransferase FadA6	2.3.1.9		base_tigr	map	base_ec	
HTH-type transcriptional repressor KstR2		kstR2	transcriptional regulator, TetR family		CDS	"Transcriptional factor in putative operon for degradation of branched-chain alkanes, nitroalkanes and may be also cyclic ketones, alkenoic acids"			0	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
short chain dehydrogenase			Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	1.1.1.100	CDS	3-oxoacyl-[acyl-carrier protein] reductase	1.1.1.100		0	0	base_ec	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	FadE30			0	0	0	
AMP-binding enzyme family protein			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II	6.2.1.-	CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		pfam-sh	0	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	"Acyl-CoA dehydrogenase, short-chain specific"	1.3.99.2		0	0	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Acyl-CoA dehydrogenase FadE32			0	tf_idf	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Acyl-CoA dehydrogenase FadE33			0	tf_idf	0	
arylamine N-acetyltransferase	2.3.1.5	nat	Arylamine N-acetyltransferase	2.3.1.5	CDS	Arylamine N-acetyltransferase	2.3.1.5		base_ec	base_ec	base_lit-s	
aminotransferase class I and II family protein			Aspartate/tyrosine/aromatic aminotransferase		CDS	Valine--pyruvate aminotransferase ## AvtA	2.6.1.66		0	0	gs-sh	
hypothetical protein						FIG00824752: hypothetical protein			base_one HP	base_one HP	base_one miss	
arylamine N-acetyltransferase nat domain protein		nat				FIG00822596: hypothetical protein			base_one miss	0	base_one miss	
flavin-dependent monooxygenase, reductase subunit	1.5.1.-	hsaB	Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family		CDS	Nitrilotriacetate monooxygenase component B	1.14.13.-		gs-sh	0	0	
iron-dependent extradiol dioxygenase	1.13.11.-	hsaC	Predicted ring-cleavage extradiol dioxygenase	1.13.11.25	CDS	"PUTATIVE BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE BPHC (23OHBP OXYGENASE) (2,3-DIHYDROXYBIPHENYL DIOXYGENASE) (2,3-DIHYDROXYBIPHENYL 1,2-DIOXYGENASE) (DHBD)( EC:1.13.11.39 )"			gs-sh	0	0	
4,5-9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase	3.7.1.8	hsaD	Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	"2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase"	3.7.1.-		gs-sh	0	0	
flavin-dependent monooxygenase, oxygenase subunit	1.14.14.-	hsaA	Acyl-CoA dehydrogenases		CDS	POSSIBLE OXIDOREDUCTASE			gs-sh	0	0	
3-ketosteroid-9-alpha-hydroxylase reductase subunit	1.17.1.-	hmp	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1		CDS	"Phenylacetate-CoA oxygenase/reductase, PaaK subunit"			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821138: hypothetical protein			lit-s	base_one HP	base_one HP	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Acyl-CoA dehydrogenase	1.3.99.-		0	lit-s	0	
HTH-type transcriptional repressor KstR		kstR	transcriptional regulator, TetR family		CDS	"Transcriptional regulator kstR (Rv3574), TetR family"			gs-sh	gs-sh	pfam-sh	
periplasmic binding s and sugar binding domain of LacI family protein			transcriptional regulator, LacI family		CDS	"Transcriptional regulator, LacI family"			pfam-sh	pfam-sh	lit-s	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
pknH-like extracellular domain protein			PknH-like extracellular domain.		CDS	Serine/threonine protein kinase	2.7.11.1		lit-s	0	0	
beta-lactamase superfamily domain protein			Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	Zn-dependent hydrolases of the beta-lactamase fold			0	0	lit-s	
citrate transporter family protein			arsenite efflux membrane protein ArsB (TC 3.A.4.1.1; TC 2.A.45.1.1)		CDS	Arsenic efflux pump protein			0	0	0	
RNA 2'-O ribose methyltransferase substrate binding family protein			rRNA methylase, putative, group 3	2.1.1.185	CDS	23S rRNA (guanosine-2'-O-) -methyltransferase rlmB	2.1.1.-		0	0	gs-sh	
cysteine--tRNA ligase	6.1.1.16	cysS	cysteinyl-tRNA synthetase (EC 6.1.1.16)	6.1.1.16	CDS	Cysteinyl-tRNA synthetase	6.1.1.16		base_tigr	base_ec	base_ec	
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	4.6.1.12	ispF	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC 4.6.1.12)	4.6.1.12	CDS	"2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase"	4.6.1.12		base_ec	base_ec	base_ec	
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	ispD	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60	CDS	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	2.7.7.60		base_lit-s	base_lit-s	base_lit-s	
carD-like/TRCF domain protein			transcriptional regulator, CarD family		CDS	CarD-like transcriptional regulator			gs-sh	map	orth	
putative lipoprotein lpqE			hypothetical protein		CDS	Lipoprotein LpqE			base_one HP	lit-s	base_one HP	
DNA repair protein RadA		radA	DNA repair protein RadA		CDS	DNA repair protein RadA			base_lit-s	base_lit-s	base_lit-s	
disA bacterial checkpoint controller linker region family protein			Predicted nucleic-acid-binding protein (contains the HHH domain)		CDS	hypothetical protein			gs-sh	base_one HP	base_one HP	
putative cONSERVED MEMBRANE PROTEIN			hypothetical protein		CDS	FIG00820636: hypothetical protein			base_one HP	0	base_one HP	
carbonic anhydrase	4.2.1.1	cynT	Carbonic anhydrase	4.2.1.1	CDS	Carbonic anhydrase	4.2.1.1		base_ec	base_ec	base_lit-s	
PE family protein			PE family.		CDS	PE-PGRS virulence associated protein			lit-s	0	0	
hhH-GPD superbase excision DNA repair family protein			A/G-specific DNA-adenine glycosylase (EC 3.2.2.-)	3.2.2.-	CDS	A/G-specific adenine glycosylase	3.2.2.-		0	0	0	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	PUTATIVE HYDROLASE			0	tf_idf	0	
antibiotic biosynthesis monooxygenase family protein			Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides		CDS	Antibiotic biosynthesis monooxygenase			0	lit-s	0	
beta-lactamase enzyme family protein			Beta-lactamase class A		CDS	Beta-lactamase	3.5.2.6		0	lit-s	0	
N-acetylmuramoyl-L-alanine amidase family protein			N-acetylmuramoyl-L-alanine amidase.		CDS	Phage endolysin			lit-s	0	0	
PE family protein			PE family.		CDS	PE_PGRS family protein			lit-s	0	0	
istB-like ATP binding family protein			ATPases with chaperone activity, ATP-binding subunit		CDS	"ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative regulator of genetic competence clcC/mecB"			gs-sh	gs-sh	gs-sh	
protein lsr2		lsr2	Lsr2.		CDS	Histone protein Lsr2			lit-s	0	0	
lysine--tRNA ligase	6.1.1.6	lysS	lysyl-tRNA synthetase, class II (EC 6.1.1.6)	6.1.1.6	CDS	Lysyl-tRNA synthetase (class II)	6.1.1.6		base_tigr	base_ec	base_ec	
pantothenate kinase, type III family protein	2.7.1.33	coaX	pantothenate kinase (EC 2.7.1.33)	2.7.1.33	CDS	"Pantothenate kinase type III, CoaX-like"	2.7.1.33		base_tigr	base_ec	base_ec	
aspartate 1-decarboxylase	4.1.1.11	panD	L-aspartate 1-decarboxylase (EC 4.1.1.11)	4.1.1.11	CDS	Aspartate 1-decarboxylase	4.1.1.11		base_tigr	base_ec	base_ec	
pantoate--beta-alanine ligase	6.3.2.1	panC	pantothenate synthetase (EC 6.3.2.1)	6.3.2.1	CDS	Pantoate--beta-alanine ligase	6.3.2.1		base_tigr	base_ec	base_ec	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	FIG173306: hypothetical protein			base_one HP	base_one HP	lit-s	
putative conserved transmembrane protein rich in alanine and arginine and proline			hypothetical protein		CDS	Possible membrane protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF3180).		CDS	FIG027937: secreted protein			base_one HP	base_one HP	0	
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	2.7.6.3	folK	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2.7.6.3	CDS	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	2.7.6.3		base_tigr	base_ec	base_lit-s	
dihydroneopterin aldolase	4.1.2.25	folB	dihydroneopterin aldolase	4.1.2.25	CDS	Dihydroneopterin aldolase	4.1.2.25		base_lit-s	base_ec	base_ec	
dihydropteroate synthase	2.5.1.15	folP	Dihydropteroate synthase (EC 2.5.1.15)	2.5.1.15	CDS	Dihydropteroate synthase	2.5.1.15		base_tigr	base_ec	base_ec	
GTP cyclohydrolase I	3.5.4.16	folE	GTP cyclohydrolase I (EC 3.5.4.16)	3.5.4.16	CDS	GTP cyclohydrolase I type 1	3.5.4.16		base_tigr	base_ec	base_ec	
ATP-dependent metallopeptidase HflB family protein	3.4.24.-	hflB	membrane protease FtsH catalytic subunit (EC 3.4.24.-)	3.4.24.-	CDS	Cell division protein FtsH	3.4.24.-		base_tigr	gs-sh	gs-sh	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
ESX-1 secretion-associated protein EspD		espD	hypothetical protein		CDS	ESX-1 secretion system protein (Rv3614c)			base_one HP	0	base_one HP	
ESX-1 secretion-associated protein EspC		espC	Protein of unknown function (DUF2580).		CDS	Highly immunodominant RD1 (Region of Difference 1)-dependent secreted antigen specific for Mycobacterium tuberculosis infection			gs-sh	0	0	
ESX-1 secretion-associated protein EspA		espA	hypothetical protein		CDS	ESX-1 secretion system protein (Rv3616c)			base_one HP	0	base_one HP	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)		CDS	Epoxide hydrolase	3.3.2.9		0	0	0	
limonene 1,2-monooxygenase	1.14.13.107	limB	Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases	1.14.13.107	CDS	"Limonene 1,2-monooxygenase"			base_ec	lit-s	map	
putative ESAT-6-like protein 6			Proteins of 100 residues with WXG.		CDS	ESAT-6-like protein EsxL			0	0	0	
putative ESAT-6-like protein 7			WXG100 family type VII secretion target		CDS	ESAT-6-like protein EsxK			0	0	0	
PPE family protein			PPE-repeat proteins		CDS	PPE family protein			pfam-sh	base_lit-s	pfam-sh	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Lipoprotein LpqG			base_one HP	base_one HP	0	
hypoxanthine phosphoribosyltransferase	2.4.2.8	hpt	hypoxanthine phosphoribosyltransferase (EC 2.4.2.8)	2.4.2.8	CDS	Hypoxanthine-guanine phosphoribosyltransferase	2.4.2.8		base_tigr	base_ec	base_ec	
tRNA(Ile)-lysidine synthetase	6.3.4.-	tilS	tRNA(Ile)-lysidine synthetase, N-terminal domain		CDS	tRNA(Ile)-lysidine synthetase			base_tigr	base_lit-s	lit-s	
hydrolase family protein			putative hydrolase/uncharacterized protein, coenzyme F420 biosynthesis associated		CDS	hypothetical protein			0	base_one HP	base_one HP	
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	3.4.16.4	dacB	D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family	3.4.21.-, 3.4.16.4	CDS	D-alanyl-D-alanine carboxypeptidase	3.4.16.4		base_tigr	base_ec	map	
inorganic pyrophosphatase	3.6.1.1	ppa	Inorganic pyrophosphatase	3.6.1.1	CDS	Inorganic pyrophosphatase	3.6.1.1		base_ec	base_ec	base_lit-s	
integral membrane TerC family protein			Uncharacterized protein conserved in bacteria		CDS	Possible membrane protein			gs-sh	0	0	
putative membrane protein			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
glycosyl transferase 2 family protein			Glycosyltransferases involved in cell wall biogenesis		CDS	Dolichol-phosphate mannosyltransferase in lipid-linked oligosaccharide synthesis cluster	2.4.1.83		0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein (DUF2304).		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	base_one HP	gs-sh	
phytanoyl-CoA dioxygenase family protein			Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin		CDS	Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin			0	0	base_lit-s	
UDP-glucose 4-epimerase			Nucleoside-diphosphate-sugar epimerases	5.1.3.2	CDS	UDP-glucose 4-epimerase	5.1.3.2		map	base_lit-s	base_ec	
putative membrane protein			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	orth	base_one HP	
sigma-70, region 4 family protein			Transposase and inactivated derivatives		CDS	putative transposase			0	0	0	
iS21 family transposase						PROBABLE TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1533			base_one miss	0	base_one miss	
iS21 family transposase			hypothetical protein		CDS	Mobile element protein			base_one HP	0	base_one HP	
istB-like ATP binding family protein			DNA replication protein		CDS	Mobile element protein			gs-sh	0	0	
transposase, Mutator family protein			Transposase and inactivated derivatives		CDS	Transposase			0	tf_idf	0	
fic/DOC family protein			Protein involved in cell division		CDS	Cell filamentation protein Fic			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821290: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821200: hypothetical protein			lit-s	base_one HP	base_one HP	
DNA polymerase III, delta' subunit	2.7.7.7	holB	DNA polymerase III, delta prime subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III delta prime subunit	2.7.7.7		base_tigr	base_ec	base_ec	
DNA topoisomerase I	5.99.1.2	topA	DNA topoisomerase I (EC 5.99.1.2)	5.99.1.2	CDS	DNA topoisomerase I	5.99.1.2		base_tigr	base_lit-s	base_ec	
HAMP domain protein			Adenylate cyclase, family 3 (some proteins contain HAMP domain)	4.6.1.1	CDS	Adenylate cyclase	4.6.1.1		pfam-sh	map	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00995018: hypothetical protein			lit-s	base_one HP	base_one HP	
putative cold shock protein A			cold-shock DNA-binding protein family		CDS	Cold shock protein CspA			0	0	0	
DEAD/DEAH box helicase family protein			helicase/secretion neighborhood putative DEAH-box helicase		CDS	ATP-dependent helicase			0	0	0	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821239: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00824171: hypothetical protein			base_one HP	base_one HP	base_one miss	
PE family protein			PE family.		CDS	PE-PGRS family protein			lit-s	0	0	
flp pilus-assembly TadE/G-like family protein			helicase/secretion neighborhood TadE-like protein		CDS	FIG00995606: hypothetical protein			pfam-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00999563: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF4244).		CDS	FIG043778: hypothetical protein			base_one HP	base_one HP	lit-s	
type II secretion system (T2SS), F family protein			Flp pilus assembly protein TadC		CDS	FIG054221: Possible conserved alanine rich membrane protein			0	0	0	
type II secretion system (T2SS), F family protein			Flp pilus assembly protein TadB		CDS	FIG016317: Probable conserved transmembrane protein			0	0	0	
type II/IV secretion system family protein			helicase/secretion neighborhood ATPase		CDS	"Flp pilus assembly protein, ATPase CpaF"			0	0	0	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			helicase/secretion neighborhood CpaE-like protein		CDS	Septum site-determining protein MinD @ possible CpaE			gs-sh	gs-sh	gs-sh	
HAD phosphoserine phosphatase-like hydrolase, IB family protein			HAD-superfamily subfamily IB hydrolase, TIGR01490		CDS	Phosphoserine phosphatase	3.1.3.3		pfam-sh	0	0	
putative heat repeat-containing PBS lyase			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
nickel import ATP-binding protein NikE	3.6.3.24	nikE	ATPase components of various ABC-type transport systems, contain duplicated ATPase		CDS	Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2)			gs-sh	gs-sh	gs-sh	
N-terminal TM domain of oligopeptide transport permease C family protein			ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)			0	0	gs-sh	
binding--dependent transport system inner membrane component family protein			ABC-type dipeptide/oligopeptide/nickel transport systems, permease components		CDS	Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)			0	0	gs-sh	
bacterial extracellular solute-binding s, 5 Middle family protein			ABC-type oligopeptide transport system, periplasmic component		CDS	"Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)"			0	0	0	
acetate--CoA ligase	6.2.1.1	acs	acetyl-coenzyme A synthetase (EC 6.2.1.1)	6.2.1.1	CDS	Acetyl-coenzyme A synthetase	6.2.1.1		base_tigr	base_ec	base_ec	
putative secreted protein			hypothetical protein		CDS	Protease			base_one HP	orth	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF1469).		CDS	FIG00820727: hypothetical protein			base_one HP	base_one HP	lit-s	
colicin V production family protein			Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain		CDS	putative serine protease			0	0	0	
alpha/beta hydrolase fold family protein			Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)	3.3.2.9	CDS	Epoxide hydrolase	3.3.2.9		0	0	base_ec	
NUDIX domain protein			ADP-ribose pyrophosphatase		CDS	Hypothetical nudix hydrolase YeaB			0	0	0	
ahpC/TSA family protein			Thiol-disulfide isomerase and thioredoxins		CDS	Possible membrane-anchored thioredoxin-like protein			gs-sh	0	0	
endonuclease III	4.2.99.18	nth	DNA-(apurinic or apyrimidinic site) lyase/endonuclease III	4.2.99.18,4.2.99.18, 3.2.2.-	CDS	Endonuclease III	4.2.99.18		base_tigr	base_ec	map	
putative membrane protein						POSSIBLE MEMBRANE PROTEIN			base_one miss	lit-s	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
putative transcriptional regulator			cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases		CDS	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases			0	0	base_lit-s	
metallo-beta-lactamase superfamily protein			Zn-dependent hydrolases, including glyoxylases		CDS	"FIG146518: Zn-dependent hydrolases, including glyoxylases"			0	0	lit-s	
endoribonuclease L-PSP family protein			Putative translation initiation inhibitor, yjgF family		CDS	FIG137598: hypothetical protein			gs-sh	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4177).		CDS	FIG011121: hypothetical protein			base_one HP	base_one HP	lit-s	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1)		CDS	Arsenical pump-driving ATPase	3.6.3.16		gs-sh	0	0	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1)		CDS	Arsenical pump-driving ATPase	3.6.3.16		gs-sh	0	0	
transcription factor WhiB family protein			Transcription factor WhiB.		CDS	WhiB-type transcription regulator			lit-s	0	0	
penicillin binding transpeptidase domain protein			Membrane carboxypeptidase (penicillin-binding protein)		CDS	Multimodular transpeptidase-transglycosylase	2.4.1.129, 3.4.-.-		0	0	0	
calcineurin-like phosphoesterase family protein			Predicted phosphohydrolases		CDS	putative secreted protein			0	0	orth	
pyridoxal-phosphate dependent enzyme family protein			Cysteine synthase	2.5.1.47	CDS	Cysteine synthase	2.5.1.47		0	0	base_lit-s	
cytochrome P450 family protein			Cytochrome P450		CDS	Probable cytochrome P450 137 cyp137	1.14.-.-		lit-s	tf_idf	orth	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821580: hypothetical protein			lit-s	base_one HP	base_one HP	
anti-anti-sigma factor family protein			anti-anti-sigma factor		CDS	Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV			base_tigr	0	0	
yqey-like family protein			Uncharacterized conserved protein		CDS	Transamidase GatB domain protein			0	0	gs-sh	
putative membrane protein			hypothetical protein		CDS	putative integral membrane protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4129).		CDS	PROBABLE CONSERVED MEMBRANE PROTEIN			base_one HP	base_one HP	0	
conserved hypothetical protein			Domain of unknown function (DUF4350).		CDS	FIG00818282: hypothetical protein			base_one HP	base_one HP	lit-s	
AAA domain family protein			MoxR-like ATPases	3.6.3.-	CDS	MoxR-like ATPase			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	base_one HP	gs-sh	
conserved hypothetical protein			Uncharacterized membrane protein		CDS	POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	0	
RDD family protein			Predicted membrane protein/domain		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			0	0	gs-sh	
glycerol kinase	2.7.1.30	glpK	glycerol kinase (EC 2.7.1.30)	2.7.1.30	CDS	Glycerol kinase	2.7.1.30		base_tigr	base_ec	base_ec	
mycobacterium tuberculosis PIN domain protein			Predicted nucleic acid-binding protein, contains PIN domain		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_tigr	map	gs-sh	
			hypothetical protein		CDS	"DNA-binding protein, CopG family"			base_one HP	base_one miss	base_one HP	
glutamate-cysteine ligase 2 family protein			hypothetical protein		CDS	FIG00820887: hypothetical protein			base_one HP	0	base_one HP	
methyltransferase domain protein			Thiopurine S-methyltransferase (TPMT).		CDS	Methyltransferase	2.1.1.-		0	lit-s	0	
aminotransferase class-V family protein			Selenocysteine lyase		CDS	"Selenocysteine lyase, CsdB"			0	0	gs-sh	
conserved hypothetical protein			probable methyltransferase		CDS	ABC transporter ATP-binding protein			base_one HP	base_one HP	0	
glutamine amidotransferase domain protein			TIGR03442 family protein		CDS	Glutamine amidotransferases class-II			0	0	0	
aerobic sulfatase maturase family protein			TIGR03440 family protein		CDS	Serine/threonine kinase			0	0	0	
glutamate-cysteine ligase 2 family protein			glutamate--cysteine ligase family protein	6.3.2.2	CDS	"Similar to Glutamate--cysteine ligase, function unknown"	6.3.2.2		0	0	base_ec	
pknH-like extracellular domain protein			PknH-like extracellular domain.		CDS	FIG00820305: hypothetical protein			lit-s	0	0	
putative conserved proline rich protein						hypothetical protein			base_one miss	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	FIG00820599: hypothetical protein			base_lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Domain of unknown function (DUF4185).		CDS	FIG00821722: hypothetical protein			base_one HP	base_one HP	lit-s	
aspartate-semialdehyde dehydrogenase	1.2.1.11	asd	aspartate semialdehyde dehydrogenase (EC 1.2.1.11)	1.2.1.11	CDS	Aspartate-semialdehyde dehydrogenase	1.2.1.11		base_tigr	base_ec	base_ec	
aspartokinase	2.7.2.4	lysC	aspartate kinase (EC 2.7.2.4)	2.7.2.4	CDS	Aspartokinase	2.7.2.4		base_ec	base_ec	base_ec	
2-isopropylmalate synthase	2.3.3.13	leuA	2-isopropylmalate synthase, yeast type	2.3.3.13	CDS	2-isopropylmalate synthase	2.3.3.13		base_tigr	base_lit-s	base_ec	
exonuclease family protein			DNA polymerase III, epsilon subunit (EC 2.7.7.7)	2.7.7.7	CDS	DNA polymerase III subunit epsilon( EC:2.7.7.7 )			0	0	tf_idf	
mur ligase middle domain protein			UDP-N-acetylmuramyl tripeptide synthase		CDS	proposed amino acid ligase found clustered with an amidotransferase			0	0	0	
cobB/CobQ-like glutamine amidotransferase domain protein			Predicted glutamine amidotransferase		CDS	Putative amidotransferase similar to cobyric acid synthase			gs-sh	0	0	
conserved hypothetical protein			Domain of unknown function (DUF4095).		CDS	FIG00821247: hypothetical protein			base_one HP	base_one HP	lit-s	
recombination protein RecR		recR	DNA replication and repair protein RecR		CDS	Recombination protein RecR			base_tigr	lit-s	pfam-sh	
DNA-binding protein, YbaB/EbfC family			DNA-binding protein, YbaB/EbfC family		CDS	FIG000557: hypothetical protein co-occurring with RecR			base_lit-s	map	gs-sh	
N-acetylmuramoyl-L-alanine amidase family protein			N-acetylmuramoyl-L-alanine amidase	3.5.1.28	CDS	probable secreted protein			lit-s	0	0	
polyketide cyclase / dehydrase and lipid transport family protein			Polyketide cyclase / dehydrase and lipid transport.		CDS	FIG00994252: hypothetical protein			lit-s	0	0	
FAD binding domain protein			FAD/FMN-containing dehydrogenases		CDS	FAD/FMN-containing dehydrogenases			0	0	base_lit-s	
DNA polymerase III, subunit gamma and tau	2.7.7.7	dnaX	DNA polymerase III, subunit gamma and tau	2.7.7.7	CDS	DNA polymerase III subunits gamma and tau	2.7.7.7		base_lit-s	base_ec	base_ec	
mycolic acid cyclopropane synthetase family protein			Cyclopropane fatty acid synthase and related methyltransferases	2.1.1.79	CDS	Cyclopropane-fatty-acyl-phospholipid synthase	2.1.1.79		0	0	base_ec	
ASPARTATE AMINOTRANSFERASE	2.6.1.1	aspB	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs		CDS	Aspartate transaminase	2.6.1.1		gs-sh	base_ec	map	
conserved hypothetical protein			hypothetical protein		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			lit-s	base_one HP	base_one HP	
cutinase family protein						"serine esterase, cutinase family"			base_one miss	0	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
cutinase family protein			Cutinase.		CDS	"serine esterase, cutinase family"			lit-s	0	0	
polysaccharide biosynthesis family protein						Dihydroflavonol-4-reductase	1.1.1.219		base_one miss	0	base_one miss	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
zinc-binding dehydrogenase family protein			Threonine dehydrogenase and related Zn-dependent dehydrogenases		CDS	"2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific"	1.1.1.4		0	0	0	
FAD binding domain protein			Uncharacterized conserved protein		CDS	POSSIBLE OXIDOREDUCTASE			0	0	0	
H+ antiporter-2 family protein			drug resistance transporter, EmrB/QacA subfamily		CDS	Multidrug resistance protein B			base_tigr	0	0	
methyltransferase domain protein			Predicted Fe-S oxidoreductases		CDS	Possible Fe-S oxidoreductase			0	0	lit-s	
DNA polymerase LigD, polymerase domain		ligD	DNA polymerase LigD, polymerase domain	6.5.1.1	CDS	ATP-dependent DNA ligase	6.5.1.1		base_lit-s	gs-sh	base_ec	
ATP dependent DNA ligase domain protein			ATP-dependent DNA ligase	6.5.1.1	CDS	ATP-dependent DNA ligase LigC	6.5.1.1		tf_idf	map	base_ec	
hypothetical protein						FIG00821224: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	FIG00820818: hypothetical protein			base_one HP	base_one HP	lit-s	
NUDIX domain protein			Predicted NTP pyrophosphohydrolase		CDS	MutT-like protein			0	0	gs-sh	
putative diacyglycerol O-acyltransferase tgs2			Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			0	0	0	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	Probable transmembrane protein			base_one HP	base_one HP	0	
bacterial regulatory helix-turn-helix s, AraC family protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator, AraC family"			pfam-sh	pfam-sh	lit-s	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
conserved hypothetical protein			Uncharacterized conserved protein		CDS	"membrane protein, putative"			base_one HP	base_one HP	0	
PPE family protein			PPE family.		CDS	hypothetical protein			lit-s	base_one HP	base_one HP	
putative diacyglycerol O-acyltransferase tgs2			Diacylglycerol O-acyltransferase	2.3.1.20	CDS	Wax ester synthase/acyl-CoA:diacylglycerol acyltransferase			0	0	0	
FAD-containing monooxygenase EthA	1.14.13.-	ethA	hypothetical protein		CDS	"monooxygenase, flavin-binding family"			base_one HP	0	base_one HP	
pyridine nucleotide-disulfide oxidoreductase family protein			hypothetical protein		CDS	"monooxygenase, flavin-binding family"			base_one HP	0	base_one HP	
cadmium-translocating P-type ATPase	3.6.3.3	cadA	ATPase, P-type (transporting), HAD superfamily, subfamily IC/heavy metal translocating P-type ATPase		CDS	"Lead, cadmium, zinc and mercury transporting ATPase; Copper-translocating P-type ATPase"	3.6.3.3, 3.6.3.5, 3.6.3.4		gs-sh	base_ec-d	0	
HTH-type transcriptional repressor CzrA		czrA	transcriptional regulator, ArsR family		CDS	"Cobalt(II) binding transcription repressor, nmtR"			gs-sh	0	0	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria (DUF2237).		CDS	FIG00822941: hypothetical protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			PE family.		CDS	PE family protein			base_one HP	base_one HP	lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820925: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821869: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820497: hypothetical protein			lit-s	base_one HP	base_one HP	
			PIN domain.		CDS				base_one miss	base_both miss	base_one miss	
DNA binding , excisionase family domain protein			DNA binding domain, excisionase family		CDS	Excisionase			base_tigr	orth	orth	
phage integrase family protein			Site-specific recombinase XerD		CDS	Integrase			0	0	0	
cytidine and deoxycytidylate deaminase zinc-binding region family protein			tRNA-adenosine deaminase	3.5.4.-	CDS	tRNA-specific adenosine-34 deaminase	3.5.4.-		0	0	gs-sh	
putative conserved protein			putative tRNA adenosine deaminase-associated protein		CDS	FIG00994171: hypothetical protein			0	lit-s	0	
glycolipid-binding family protein			Uncharacterized protein conserved in bacteria		CDS	FIG00998044: hypothetical protein			0	0	lit-s	
prephenate dehydrogenase			prephenate dehydrogenase (EC 1.3.1.12)	1.3.1.12	CDS	Arogenate dehydrogenase	1.3.1.43		lit-s	0	base_ec-d	
binding--dependent transport system inner membrane component family protein			ABC-type proline/glycine betaine transport systems, permease component		CDS	Glycine betaine ABC transport system permease protein			0	0	0	
binding--dependent transport system inner membrane component family protein			ABC-type proline/glycine betaine transport systems, permease component		CDS	L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1)			0	0	0	
ABC transporter family protein			ABC-type proline/glycine betaine transport systems, ATPase components		CDS	L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1)			0	0	0	
substrate binding domain of ABC-type glycine betaine transport system family protein			Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)		CDS	L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1)			0	0	0	
conserved hypothetical protein			Uncharacterized integral membrane protein		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_one HP	base_one HP	gs-sh	
phosphotransferase enzyme family protein			Predicted aminoglycoside phosphotransferase		CDS	Acyl-CoA dehydrogenase FadE36	1.3.99.-		tf_idf	orth	map	
metallo-beta-lactamase superfamily protein			Alkyl sulfatase and related hydrolases		CDS	alkyl sulfatase	3.1.6.-		0	0	0	
mycobacterium 19 kDa lipoantigen family protein			Mycobacterium 19 kDa lipoprotein antigen.		CDS	19 kDa lipoprotein antigen precursor LpqH			0	0	tf_idf	
putative sensor histidine kinase TcrY			Signal transduction histidine kinase	2.7.13.3	CDS	sensor histidine kinase			0	tf_idf	0	
putative transcriptional regulatory protein TcrX			Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain		CDS	putative two-component system response regulator			0	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821932: hypothetical protein			lit-s	base_one HP	base_one HP	
putative S-adenosyl-L-methionine-dependent methyltransferase ML2640			methyltransferase, putative, TIGR00027 family		CDS	O-Methyltransferase involved in polyketide biosynthesis			0	0	0	
snoaL-like domain protein			SnoaL-like domain.		CDS	FIG00824660: hypothetical protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00821447: hypothetical protein			lit-s	base_one HP	base_one HP	
putative membrane protein			hypothetical protein		CDS	FIG00820132: hypothetical protein			base_one HP	0	base_one HP	
hypothetical protein			hypothetical protein		CDS	PROBABLE REMNANT OF A TRANSPOSASE			base_lit-s	base_one HP	base_one HP	
transposase domain protein			hypothetical protein		CDS	Mobile element protein			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00824690: hypothetical protein			lit-s	base_one HP	base_one HP	
putative phenylalanine aminotransferase			Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase	2.6.1.9	CDS	Biosynthetic Aromatic amino acid aminotransferase beta	2.6.1.57		0	0	base_ec-d	
conserved hypothetical protein			TIGR03086 family protein		CDS	"Transcriptional regulator, ArsR family"			base_one HP	base_one HP	gs-sh	
enoyl-CoA hydratase/isomerase family protein			Enoyl-CoA hydratase/carnithine racemase	4.2.1.17	CDS	Enoyl-CoA hydratase			0	0	0	
beta-lactamase family protein			Beta-lactamase class C and other penicillin binding proteins		CDS	Beta-lactamase			0	lit-s	0	
conserved hypothetical protein									base_one HP	base_one HP	base_both miss	
NAD(P)H quinone oxidoreductase, PIG3 family protein			putative NAD(P)H quinone oxidoreductase, PIG3 family		CDS	Quinone oxidoreductase	1.6.5.5		base_tigr	0	0	
aminotransferase class-V family protein			Selenocysteine lyase		CDS	Cysteine desulfurase	2.8.1.7		0	0	0	
putative membrane protein			hypothetical protein		CDS	FIG00820726: hypothetical protein			base_one HP	0	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF2587).		CDS	FIG00822472: hypothetical protein			base_one HP	base_one HP	lit-s	
ABC transporter family protein			ABC-type polysaccharide/polyol phosphate transport system, ATPase component		CDS	"O-antigen export system, ATP-binding protein"			0	0	0	
UDP-galactofuranosyl transferase GlfT1	2.4.1.-	glfT1	Predicted glycosyltransferases		CDS	Putative glycosyl transferase			gs-sh	0	0	
ABC-2 type transporter family protein			ABC-type polysaccharide/polyol phosphate export systems, permease component		CDS	O-antigen export system permease protein RfbD			0	0	gs-sh	
polysaccharide biosynthesis family protein			dTDP-D-glucose 4,6-dehydratase	4.2.1.46	CDS	"dTDP-glucose 4,6-dehydratase"	4.2.1.46		0	0	base_ec	
glycosyl transferase 2 family protein			Membrane proteins related to metalloendopeptidases		CDS	Membrane proteins related to metalloendopeptidases			0	0	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	"dTDP-glucose 4,6-dehydratase"	4.2.1.46		lit-s	base_one HP	base_one HP	
methyltransferase, TIGR00027 family protein	2.1.1.-		methyltransferase, putative, TIGR00027 family		CDS	FIG00819993: hypothetical protein			base_tigr	0	0	
transcription elongation factor, GreA/GreB, C-term family protein			Transcription elongation factor		CDS	Nucleoside diphosphate kinase regulator			gs-sh	map	orth	
gtrA-like family protein			Predicted membrane protein		CDS	Possible membrane protein			gs-sh	map	lit-s	
putative decaprenylphosphoryl-beta-D-ribose oxidase			FAD/FMN-containing dehydrogenases		CDS	"Oxidoreductase, FAD-binding protein"			0	0	0	
putative decaprenylphosphoryl-D-2-keto erythropentose reductase			Short-chain dehydrogenases of various substrate specificities		CDS	3-oxoacyl-[acyl-carrier protein] reductase paralog	1.1.1.100		0	0	0	
arabinofuranosyltransferase AftA	2.4.2.-	aftA	Arabinofuranosyltransferase N terminal./Arabinofuranosyltransferase A C terminal.	2.4.2.-	CDS	putative membrane protein			gs-sh	orth	map	
putative arabinosyltransferase C			Mycobacterial cell wall arabinan synthesis protein.	2.4.2.-	CDS	INTEGRAL MEMBRANE INDOLYLACETYLINOSITOL ARABINOSYLTRANSFERASE EMBC (ARABINOSYLINDOLYLACETYLINOSITOL SYNTHASE)			0	0	0	
mycobacterial cell wall arabinan synthesis family protein			4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family	2.4.2.-	CDS	Probable arabinosyltransferase A	2.4.2.-		0	0	0	
putative arabinosyltransferase C			Mycobacterial cell wall arabinan synthesis protein.	2.4.2.-	CDS	Integral membrane indolylacetylinositol arabinosyltransferase embB( EC:2.4.2.34 )			0	0	gs-sh	
metallo-beta-lactamase superfamily protein			RNAse Z	3.1.26.11	CDS	Putative uncharacterized protein BCG_3858			0	0	0	
acyl-CoA dehydrogenase, C-terminal domain protein			Acyl-CoA dehydrogenases		CDS	Probable acyl-CoA dehydrogenase fadE35	1.3.99.-		0	tf_idf	0	
transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
propionyl-CoA carboxylase complex B subunit		pccB	Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)		CDS	Propionyl-CoA carboxylase beta chain	6.4.1.3		gs-sh	gs-sh	map	
thioesterase domain protein			mycolic acid condensase	2.3.1.-	CDS	"Probable polyketide synthase, similar to many. e.g. gp|M63676|SERERYAA_1 S.erythraea first ORF of eryA gene, involved in complex polyketide formation in erythromycin biosynthesis."			0	0	gs-sh	
long-chain-fatty-acid--AMP ligase FadD32	6.2.1.-	fadD32	Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	fatty-acid-CoA ligase FadD32			pfam-sh	0	0	
conserved hypothetical protein			Cutinase.		CDS	hypothetical protein Rv3802c			base_one HP	base_one HP	0	
antigen 85-C	2.3.1.-	fbpC	Predicted esterase		CDS	Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C)	2.3.1.-		gs-sh	0	0	
antigen 85-B	2.3.1.-	fbpB	Predicted esterase		CDS	Antigen 85-C precursor (85C) (Antigen 85 complex C) (Ag85C) (Mycolyl transferase 85C)	2.3.1.-		gs-sh	0	0	
putative membrane protein			hypothetical protein	2.4.2.-	CDS	hypothetical protein Rv3805c			base_one HP	0	base_one HP	
ubiA prenyltransferase family protein			4-hydroxybenzoate polyprenyltransferase and related prenyltransferases		CDS	POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN			gs-sh	orth	map	
PAP2 superfamily protein			Membrane-associated phospholipid phosphatase		CDS	FIG008913: Membrane-associated phospholipid phosphatase			orth	map	lit-s	
UDP-galactofuranosyl transferase GlfT2	2.4.1.-	glfT2	Predicted glycosyltransferases		CDS	Galactofuranosyl transferase	2.-.-.-		0	0	0	
UDP-galactopyranose mutase	5.4.99.9	glf	UDP-galactopyranose mutase	5.4.99.9	CDS	UDP-galactopyranose mutase	5.4.99.9		base_lit-s	base_lit-s	base_lit-s	
exported repetitive protein		erp	GLTT repeat (6 copies).		CDS	Exported repetitive protein precursor (Cell surface protein pirG) (EXP53)			gs-sh	gs-sh	gs-sh	
N-acetylmuramoyl-L-alanine amidase family protein			Uncharacterized protein potentially involved in peptidoglycan biosynthesis		CDS	Putative uncharacterized protein BCG_3873			0	0	0	
putative pilT domain protein			hypothetical protein		CDS	FIG00823856: hypothetical protein			base_one HP	0	base_one HP	
PE family protein			PE family.		CDS	PE-PGRS FAMILY PROTEIN			lit-s	0	0	
HAD hydrolase, IIB family protein			HAD-superfamily hydrolase, subfamily IIB		CDS	Cof family hydrolase			pfam-sh	0	0	
acyltransferase family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51		orth	orth	base_lit-s	
acyltransferase family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51		orth	orth	base_lit-s	
bacterial lipid A biosynthesis acyltransferase family protein			1-acyl-sn-glycerol-3-phosphate acyltransferase		CDS	1-acyl-sn-glycerol-3-phosphate acyltransferase	2.3.1.51		0	0	base_lit-s	
phosphotransferase enzyme family protein			Aminoglycoside phosphotransferase	2.7.1.95	CDS	aminoglycoside 3'-phosphotransferase			0	0	orth	
putative Rieske 2Fe-2S iron-sulfur protein MSMEG_6410			Predicted Zn-dependent hydrolases of the beta-lactamase fold		CDS	Rieske (2Fe-2S) domain protein			0	tf_idf	0	
conserved hypothetical protein			hypothetical protein		CDS	Putative uncharacterized protein BCG_3881			lit-s	base_one HP	base_one HP	
trehalose-2-sulfate acyltransferase papA2	2.3.1.-	papA2	Condensation domain.		CDS	Polyketide synthase associated protein papA2			gs-sh	gs-sh	gs-sh	
conserved hypothetical protein			Protein of unknown function (DUF2910).		CDS	hypothetical protein Rv3821			base_one HP	base_one HP	0	
PE-PPE domain protein			PE-PPE domain.		CDS	PE family protein			lit-s	0	0	
membrane transport protein mmpL8		mmpL8	Predicted drug exporters of the RND superfamily		CDS	"membrane protein, MmpL family, putative"			gs-sh	orth	map	
trehalose-2-sulfate acyltransferase papA2	2.3.1.-	papA2	Non-ribosomal peptide synthetase modules and related proteins		CDS	Polyketide synthase associated protein PapA1			gs-sh	0	0	
mycocerosic acid synthase	2.3.1.111	mas	Polyketide synthase modules and related proteins		CDS	Polyketide synthase			gs-sh	0	0	
putative transposase family protein			Transposase and inactivated derivatives		CDS	Mobile element protein			0	0	0	
putative long-chain-fatty-acid--CoA ligase FadD23			Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II		CDS	Long-chain-fatty-acid--CoA ligase	6.2.1.3		0	0	0	
resolvase, N terminal domain protein			Predicted site-specific integrase-resolvase		CDS	POSSIBLE RESOLVASE			0	0	0	
FAD binding domain protein			Phytoene dehydrogenase and related proteins		CDS	Beta-carotene ketolase	1.14.-.-		0	0	0	
bacterial regulatory s, tetR family protein			transcriptional regulator, TetR family		CDS	Beta-carotene ketolase	1.14.-.-		gs-sh	0	0	
methyltransferase domain protein			Methylase involved in ubiquinone/menaquinone biosynthesis		CDS	FIG00820669: hypothetical protein			0	0	0	
conserved hypothetical protein			Protein of unknown function (DUF2834).		CDS	FIG00821485: hypothetical protein			base_one HP	base_one HP	lit-s	
serine--tRNA ligase	6.1.1.11	serS	seryl-tRNA synthetase (EC 6.1.1.11)	6.1.1.11	CDS	Seryl-tRNA synthetase	6.1.1.11		base_tigr	base_ec	base_ec	
cupin domain protein			transcriptional regulator, AraC family		CDS	"Transcriptional regulator, AraC family"			0	0	lit-s	
conserved hypothetical protein			Septum formation.		CDS	PROBABLE CONSERVED MEMBRANE PROTEIN			base_one HP	base_one HP	0	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
conserved hypothetical protein			Uncharacterized protein conserved in bacteria		CDS	hypothetical protein			base_one HP	lit-s	base_one HP	
histidine phosphatase super family protein			Fructose-2,6-bisphosphatase	5.4.2.1	CDS	putative phosphoglycerate mutase			0	0	0	
prephenate dehydratase family protein			prephenate dehydratase (EC 4.2.1.51)	4.2.1.51	CDS	Prephenate dehydratase	4.2.1.51		lit-s	lit-s	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG00998479: hypothetical protein			lit-s	base_one HP	base_one HP	
cell envelope-related function transcriptional attenuator common domain protein			transcriptional attenuator, LytR family		CDS	"Cell envelope-associated transcriptional attenuator LytR-CpsA-Psr, subfamily A1 (as in PMID19099556)"			base_tigr	map	pfam-sh	
putative bacterioferritin BfrB			Ferritin-like protein		CDS	Ferritin			0	0	0	
glycerophosphoryl diester phosphodiesterase family protein			Glycerophosphoryl diester phosphodiesterase	3.1.4.46	CDS	Glycerophosphoryl diester phosphodiesterase	3.1.4.46		lit-s	lit-s	base_lit-s	
conserved hypothetical protein			Domain of unknown function (DUF4328).		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_one HP	base_one HP	0	
						hypothetical protein			base_both miss	base_one HP	base_one HP	
hypothetical protein									base_one HP	base_one HP	base_both miss	
conserved hypothetical protein						FIG00822175: hypothetical protein			base_one HP	base_one HP	base_one miss	
transposase family protein			Transposase.		CDS	Mobile element protein			lit-s	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG091491: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein						FIG00821489: hypothetical protein			base_one HP	base_one HP	base_one miss	
hypothetical protein			hypothetical protein		CDS	FIG00821329: hypothetical protein			base_lit-s	base_one HP	base_one HP	
superoxide dismutase [Fe]	1.15.1.1	sodB	Superoxide dismutase	1.15.1.1	CDS	Superoxide dismutase [Mn/Fe]	1.15.1.1		base_ec	base_ec	base_ec	
conserved hypothetical protein			hypothetical protein		CDS	FIG017534: hypothetical protein			lit-s	base_one HP	base_one HP	
hypothetical protein						FIG00820641: hypothetical protein			base_one HP	base_one HP	base_one miss	
conserved hypothetical protein			Predicted membrane protein		CDS	FIG037441: Conserved transmembrane protein			base_one HP	base_one HP	0	
ESX-1 secretion-associated regulator EspR		espR	hypothetical protein		CDS	ESX-1 secreted protein regulator EspR			base_one HP	0	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG022958: hypothetical protein			lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	POSSIBLE MEMBRANE PROTEIN			base_lit-s	base_one HP	base_one HP	
hypothetical protein			hypothetical protein		CDS	POSSIBLE HISTONE-LIKE PROTEIN HNS			base_lit-s	base_one HP	base_one HP	
putative regulator of ribonuclease activity			RraA famliy		CDS	Ribonuclease E inhibitor RraA			0	0	0	
FAD-containing monooxygenase EthA	1.14.13.-	ethA	Predicted flavoprotein involved in K+ transport	1.14.13.-	CDS	"monooxygenase, flavin-binding family"			gs-sh	0	0	
HTH-type transcriptional regulator EthR		ethR	transcriptional regulator, TetR family		CDS	"Transcriptional repressor EthR, TetR family"			gs-sh	gs-sh	pfam-sh	
PHP domain protein			Histidinol phosphatase and related hydrolases of the PHP family		CDS	DNA-dependent DNA polymerase beta chain			pfam-sh	0	0	
membrane domain protein			hypothetical protein		CDS	hypothetical protein			base_one HP	base_one HP	base_lit-s	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820244: hypothetical protein			lit-s	base_one HP	base_one HP	
glutamate synthase, NADH/NADPH, small subunit domain protein	1.4.1.-	gltD	glutamate synthase (NADH) small subunit	1.4.1.13, 1.4.1.14,1.4.1.14	CDS	Glutamate synthase [NADPH] small chain	1.4.1.13		base_tigr	gs-sh	base_ec-d	
GXGXG motif family protein			Glutamate synthase domain 2	1.4.1.13, 1.4.1.14	CDS	Glutamate synthase [NADPH] large chain	1.4.1.13		0	0	base_ec-d	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	"Antiactivator of flagellar biosynthesis FleN, an ATPase"			gs-sh	0	0	
			Transcription factor WhiB.		CDS				base_one miss	base_both miss	base_one miss	
transcription factor WhiB domain protein						FIG00820791: hypothetical protein			base_one miss	0	base_one miss	
conserved hypothetical protein			hypothetical protein		CDS	Probable forkhead-associated protein			lit-s	base_one HP	base_one HP	
putative eSX-1 secretion-associated protein EspE			hypothetical protein		CDS	FIG034615: hypothetical protein			base_one HP	0	base_one HP	
ESX-1 secretion-associated protein EspF		espF	Protein of unknown function (DUF2580).		CDS	conserved hypothetical protein			gs-sh	base_one HP	base_one HP	
ESX-1 secretion-associated protein EspG1		espG1	EspG family.		CDS	RD1 region associated protein Rv3866			gs-sh	0	0	
ESX-1 secretion-associated protein EspD		espD	hypothetical protein		CDS	RD1 region associated protein Rv3867			base_one HP	0	base_one HP	
type VII secretion AAA-ATPase EccA		eccA	type VII secretion AAA-ATPase EccA		CDS	"AAA family ATPase, ESX-1 secretion system component Rv3868"			base_lit-s	pfam-sh	pfam-sh	
type VII secretion protein EccB		eccB	type VII secretion protein EccB, Actinobacterial		CDS	Putative ESX-1 secretion system component Rv3869			base_tigr	0	0	
ESX-1 secretion system protein eccCa1		eccCa1	type VII secretion protein EccCa		CDS	"FtsK/SpoIIIE family protein Rv3870, component of ESX-1 secretion system"			gs-sh	gs-sh	gs-sh	
ESX-1 secretion system protein EccCb1		eccCb1	type VII secretion protein EccCb		CDS	"FtsK/SpoIIIE family protein Rv3871, component of ESX-1 secretion system"			0	0	gs-sh	
conserved hypothetical protein			PE family.		CDS	PE family protein			base_one HP	base_one HP	lit-s	
PPE family protein			PPE-repeat proteins		CDS	Putative ESX-1 secretion system gating protein PPE68			pfam-sh	0	0	
ESAT-6-like protein esxB		esxB	WXG100 family type VII secretion target		CDS	10 kDa culture filtrate antigen CFP-10 (EsxB)			gs-sh	0	0	
6 kDa early secretory antigenic target		esxA	WXG100 family type VII secretion target		CDS	6 kDa early secretory antigenic target ESAT-6 (EsxA)			gs-sh	tf_idf	map	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	RD1 region associated protein Rv3876			gs-sh	0	0	
type VII secretion integral membrane protein EccD		eccD	type VII secretion integral membrane protein EccD		CDS	Putative ESX-1 secretion system component Rv3877			base_lit-s	0	0	
putative eSX-1 secretion-associated protein EspJ			hypothetical protein		CDS	RD1 region associated protein Rv3878			base_one HP	0	base_one HP	
ESX-1 secretion-associated EspK domain protein		espK	hypothetical protein		CDS	RD1 region associated protein Rv3879c			base_one HP	0	base_one HP	
conserved hypothetical protein						LigA			base_one HP	base_one HP	base_one miss	
putative predicted protein						hypothetical protein			base_one miss	base_one HP	base_one HP	
ybaB/EbfC DNA-binding family protein			YbaB/EbfC DNA-binding family.		CDS	FIG00821130: hypothetical protein			lit-s	0	0	
ESX-1 secretion-associated protein EspB		espB	hypothetical protein		CDS	FIG028708: hypothetical protein			base_one HP	0	base_one HP	
ESX-1 secretion system protein EccE1		eccE1	type VII secretion protein EccE		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			gs-sh	gs-sh	gs-sh	
type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	serine protease			base_lit-s	0	0	
type VII secretion AAA-ATPase EccA		eccA	type VII secretion AAA-ATPase EccA		CDS	Type VII secretion system protein EccA2			base_lit-s	0	0	
type VII secretion protein EccE		eccE	type VII secretion protein EccE		CDS	"Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage"			base_lit-s	map	gs-sh	
type VII secretion-associated serine protease mycosin	3.4.21.-	mycP	type VII secretion-associated serine protease mycosin	3.4.21.-	CDS	Type VII secretion-associated serine protease mycosin			base_lit-s	lit-s	lit-s	
type VII secretion integral membrane protein EccD		eccD	type VII secretion integral membrane protein EccD		CDS	PROBABLE CONSERVED TRANSMEMBRANE PROTEIN			base_lit-s	0	0	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	ATP/GTP binding protein			gs-sh	0	0	
espG family protein			EspG family.		CDS	FIG00820325: hypothetical protein			lit-s	0	0	
s of 100 residues with WXG family protein			Uncharacterized protein conserved in bacteria		CDS	Esat-6 like protein EsxC			0	0	0	
s of 100 residues with WXG family protein			Proteins of 100 residues with WXG.		CDS	Esat-6 like protein EsxD			0	0	0	
PPE family protein			PPE family.		CDS	PPE family protein			lit-s	base_lit-s	lit-s	
PE family protein			PE family.		CDS	PE family protein			lit-s	base_lit-s	lit-s	
hypothetical protein						FIG00824716: hypothetical protein			base_one HP	base_one HP	base_one miss	
type VII secretion protein EccCb		eccCb	DNA segregation ATPase FtsK/SpoIIIE and related proteins		CDS	FtsK/SpoIIIE family protein			0	0	gs-sh	
type VII secretion protein EccB		eccB	type VII secretion protein EccB, Actinobacterial		CDS	PROBABLE CONSERVED MEMBRANE PROTEIN			base_tigr	0	0	
transglycosylase SLT domain protein			SLT domain proteins		CDS	Putative secreted protein			pfam-sh	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820584: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820584: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	Vegetative cell wall protein gp1 precursor			lit-s	base_one HP	base_one HP	
putative conserved alanine rich protein			hypothetical protein		CDS	Vegetative cell wall protein gp1 precursor			base_one HP	0	base_one HP	
			hypothetical protein		CDS				base_one HP	base_both miss	base_one HP	
putative membrane protein			hypothetical protein		CDS	POSSIBLE MEMBRANE PROTEIN			base_one HP	lit-s	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00822578: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820525: hypothetical protein			lit-s	base_one HP	base_one HP	
conserved hypothetical protein			Protein of unknown function (DUF4237).		CDS	FIG00832379: hypothetical protein			base_one HP	base_one HP	lit-s	
s of 100 residues with WXG family protein			Uncharacterized protein conserved in bacteria		CDS	Esat-6 like protein EsxE			0	0	0	
WXG100 type VII secretion target family protein			Uncharacterized protein conserved in bacteria		CDS	Esat-6 like protein EsxF			base_tigr	0	0	
conserved hypothetical protein			hypothetical protein		CDS	FIG00820046: hypothetical protein			lit-s	base_one HP	base_one HP	
CCA tRNA nucleotidyltransferase	2.7.7.72		tRNA adenylyltransferase	2.7.7.19	CDS	tRNA nucleotidyltransferase	2.7.7.21, 2.7.7.25		base_ec-d	base_ec-d	base_ec-d	
NUDIX domain protein			ADP-ribose pyrophosphatase		CDS	MutT/nudix family protein			0	0	gs-sh	
conserved hypothetical protein			hypothetical protein		CDS	hypothetical protein			lit-s	lit-s	base_lit-s	
integral membrane protein MviN		mviN	integral membrane protein MviN		CDS	Proposed peptidoglycan lipid II flippase MurJ			base_lit-s	0	0	
RNA polymerase sigma factor, sigma-70 family protein			DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog		CDS	"RNA polymerase sigma-70 factor, ECF subfamily"			base_tigr	tf_idf	map	
conserved hypothetical protein			hypothetical protein		CDS	FIG00999975: hypothetical protein			lit-s	base_one HP	base_one HP	
thioredoxin-disulfide reductase	1.8.1.9	trxB	thioredoxin-disulfide reductase	1.8.1.9	CDS	Thioredoxin reductase	1.8.1.9		base_lit-s	base_ec	base_ec	
thioredoxin		trxA	thioredoxin		CDS	Thioredoxin reductase	1.8.1.9		base_lit-s	gs-sh	map	
putative peptidoglycan binding domain protein			N-acetylmuramoyl-L-alanine amidase		CDS	N-acetylmuramoyl-L-alanine amidase	3.5.1.28		0	0	base_lit-s	
putative acetyltransferase			hypothetical protein		CDS	FIG007808: hypothetical protein			base_one HP	0	base_one HP	
parB/RepB/Spo0J family partition domain protein			chromosome segregation DNA-binding protein		CDS	Chromosome (plasmid) partitioning protein ParB / Stage 0 sporulation protein J			base_tigr	gs-sh	gs-sh	
cobQ/CobB/MinD/ParA nucleotide binding domain protein			ATPases involved in chromosome partitioning		CDS	Chromosome (plasmid) partitioning protein ParA / Sporulation initiation inhibitor protein Soj			gs-sh	pfam-sh	gs-sh	
16S rRNA (guanine(527)-N(7))-methyltransferase GidB	2.1.1.170	gidB	16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170)	2.1.1.170	CDS	Ribosomal RNA small subunit methyltransferase G			base_tigr	gs-sh	map	
KH domain protein			Predicted RNA-binding protein		CDS	RNA-binding protein Jag			0	0	0	
membrane insertase, YidC/Oxa1 family domain protein		yidC	Preprotein translocase subunit YidC		CDS	"Inner membrane protein translocase component YidC, long form"			base_tigr	gs-sh	gs-sh	
ribonuclease P family protein						Ribonuclease P protein component	3.1.26.5		base_one miss	lit-s	base_one miss	
